Receptor
PDB id Resolution Class Description Source Keywords
5HDA 2.39 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF THE BS69 COILED COIL-MYND DOMAINS BOUND EBNA2 PXLXP MOTIF HOMO SAPIENS BS69 EBNA2 MYND ZMYND11 COILED-COIL IMMUNE SYSTEM
Ref.: BS69/ZMYND11 C-TERMINAL DOMAINS BIND AND INHIBIT EB PLOS PATHOG. V. 12 05414 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ZN A:601;
C:602;
A:602;
C:601;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
65.409 Zn [Zn+2...
SER MET PRO GLU LEU SER PRO VAL LEU B:381;
D:381;
 Valid;
Valid;
 Atoms found LESS than expected: % Diff = 0.134;
Atoms found LESS than expected: % Diff = 0.015;
 Kd = 7.4 uM
843.013 n/a S(CCC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5HDA 2.39 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF THE BS69 COILED COIL-MYND DOMAINS BOUND EBNA2 PXLXP MOTIF HOMO SAPIENS BS69 EBNA2 MYND ZMYND11 COILED-COIL IMMUNE SYSTEM
Ref.: BS69/ZMYND11 C-TERMINAL DOMAINS BIND AND INHIBIT EB PLOS PATHOG. V. 12 05414 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 5HDA Kd = 7.4 uM SER MET PRO GLU LEU SER PRO VAL LEU n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 5HDA Kd = 7.4 uM SER MET PRO GLU LEU SER PRO VAL LEU n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 5HDA Kd = 7.4 uM SER MET PRO GLU LEU SER PRO VAL LEU n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: SER MET PRO GLU LEU SER PRO VAL LEU; Similar ligands found: 50
No: Ligand ECFP6 Tc MDL keys Tc
1 SER MET PRO GLU LEU SER PRO VAL LEU 1 1
2 SER ALA GLU PRO VAL PRO LEU GLN LEU 0.515385 0.9375
3 MET LEU LEU SER VAL PRO LEU LEU LEU GLY 0.484127 0.9375
4 THR PRO GLN ASP LEU ASN THR MET LEU 0.474453 0.924242
5 SER GLU CYS THR THR PRO CYS 0.472 0.876923
6 SER SER CYS PRO LEU SER LYS 0.468254 0.90625
7 ASN LEU VAL PRO MET VAL ALA VAL VAL 0.466165 0.876923
8 ASN LEU VAL PRO MET VAL ALA THR VAL 0.456522 0.909091
9 ASN LEU VAL PRO MET VAL ALA ALA VAL 0.455224 0.876923
10 ARG PRO GLN VAL PRO LEU ARG PRO MET 0.451389 0.842857
11 LEU TYR ALA SER PRO GLN LEU GLU GLY PHE 0.448718 0.802817
12 MET GLN SER TPO PRO LEU 0.446043 0.847222
13 ALA PRO THR MET PRO PRO PRO LEU PRO PRO 0.44186 0.924242
14 ACE MET GLN SER SEP PRO LEU NH2 0.441176 0.847222
15 SER ILE TYR PHE TPO PRO GLU LEU TYR ASP 0.438272 0.746835
16 LEU PRO PHE GLU LYS SER THR VAL MET 0.435065 0.940298
17 GLN LEU SER PRO PHE PRO PHE ASP LEU 0.434483 0.867647
18 GLU LYS PRO SER SER SER 0.434426 0.859375
19 PTR VAL PRO MET LEU 0.433824 0.736842
20 TYR LEU GLU PRO ALA PRO VAL THR ALA 0.433566 0.828571
21 ILE PRO LEU THR GLU GLU ALA GLU LEU 0.432836 0.848485
22 GLN MET PRO THR GLU ASP GLU TYR 0.432432 0.884058
23 SER HIS SEP SER PRO ALA SER LEU GLN 0.429487 0.786667
24 ALA LEU MET PRO GLY GLN PHE PHE VAL 0.425676 0.823529
25 ACE GLU LEU LEU MET VAL PRO ASP MET TYR 0.424658 0.84058
26 ARG PRO ARG PRO ASP ASP LEU GLU ILE 0.423611 0.788732
27 ASN PRO ARG ALA MET GLN ALA LEU LEU 0.423611 0.830986
28 VAL PRO LEU THR GLU ASP ALA GLU LEU 0.423358 0.861538
29 ASN LEU VAL PRO GLN VAL ALA THR VAL 0.421429 0.848485
30 VAL MET ALA PRO ARG ALA LEU LEU LEU 0.421429 0.788732
31 ARG SER ALA SEP GLU PRO SER LEU 0.42 0.776316
32 ASN ARG PRO ILE LEU SER LEU 0.417266 0.805556
33 PRO GLU PRO THR ALA PRO PRO GLU GLU 0.417266 0.863636
34 ARG PRO LYS PRO LEU VAL ASP PRO 0.416667 0.742857
35 ARG GLN ALA SEP ILE GLU LEU PRO SER MET 0.416667 0.818182
36 SER HIS SEP SER PRO ALA SER LEU 0.416107 0.773333
37 VAL PRO LEU ARG PRO MET THR TYR 0.415584 0.826667
38 LEU PRO GLU THR GLY 0.414634 0.861538
39 ALA MET ALA PRO ARG THR LEU LEU LEU 0.412587 0.833333
40 LEU SER SER PRO VAL THR LYS SER PHE 0.412162 0.850746
41 ACE ASP PTR ALA GLU PRO MET ASP ALA NH2 0.411765 0.74026
42 LYS PRO SEP GLN GLU LEU 0.410853 0.763889
43 GLY TYR GLN ASP TYR GLU PRO GLU ALA 0.410448 0.73913
44 ASP ARG VAL GLU LEU ASN ALA PRO ARG GLN 0.409722 0.763889
45 GLN PRO PRO VAL PRO PRO GLN ARG PRO MET 0.405405 0.842857
46 TYR LEU GLU PRO GLY PRO VAL THR ALA 0.403974 0.855072
47 TYR LEU GLU PRO GLY PRO VAL THR VAL 0.403974 0.855072
48 GLU LEU PRO LEU VAL LYS ILE 0.402878 0.815385
49 ILE LEU LYS GLU PRO VAL HIS GLY VAL 0.401274 0.782609
50 MET THR SER ALA ILE GLY ILE LEU PRO VAL 0.4 0.939394
Similar Ligands (3D)
Ligand no: 1; Ligand: SER MET PRO GLU LEU SER PRO VAL LEU; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5HDA; Ligand: SER MET PRO GLU LEU SER PRO VAL LEU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5hda.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback