-->
Receptor
PDB id Resolution Class Description Source Keywords
5H4S 1.8 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF A RHAMNOSE-BINDING LECTIN SUL-I FROM TH TOXOPNEUSTID SEA URCHIN TOXOPNEUSTES PILEOLUS TOXOPNEUSTES PILEOLUS RHAMNOSE-BINDING LECTIN SUL-I SEA URCHIN TOXOPNEUSTES PILLECTIN SUGAR BINDING PROTEIN
Ref.: CARBOHYDRATE RECOGNITION BY THE RHAMNOSE-BINDING LE SUL-I WITH A NOVEL THREE-DOMAIN STRUCTURE ISOLATED VENOM OF GLOBIFEROUS PEDICELLARIAE OF THE FLOWER SE TOXOPNEUSTES PILEOLUS PROTEIN SCI. V. 26 1574 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
RAM A:302;
A:301;
A:303;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
164.156 C6 H12 O5 C[C@H...
PO4 A:304;
Invalid;
none;
submit data
94.971 O4 P [O-]P...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5H4S 1.8 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF A RHAMNOSE-BINDING LECTIN SUL-I FROM TH TOXOPNEUSTID SEA URCHIN TOXOPNEUSTES PILEOLUS TOXOPNEUSTES PILEOLUS RHAMNOSE-BINDING LECTIN SUL-I SEA URCHIN TOXOPNEUSTES PILLECTIN SUGAR BINDING PROTEIN
Ref.: CARBOHYDRATE RECOGNITION BY THE RHAMNOSE-BINDING LE SUL-I WITH A NOVEL THREE-DOMAIN STRUCTURE ISOLATED VENOM OF GLOBIFEROUS PEDICELLARIAE OF THE FLOWER SE TOXOPNEUSTES PILEOLUS PROTEIN SCI. V. 26 1574 2017
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 5H4S - RAM C6 H12 O5 C[C@H]1[C@....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 5H4S - RAM C6 H12 O5 C[C@H]1[C@....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 5H4S - RAM C6 H12 O5 C[C@H]1[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RAM; Similar ligands found: 9
No: Ligand ECFP6 Tc MDL keys Tc
1 FCB 1 1
2 FUC 1 1
3 FCA 1 1
4 XXR 1 1
5 G6D 1 1
6 RAM 1 1
7 RM4 1 1
8 FUL 1 1
9 FUF 0.424242 0.846154
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: 516
This union binding pocket(no: 1) in the query (biounit: 5h4s.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 3PD2 A3S None
2 5D9G GLU ASN LEU TYR PHE GLN None
3 4V0K GDP None
4 4BQS ADP None
5 4BQS K2Q None
6 4LPS GDP None
7 5LLB 6YZ None
8 2D7C GTP None
9 4J5R A1R None
10 1F8Y 5MD None
11 1SJN DUP None
12 5XG5 A2G None
13 1OIX GDP None
14 1JJV ATP None
15 4OM8 NAD None
16 5MLJ 9ST None
17 1RC0 KT5 None
18 5ZB0 ADP 1.0101
19 5ZB0 TYD 1.0101
20 3P3G 3P3 1.05634
21 3P3G UKW 1.05634
22 4KQI NIO 1.05634
23 4KQI RBZ 1.05634
24 2BME GNP 1.07527
25 5CB3 APR 1.0929
26 3CNL GNP 1.14504
27 4YDS ATP 1.31579
28 1NN5 2DT 1.39535
29 1NN5 ANP 1.39535
30 1IXE COA 1.40845
31 1GQG DCD 1.40845
32 1EHI ADP 1.40845
33 4AU8 Z3R 1.40845
34 3E70 GDP 1.40845
35 3WDM ADN 1.53257
36 3R96 ACO 1.59574
37 3R96 AMP 1.59574
38 1FZQ GDP 1.65746
39 1XFF GLU 1.66667
40 1YZG GDP 1.67598
41 3ND6 ATP 1.75439
42 1AJ8 COA 1.76056
43 1XKV ATP 1.76056
44 1Q9I TEO 1.76056
45 1Q9I FAD 1.76056
46 1RRC ADP 1.76056
47 1SVM ATP 1.76056
48 2XAU ADP 1.76056
49 5TSH ANP 1.76056
50 5GQX GLC GLC GLC GLC GLC GLC GLC 1.76056
51 5LTJ ADP 1.76056
52 4OOE NDP 1.76056
53 5TSH ADP 1.76056
54 5XNC MTA 1.76056
55 4D42 NAP 1.77305
56 4D42 W0I 1.77305
57 1AKY AP5 1.81818
58 4NBI D3Y 1.82927
59 5BW4 SAM 1.87266
60 5LUB 3Y7 1.9084
61 1G6H ADP 1.94553
62 4YFY 1YJ 1.9685
63 2PHN GDP 1.9685
64 4INB 1F6 2.05479
65 1QF9 ALF 2.06186
66 1QF9 C5P 2.06186
67 1QF9 ADP 2.06186
68 1YTM ATP 2.11268
69 4XCZ FON 2.11268
70 4XCZ T3Q 2.11268
71 5VHC BEF ADP 2.11268
72 2A0W DIH 2.11268
73 1UM0 FMN 2.11268
74 5A3B APR 2.11268
75 2IO8 ADP 2.11268
76 2A92 NAI 2.11268
77 5X8G S0N 2.11268
78 2H21 SAM 2.11268
79 4EN4 GT1 2.11268
80 4EN4 ATP 2.11268
81 3ZF8 GDP 2.11268
82 4EN4 GT0 2.11268
83 3GD4 FAD 2.11268
84 1C3Q TZE 2.11268
85 3MN6 ATP 2.11268
86 3LRE ADP 2.11268
87 1PN4 HDC 2.14286
88 3KYG 5GP 5GP 2.20264
89 1S8F GDP 2.25989
90 1H5Q NAP 2.26415
91 5HCN GCP 2.29885
92 4MKG AP5 2.30415
93 5BYK A3P 2.3166
94 5BYK OAQ 2.3166
95 4X8O AP5 2.33645
96 1I0S FMN 2.36686
97 4G6I RS3 2.38095
98 1EWJ BLM 2.38095
99 6CDG PRO GLY LEU TRP LYS SER 2.39521
100 3V91 UPG 2.4055
101 3WB0 FEG 2.40964
102 5FVJ ACO 2.40964
103 2RGX AP5 2.42718
104 4U00 ADP 2.45902
105 3FYH ADP 2.46479
106 3HU3 AGS 2.46479
107 1A59 COA 2.46479
108 1CSI OAA 2.46479
109 1CSI CMX 2.46479
110 4XGU ADP 2.46479
111 5J6D 6H5 2.46479
112 3EWA ANP 2.46479
113 3ZFD ANP 2.46479
114 4E1Z 0MX 2.46479
115 1PHP ADP 2.46479
116 5L01 6Z4 2.46479
117 4RDI ATP 2.46479
118 2FHK MFN 2.46479
119 6BR9 6OU 2.46479
120 5F1V 3VN 2.46479
121 1C96 FLC 2.46479
122 5J60 FAD 2.46479
123 2EW1 GNP 2.48756
124 5XKT GNP 2.5
125 1F6B GDP 2.52525
126 2PL3 ADP 2.54237
127 1S5P LYS GLY GLY ALA ALY ARG HIS ARG 2.55319
128 4XF6 LIP 2.5641
129 4XF6 INS 2.5641
130 4XF6 ADP 2.5641
131 1ISI ENQ 2.64151
132 1ISI NCA 2.64151
133 2X77 GDP 2.6455
134 2GDJ ANP 2.65152
135 3D72 FAD 2.68456
136 3A4M ADP 2.69231
137 1JJ7 ADP 2.69231
138 3AQ4 GDP 2.71739
139 1GOT GDP 2.73973
140 5NJI 8Z2 2.79503
141 4NE2 ADP 2.8169
142 4NE2 SH2 2.8169
143 5AE2 FYC 2.8169
144 4IEE AGS 2.8169
145 4CLI 5P8 2.8169
146 1AMU AMP 2.8169
147 1Z6T ADP 2.8169
148 5AE2 FAD 2.8169
149 3MAG SAH 2.8169
150 3COB ADP 2.8169
151 5K5Z ANP 2.8169
152 4JYD SAH 2.8169
153 3LXN MI1 2.8169
154 1P72 ADP 2.8169
155 4R4U COA 2.8169
156 4H1V GNP 2.8169
157 3N9R TD3 2.8169
158 4RRG A3T 2.83688
159 2YOH WMJ 2.85714
160 3QBT GNP 2.87356
161 3TNF GNP 2.87356
162 4LHW GNP 2.87356
163 4YLG GDP 2.89017
164 4D79 ATP 2.89855
165 2BNF UTP 2.90456
166 4IQY AR6 2.91667
167 2V2V V12 2.95203
168 2CBZ ATP 2.95359
169 3GPO APR 2.97619
170 5DUS APR 2.97619
171 3UIE ANP 3
172 1J2J GTP 3.01205
173 1O3Y GTP 3.01205
174 4QOS ADP 3.01887
175 1B0U ATP 3.05344
176 1E6W NAD 3.07692
177 5VYQ FON 3.13725
178 5G41 AP5 3.13901
179 1OS1 ATP 3.16901
180 1OS1 PYR 3.16901
181 4B0T ADP 3.16901
182 1OXV ANP 3.16901
183 5H68 AGS 3.16901
184 1Y3A GDP 3.16901
185 3QVV A3P 3.16901
186 1TAD GDP 3.16901
187 1TAD ALF 3.16901
188 1SVK ALF GDP 3.16901
189 3FQ8 PMP 3.16901
190 4PX9 ADP 3.16901
191 3CKJ CIT 3.16901
192 2ZTS ADP 3.18725
193 1IBR GNP 3.24074
194 1Y63 ADP 3.26087
195 1M7G ADP 3.31754
196 1M7G ADX 3.31754
197 2IXE ATP 3.32103
198 4BUY F37 3.33333
199 4YMU ATP 3.33333
200 1I52 CTP 3.38983
201 2ORV 4TA 3.4188
202 1KO8 6PG 3.42857
203 2PVQ GSH 3.48259
204 4H6U ACO 3.5
205 5EP2 AZU 3.51562
206 5WS9 AMP 3.52113
207 2CXG GLC GLC 3.52113
208 2ZR9 DTP 3.52113
209 1RJ9 GCP 3.52113
210 6EL3 NAP 3.52113
211 5L3V GDP 3.52113
212 2CKM AA7 3.52113
213 6DA9 FMN 3.52113
214 3QT6 2P0 3.52113
215 5X9D 80F 3.52113
216 5I0H ADP BEF 3.52113
217 4UTG ANP 3.52113
218 2Q8M FBP 3.52113
219 3DZD ADP 3.52113
220 4KVA GTP 3.52113
221 5NUE NAD 3.52113
222 4C2X NHW 3.52113
223 5NUF NAD 3.52113
224 1Z83 AP5 3.57143
225 5NUL FMN 3.62319
226 5O4J 9KH 3.64964
227 5O4J SAH 3.64964
228 5O4J PJL 3.64964
229 5UIJ TYD 3.7037
230 3B5J 12D 3.7037
231 4C4P GNP 3.73832
232 3IID APR 3.79147
233 3E85 BSU 3.79747
234 4J3L AJ5 3.80952
235 1DUB CAA 3.83142
236 1XEX ATP 3.84615
237 3KTA AP5 3.84615
238 1VG8 GNP 3.86473
239 4S3R 7SA 3.87324
240 5WC2 ADP 3.87324
241 5C5H 4YB 3.87324
242 5ZBR ANP 3.87324
243 3NRR D16 3.87324
244 3NRR NAP 3.87324
245 1CT9 GLN 3.87324
246 2NCD ADP 3.87324
247 4GYS MLI 3.87324
248 3QKT ANP 3.87324
249 5BN3 ADP 3.87324
250 4LC1 GDP 3.87324
251 1F9V ADP 3.87324
252 5X40 ACP 3.87324
253 6A20 ADP 3.87324
254 1Z2P ACP 3.87324
255 1Z2P I3S 3.87324
256 5L3R GCP 3.87324
257 4Q9N 0WE 3.87324
258 4PPF FLC 3.87324
259 3IIJ ADP 3.88889
260 1Z0F GDP 3.91061
261 1OE0 TTP 3.91304
262 6BSL EVV 3.9604
263 1G0H IPD 3.96825
264 4WEI GLC GAL 3.97112
265 4BAS GNP 4.0201
266 4QM7 GTP 4.09357
267 1W4R TTP 4.10256
268 5H86 BCO 4.16667
269 5NWD 9C8 4.18848
270 3DC4 ADP 4.22535
271 4HAT GNP 4.22535
272 6CIT GNP 4.22535
273 5UWO GNP 4.22535
274 4GIM PSU 4.22535
275 3WYF GTP 4.22535
276 5DIF GNP 4.22535
277 5UWH GNP 4.22535
278 5DI9 GNP 4.22535
279 5UWW GNP 4.22535
280 5UWT GNP 4.22535
281 5DHF GNP 4.22535
282 5UWJ GNP 4.22535
283 5UWU GNP 4.22535
284 5UWS GNP 4.22535
285 5UWR GNP 4.22535
286 5UWI GNP 4.22535
287 5UWQ GNP 4.22535
288 6AU6 GDP 4.22535
289 5O59 GS1 GLC GS1 4.22535
290 1L2T ATP 4.25532
291 3VPC ADP 4.25532
292 2XTN GTP 4.2735
293 1ZJ6 G3D 4.27807
294 2DJH 3PD UM3 4.34783
295 2ZEJ GDP 4.34783
296 4K6B GLU 4.34783
297 2HF9 GSP 4.42478
298 3H0L ADP 4.57746
299 4TVD BGC 4.57746
300 3SMA ACO 4.57746
301 2Q2Y ADP 4.57746
302 2Q2Y MKR 4.57746
303 6G14 G4P 4.57746
304 5MST FUM 4.57746
305 4Z87 5GP 4.57746
306 1B7T ADP 4.57746
307 3SSO SAH 4.57746
308 3OH3 UAD 4.57746
309 5EXT ADP 4.61538
310 2HV8 GTP 4.6875
311 2QIE 8CS 4.72973
312 2ZE7 DST 4.74308
313 2ZE7 AMP 4.74308
314 1U7Z PMT 4.86726
315 4NG2 OHN 4.8913
316 1UKZ ADP 4.92611
317 1UKZ AMP 4.92611
318 4JSR 1NQ 4.92958
319 4I9A NCN 4.92958
320 4OUJ LBT 4.92958
321 1RPN GDP 4.92958
322 1QPG MAP 4.92958
323 3HNA SAH 4.92958
324 4RKK GLC GLC GLC GLC GLC GLC 4.92958
325 4Y4V DAL 4.92958
326 3PCR GTP 4.93827
327 2EW5 Y12 4.97238
328 1MR3 G3D 4.97238
329 2PEZ DAT 5.02793
330 2PEZ GGZ 5.02793
331 1VHT BA3 5.04587
332 4MKF AP5 5.06912
333 4D0G GTP 5.14286
334 4EBZ NAG NAG NAG NAG 5.18868
335 5W75 SUC 5.28169
336 3KJS NAP 5.28169
337 2JLR ANP 5.28169
338 1I2B NAD 5.28169
339 1I2B USQ 5.28169
340 1I2B UPG 5.28169
341 5VJE GOS 5.28169
342 5IRN ADP 5.28169
343 4ZAC 4LU 5.28169
344 2PO3 T4K 5.28169
345 5FTB ANP 5.28169
346 5FHD ADP ALF 5.28169
347 4NCN GTP 5.28169
348 3LU1 NAD 5.28169
349 3ZSN MIV 5.28169
350 5Z69 AGS 5.28169
351 1Z0J GTP 5.29412
352 4KAX GTP 5.32544
353 1ZUI SKM 5.35714
354 1WVC CTP 5.40541
355 1B4P GPS 5.52995
356 3N5C GDP 5.55556
357 2OM2 GDP 5.55556
358 4YEE 4CQ 5.55556
359 5DY5 5GR 5.6338
360 4N4J HG1 5.6338
361 1WDT GTP 5.6338
362 4BFW ZVW 5.6338
363 2CE7 ADP 5.6338
364 4TTQ ATP 5.6338
365 4B7P 9UN 5.65217
366 4UA3 COA 5.6701
367 4QRH 0O2 5.71429
368 2OFW ADX 5.76923
369 4KYQ FLC 5.76923
370 3RG9 WRA 5.83333
371 3RG9 NDP 5.83333
372 4RR7 A3S 5.88235
373 2VBU CDP 5.88235
374 1YVD GNP 5.91716
375 3G5N PB2 5.98592
376 1V8K ANP 5.98592
377 2C9O ADP 5.98592
378 1MV8 NAD 5.98592
379 4CU1 71S 5.98592
380 5FSY AR6 6.01504
381 6B8B ADP 6.0241
382 4OOP DUP 6.0241
383 5T0K SAM 6.04982
384 3OVR 5SP 6.14035
385 1M5W DXP 6.17284
386 4ZNL BEF ADP 6.20438
387 3M1I GTP 6.28272
388 5WYZ 7VF 6.33803
389 3G5D 1N1 6.33803
390 4HXY NDP 6.33803
391 5UGH 8AJ 6.33803
392 5USZ SKE 6.33803
393 3Q9O NAD 6.33803
394 4NVQ 2OD 6.33803
395 4NVQ SAH 6.33803
396 2CJF RP4 6.36943
397 1G16 GDP 6.47059
398 2FH5 GTP 6.48649
399 2QQ0 THM 6.52174
400 2QQ0 ANP 6.52174
401 2QQ0 ADP 6.52174
402 2QQ0 TMP 6.52174
403 2J4K U5P 6.63717
404 1OG1 TAD 6.63717
405 1R4A GNP 6.66667
406 3ZIA ATP 6.69014
407 3ZIA ADP 6.69014
408 6B4K ANP 6.69014
409 3MD0 GDP 6.69014
410 4LX0 BEF GDP 6.69014
411 3AB4 THR 6.74157
412 5UQW GDP 6.87831
413 1ZIN AP5 6.91244
414 4NU0 AP5 6.91244
415 4OI4 ATP 6.95652
416 1HTW ADP 6.96203
417 4JD3 PLM 7.04225
418 4JD3 COA 7.04225
419 5VGR GDP 7.04225
420 4HI0 GDP 7.08661
421 4TL6 ANP 7.11462
422 1LSS NAD 7.14286
423 5M45 AMP 7.14286
424 3BC1 GNP 7.17949
425 1F2U ATP 7.38255
426 1HE1 AF3 7.38636
427 1X6V ADP 7.39437
428 6CQW HI6 7.39437
429 2H7C SIA 7.39437
430 3A1I UNU 7.39437
431 5CZY SAM 7.39437
432 3DJF BC3 7.39437
433 4ZAD 4LU 7.39437
434 3PE2 E1B 7.4184
435 1K27 MTM 7.42049
436 5O2T GSP 7.69231
437 4TMZ GSP 7.74648
438 3TK1 GDP 7.74648
439 5Y4R C2E 7.74648
440 5XLY C2E 7.82918
441 1S3G AP5 7.8341
442 2QG6 NMN 8.0402
443 1FQJ GDP 8.16327
444 1FQK GDP 8.16327
445 1KZL CRM 8.17308
446 4WOP CTP 8.44444
447 2JG1 ANP 8.4507
448 4B74 1LH 8.4507
449 3G5S GSH 8.4507
450 5EE5 GTP 8.4507
451 5L3S GNP 8.4507
452 2AWN ADP 8.4507
453 3RLF ANP 8.4507
454 3QV1 NAD 8.53659
455 2BNE U5P 8.71369
456 2UZI GTP 8.77193
457 2VB6 ADP BEF 8.80282
458 4JWH SAH 8.80282
459 1T36 ADP 8.80282
460 5Y6N ADP 8.80282
461 3VC1 SAH 8.80282
462 2A5F GTP 8.80829
463 5WLB GNP 8.82353
464 2J59 GTP 8.92857
465 5M3E APR 9.09091
466 5OEC GDP 9.28962
467 1W0J ADP 9.50704
468 2CK3 ANP 9.50704
469 2V7Q ATP 9.50704
470 1VA6 ADP 9.50704
471 1VA6 P2S 9.50704
472 1W0J ADP BEF 9.50704
473 2CK3 ADP 9.50704
474 4K81 GTP 9.68992
475 3FB4 AP5 9.72222
476 5N1Z 8GQ 9.7561
477 4GLL NAD 9.85915
478 1LO8 4CA 9.92908
479 1TQ4 GDP 10.2113
480 1LVK MNT BEF 10.2113
481 1UJ2 C5P 10.3175
482 1UJ2 ADP 10.3175
483 6EQS BV8 10.5455
484 5CPS GLC GLC GLC GLC GLC GLC GLC GLC 10.5634
485 5CPS GLC GLC GLC GLC GLC GLC GLC GLC GLC 10.5634
486 1B8O IMH 10.5634
487 1WDK ACO 10.5634
488 1WDK NAD 10.5634
489 2D2I NAP 10.9155
490 4D86 ADP 11.2676
491 1SB8 NAD 11.2676
492 4JWF SAH 11.5207
493 3TMK T5A 11.5741
494 1Z0K GTP 11.6279
495 2W83 GTP 11.6883
496 3WR7 COA 11.7647
497 2CHG ANP 11.9469
498 4J56 FAD 12.2807
499 5OFI 9TQ 12.2951
500 1LBZ FBP 12.3016
501 3H86 AP5 12.5
502 3EWP APR 12.9944
503 5EHZ 5NZ 13.3803
504 1I1D 16G 13.6646
505 5O74 GDP 13.8889
506 5XDR ADP 14.0845
507 1UPT GTP 15
508 6FAA ADP 16.1972
509 5J1S ATP 16.2602
510 2XT3 ADP 16.5493
511 3SFV GDP 18.232
512 5KUT GDP 19.5767
513 1ZEI CRS 20.7547
514 3TKL GTP 23.4694
515 3NKV GNP 25.7143
516 5UWP GNP 26.3158
Pocket No.: 2; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5h4s.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: 319
This union binding pocket(no: 3) in the query (biounit: 5h4s.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 2F9L GDP None
2 1M4I PAP None
3 1OIV GDP None
4 2C3H GLC GLC None
5 1M4I COA None
6 1M4I KAN None
7 5BUK FAD 1.05634
8 2XTZ GSP 1.05634
9 1Z4O GL1 1.35747
10 4NTK ZSP 1.65289
11 4NTM 2K8 1.65289
12 5TVJ COA 1.76056
13 5UY8 AMZ 1.76056
14 3D04 SAK 1.88679
15 4OEE GNX IDY 1.93548
16 3A1S GDP 1.93798
17 2RDE C2E 1.99203
18 4MZQ 1VU 2.08333
19 1F0X FAD 2.11268
20 3ABI NAD 2.11268
21 1NY5 ADP 2.11268
22 1CR1 TTP 2.11268
23 3H8V ATP 2.11268
24 2FR1 NDP 2.11268
25 3IO3 ADP 2.11268
26 1EZ0 NAP 2.11268
27 5CK5 GDP 2.11268
28 2ZFI ADP 2.11268
29 4LWA Q13 2.11268
30 5J1J ANP 2.11268
31 2D24 XYS XYS 2.11268
32 3H4L ANP 2.11268
33 3WXM GTP 2.11268
34 3BXF 13P 2.35294
35 3Q72 GNP 2.40964
36 4XPL ACO 2.45399
37 2QEN ADP 2.46479
38 1R6B ADP 2.46479
39 5IRR GSP 2.46479
40 2EFX NFA 2.46479
41 3H78 BE2 2.46479
42 2FAH GDP 2.46479
43 4YS0 ADP 2.46479
44 6HLX G9Z 2.46479
45 1PUJ GNP 2.48227
46 4C5N PXL 2.53623
47 4C5N ACP 2.53623
48 2QIA U20 2.67176
49 2PT9 2MH 2.80374
50 2PT9 S4M 2.80374
51 3TBK ANP 2.8169
52 5FI4 5XV 2.8169
53 6BQ6 TER 2.8169
54 4CZG ADP 2.8169
55 3TFJ THG 2.8169
56 1GOJ ADP 2.8169
57 3QXY SAM 2.8169
58 2DPY ADP 2.8169
59 5HR5 ADP 2.8169
60 2GJ8 ALF GDP 2.90698
61 2PX8 MGT 2.97398
62 5CUQ NSC 2.99625
63 3UIE ADX 3
64 3F9W SAH 3.01205
65 1S9D GDP 3.04878
66 2QZ4 ADP 3.05344
67 3TAY MN0 3.06748
68 4WZV E40 3.125
69 5AK0 8V1 3.16901
70 6C1S EFV 3.16901
71 4G5H UD7 3.16901
72 4G5H NAP 3.16901
73 3B8Y ADA ADA ADA ADA 3.16901
74 3CPJ GDP 3.16901
75 2IYL GDP 3.16901
76 5VC5 96M 3.16901
77 3PUN FUC GAL NDG FUC 3.16901
78 1K6M AGS 3.16901
79 4AT0 FAD 3.16901
80 4D57 ARG AMP 3.16901
81 1IYK MYA 3.16901
82 5LB3 ADP 3.16901
83 1BH2 GSP 3.16901
84 2I7C AAT 3.18021
85 4XUC SAM 3.21101
86 4XUC 43G 3.21101
87 3SIG AR6 3.2491
88 1JAY NAP 3.30189
89 1JAY F42 3.30189
90 6CEN SAM 3.50877
91 2FXU BID 3.52113
92 2BIF ANP 3.52113
93 2BIF SIN 3.52113
94 5KSZ GCP 3.52113
95 5MU6 KFK 3.52113
96 5MU6 MYA 3.52113
97 4ZA8 4LU 3.52113
98 4ZA8 F5C 3.52113
99 4ZA8 FZZ 3.52113
100 2ZPA ADP 3.52113
101 4M38 SAH 3.52113
102 4M37 SAH 3.52113
103 1H5T TYD 3.52113
104 6A8H AHR AHR AHR 3.52113
105 4WZ6 ATP 3.52113
106 2V6G NAP 3.52113
107 2OZE AGS 3.52113
108 1YZQ GNP 3.52941
109 2XWL CTP 3.58744
110 5LEF GTP 3.66492
111 5CIC 51R 3.7037
112 3TE4 ACO 3.72093
113 2PGJ N1C 3.81679
114 5MLR GRQ 3.87324
115 5MLR NAP 3.87324
116 1QMG APX 3.87324
117 3ZQ6 ADP ALF 3.87324
118 2I0K FAD 3.87324
119 5Y72 DST 3.87324
120 4I94 ANP 3.87324
121 4PJT 2YQ 3.87324
122 4FMU 0UM 3.95683
123 2CDN ADP 3.9801
124 1A4R GNH 4.18848
125 1A4R GDP 4.18848
126 3UYK 0CX 4.22535
127 5YSQ INS 4.22535
128 3OIX FMN 4.22535
129 2WOJ ADP ALF 4.22535
130 6B5K TYD 4.22535
131 4QYS PLR 4.22535
132 5UJ3 CE4 4.22535
133 6HH6 A3R 4.22535
134 3L4S 3PG 4.22535
135 1WUU ANP 4.22535
136 5U32 GDP 4.23729
137 1VG1 GDP 4.32432
138 3KJI ADP 4.33071
139 2JAQ DCP 4.39024
140 2B8T THM 4.4843
141 5XC5 GTP 4.54545
142 3FVQ ATP 4.57746
143 4LYA ATP 4.57746
144 3GDH MGP 4.57746
145 2R3A SAM 4.57746
146 2AJ4 ANP 4.57746
147 5ENZ UDP 4.57746
148 2G50 ALA 4.57746
149 4AG5 ADP 4.57746
150 1SQ5 ADP 4.57746
151 1R0X ATP 4.57746
152 1Z0A GDP 4.5977
153 5KSP GDP 4.73684
154 5V59 8X1 4.92958
155 3UR0 SVR 4.92958
156 2RFI SAH 4.92958
157 4R43 GDP 4.92958
158 6EJI UD2 4.92958
159 1VJT NAD 4.92958
160 5JIY SAM 5.10949
161 3ESS 18N 5.21739
162 1TU3 GNP 5.26316
163 5BVA FAD 5.28169
164 1VG9 GDP 5.28169
165 1VG0 GDP 5.28169
166 2WHX ADP 5.28169
167 1BW9 NAD 5.28169
168 1R2Q GNP 5.29412
169 1W7J ADP BEF 5.29801
170 2XBP ATP 5.30973
171 1ZC3 GNP 5.30973
172 3UNN MET GLU ASP TPO GLN ALA ILE ASP 5.30973
173 2BCG GDP 5.33981
174 3MJH GTP 5.35714
175 5TUZ SAM 5.36398
176 5TUZ 7L6 5.36398
177 2DT9 THR 5.38922
178 1KAO GDP 5.38922
179 1JI0 ATP 5.41667
180 2JDC CAO 5.47945
181 5FUW THM 5.49451
182 5FUW QBT 5.49451
183 5D4V SAH 5.59701
184 4UWJ MYA 5.6338
185 4UWJ 7L5 5.6338
186 2YNC YNC 5.6338
187 2YNE YNE 5.6338
188 2YNE NHW 5.6338
189 5M7P ADP 5.6338
190 2X06 NAD 5.6338
191 5OGX FAD 5.6338
192 3A76 SPD 5.68182
193 2A19 ANP 5.71429
194 2FFQ GSP 5.84795
195 1YZN GNP 5.94595
196 2WSA 646 5.98592
197 2WSA MYA 5.98592
198 1FP6 ADP 5.98592
199 1IN4 ADP 5.98592
200 4DXD GDP 5.98592
201 1NJF AGS 6
202 1NJF ADP 6
203 5HS2 CTP 6.03448
204 4B8V NDG NAG NAG NAG 6.14035
205 6BSX E7S 6.17978
206 6BSX GDP 6.17978
207 5G3Y ADP 6.19469
208 4M4Q 21A 6.22407
209 3WBZ ATP 6.27306
210 2WDQ TEO 6.30252
211 1TMM APC 6.32911
212 1TMM HHR 6.32911
213 4WZA ACP 6.33803
214 4WZA ADP 6.33803
215 5JCZ GDP 6.33803
216 2Z7R STU 6.33803
217 1M2O GNP 6.33803
218 5TVI O8N 6.52174
219 5GUF CTP 6.59341
220 4HSE ADP 6.69014
221 3HXU A5A 6.69014
222 1RE0 GDP 6.78733
223 5OCG GNP 6.87831
224 6FA4 GNP 6.93642
225 5TAR GDP 7.02703
226 2W2X GSP 7.02703
227 5TB5 GDP 7.02703
228 1GEG NAD 7.03125
229 2VVG ADP 7.04225
230 3DOE GTP 7.27273
231 2FJU GSP 7.30337
232 2A5J GDP 7.32984
233 1JNR FAD 7.33333
234 4XTR ATP 7.37327
235 4XVU ATP 7.37327
236 3GVL SLB SIA 7.39437
237 5MVR ADP 7.40741
238 4D81 ADP 7.42049
239 2C5L GTP 7.51445
240 1Z08 GNP 7.64706
241 1NXJ TLA 7.65027
242 5A89 ADP 7.69231
243 3N26 ARG 7.72358
244 5E95 GDP 7.7381
245 5HMY LNY 7.74648
246 2RCN GDP 7.74648
247 2FSH ANP 7.74648
248 1JQY A32 7.76699
249 6D56 GNP 7.78443
250 6D59 GNP 7.78443
251 6D5J GNP 7.78443
252 6D5E GNP 7.78443
253 6BVJ GNP 7.78443
254 6D55 GNP 7.78443
255 6D5H GNP 7.78443
256 6D5G GNP 7.78443
257 6D5L GNP 7.78443
258 6BVI GNP 7.78443
259 6BVL GNP 7.78443
260 6BVM GNP 7.78443
261 6BVK GNP 7.78443
262 1CLU DBG 7.83133
263 1WQ1 GDP 7.83133
264 3DDC GNP 7.83133
265 3KUD GDP 7.83133
266 3EC1 GDP 8.09859
267 3FWY ADP 8.09859
268 2FNA ADP 8.09859
269 2C94 TSF 8.125
270 1FQK ALF 8.16327
271 1FQJ ALF 8.16327
272 5C2N NAG 8.33333
273 6D5M GNP 8.38323
274 6D5V GNP 8.38323
275 1NVV GNP 8.43373
276 5L3W GDP 8.4507
277 4MIG G3F 8.4507
278 1KQF MGD 8.4507
279 2A9K GDP 8.55615
280 5YGE ACO 8.62069
281 3A1C ACP 8.80282
282 2JHP SAH 8.80282
283 4PFO ADP 8.80282
284 1Z06 GNP 8.99471
285 2BW7 APC 9.13242
286 4AG8 AXI 9.15493
287 4ZG4 VO4 ADP 9.15493
288 6H3O FAD 9.15493
289 2XNJ NAP 9.3985
290 5N69 ADP 9.54774
291 3FV1 DYH 9.76562
292 5OVK NDP 9.76562
293 5KK4 44E 10.4167
294 4CVN ADP 10.4712
295 1LAF ARG 10.5042
296 4YHB FAD 10.6227
297 4KVG GTP 10.7143
298 6BQK Z1E 10.9589
299 1SB8 UD2 11.2676
300 5VAH SAH 11.3537
301 5VBC SAH 11.3537
302 5VA6 SAH 11.3537
303 5VAC SAH 11.3537
304 1LFD GNP 11.4943
305 2OL1 UMP 11.5646
306 6CS8 F9Y 13.0282
307 2FAV APR 13.8889
308 5K2M ADP 13.9194
309 3KOX Z98 14.0496
310 5E4R NAP 14.0845
311 1X1R GDP 16.2921
312 1UAD GNP 17.1717
313 2XCF BBQ 17.3913
314 3KEE 30B 17.3913
315 1GHE ACO 18.0791
316 1S8G DAO 19.8347
317 3ZS9 ADP ALF 21.0526
318 2Q37 3AL 22.0994
319 5SZH GNP 22.1675
Pocket No.: 4; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5h4s.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: 171
This union binding pocket(no: 5) in the query (biounit: 5h4s.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 3E5H GNP None
2 5FDZ 5X0 None
3 3W5J GDP None
4 6CS9 PIO None
5 3DXY SAM None
6 5F1H 5U6 None
7 5ML0 P2L None
8 1YBU APC 1.08696
9 6FCH PRP 1.1236
10 5LW0 AR6 1.2987
11 3O0Q TTP 1.40845
12 4WB7 ATP 1.40845
13 3X0D SAH 1.76056
14 5WO4 B7V 1.76056
15 4D9C PMP 1.76056
16 3MVH WFE 1.76056
17 4O12 2QG 1.76056
18 5DJH AMP 1.76056
19 3TY5 ATP 1.76056
20 2E7Z MGD 2.11268
21 1VQW FAD 2.11268
22 1N0U SO1 2.11268
23 4FCW ADP 2.11268
24 6BSW UDP 2.11268
25 1ZD9 GDP 2.12766
26 4M9Q GNP 2.20264
27 1U7T TDT 2.29885
28 3RE4 TO1 2.32558
29 2Q46 NAP 2.37154
30 4E03 ADP 2.42718
31 1V9N NDP 2.46479
32 4YSW NAI 2.46479
33 1QHG ATP 2.46479
34 3DHV DAL AMP 2.46479
35 2HJR APR 2.46479
36 4R0M FA5 2.46479
37 1EK6 UPG 2.46479
38 1EK6 NAI 2.46479
39 3A7R LAQ 2.46479
40 4YSW FAD 2.46479
41 5IFS ADP 2.46479
42 3IS2 FAD 2.5974
43 2PYY GLU 2.63158
44 2RDK MAN MAN 2.75229
45 5LRT ADP 2.8169
46 4GV4 MEJ 2.8169
47 4CZG QH3 2.8169
48 6I6X H6B 2.8169
49 4IO2 GLU 2.82258
50 4R98 GNH 2.95203
51 1JG3 ADN 2.97872
52 1E3W NAD 3.06513
53 2NXE SAM 3.14961
54 3GJ0 GDP 3.16742
55 3GJ5 GDP 3.16742
56 3GJ4 GDP 3.16742
57 3GJ3 GDP 3.16742
58 1G6O ADP 3.16901
59 3B99 U51 3.16901
60 4YOI 4F4 3.16901
61 1DRV A3D 3.2967
62 1M7G AV2 3.31754
63 4GAH 0ET 3.34928
64 5LAU AR6 3.36538
65 6G96 ACO 3.40909
66 5MDH NAD 3.52113
67 4YAG NAI 3.52113
68 6CB2 OLC 3.52113
69 4LH0 GLV 3.52113
70 2B8W ALF 5GP 3.52113
71 4RIF 3R2 3.52113
72 5TIV A3P 3.55731
73 1D2N ANP 3.67647
74 3HRD FAD 3.75
75 4GOJ GNP 3.75
76 4ZY1 4U5 3.87324
77 1T5C ADP 3.87324
78 5BXQ GDP 3.93701
79 6BR8 6OU 3.96825
80 1WA5 GTP 3.97727
81 4NDO ATP 3.98551
82 1PQ7 ARG 4.01786
83 2B4D COA 4.09357
84 6EDV COA 4.12371
85 2BFR ADP 4.16667
86 4O67 1SY 4.22535
87 6DEF GCP 4.22535
88 5FFF NAP 4.28016
89 1U72 NDP 4.30108
90 1U72 MTX 4.30108
91 2EFE GNH 4.41989
92 1XUJ BOZ 4.4843
93 3T1O GDP 4.54545
94 1LVG ADP 4.54545
95 4DC2 ADE 4.57746
96 3T7V SAM 4.57746
97 2F2U M77 4.57746
98 1JG9 GLC 4.57746
99 5YVT NAI 4.57746
100 3RFA SAM 4.57746
101 4YLU R30 4.57746
102 1D2E GDP 4.57746
103 1ZK4 NAP 4.78088
104 2IL4 COA 4.85437
105 1ZVX FIN 4.90798
106 1KA1 A3P 4.92958
107 4RD0 GDP 4.92958
108 3V8S 0HD 4.92958
109 4NOS ITU 4.92958
110 4R57 ACO 5.11364
111 1NZY BCA 5.20446
112 1JXZ BCA 5.20446
113 4ZI2 GNP 5.26316
114 3NRZ FAD 5.28169
115 3GJX GTP 5.28169
116 4NBU CAA 5.28169
117 1F5N GNP 5.28169
118 3GC8 B45 5.28169
119 3LL4 2FP 5.28169
120 2IS6 ADP 5.28169
121 3OI7 OI7 5.28169
122 4IZC 1GZ 5.45455
123 3Q87 SAM 5.6
124 2YYJ 4HP 5.6338
125 4OHY ANP 5.6338
126 1ORR NAD 5.6338
127 4Y85 499 5.6338
128 1YNS HPO 5.74713
129 1QHH ATP 5.91716
130 1MV8 GDX 5.98592
131 2A2C NG1 5.98592
132 2A2C ADP 5.98592
133 1MUU NAD 5.98592
134 2CWH NDP 5.98592
135 2WIC GNP 5.99251
136 3WYG GTP 6.59341
137 3FPZ AHZ 6.69014
138 2I7N ACO 6.69014
139 3UG4 AHR 6.69014
140 3FSY SCA 6.69014
141 2F69 SAH 6.89655
142 4C4A SAH 7.04225
143 4UXH T5A 7.06522
144 1IG3 VIB 7.60456
145 1BO4 COA 7.7381
146 2ABS ACP 7.74648
147 5G5G FAD 7.74648
148 4IXH Q21 7.74648
149 1KK8 BEF ADP 7.79221
150 5UIV ADP 7.92952
151 3IWD M2T 8.06452
152 5YGE GLU 8.62069
153 2BW7 ECS 9.13242
154 5CAE SIN 9.15493
155 5CAE COA 9.15493
156 4NON GDP 9.23077
157 3B82 NAD 9.66184
158 4J0Q GDP 9.85915
159 2P8O BVA 9.92366
160 1NRJ GTP 10.1266
161 2D7D ADP 10.2113
162 4C3Y ANB 10.2113
163 3KJQ B94 10.5263
164 3GJ8 GDP 10.8696
165 1WWZ ACO 11.3208
166 2NU8 COA 11.6197
167 3EWR APR 13.0952
168 3GJ7 GDP 13.2653
169 4PC3 GDP 13.7324
170 3U6B GDP 13.7324
171 3CH5 GDP 23.0769
Pocket No.: 6; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 5h4s.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
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