Receptor
PDB id Resolution Class Description Source Keywords
5H4S 1.8 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF A RHAMNOSE-BINDING LECTIN SUL-I FROM TH TOXOPNEUSTID SEA URCHIN TOXOPNEUSTES PILEOLUS TOXOPNEUSTES PILEOLUS RHAMNOSE-BINDING LECTIN SUL-I SEA URCHIN TOXOPNEUSTES PILLECTIN SUGAR BINDING PROTEIN
Ref.: CARBOHYDRATE RECOGNITION BY THE RHAMNOSE-BINDING LE SUL-I WITH A NOVEL THREE-DOMAIN STRUCTURE ISOLATED VENOM OF GLOBIFEROUS PEDICELLARIAE OF THE FLOWER SE TOXOPNEUSTES PILEOLUS PROTEIN SCI. V. 26 1574 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
RAM A:302;
A:301;
A:303;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
164.156 C6 H12 O5 C[C@H...
PO4 A:304;
Invalid;
none;
submit data
94.971 O4 P [O-]P...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5H4S 1.8 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF A RHAMNOSE-BINDING LECTIN SUL-I FROM TH TOXOPNEUSTID SEA URCHIN TOXOPNEUSTES PILEOLUS TOXOPNEUSTES PILEOLUS RHAMNOSE-BINDING LECTIN SUL-I SEA URCHIN TOXOPNEUSTES PILLECTIN SUGAR BINDING PROTEIN
Ref.: CARBOHYDRATE RECOGNITION BY THE RHAMNOSE-BINDING LE SUL-I WITH A NOVEL THREE-DOMAIN STRUCTURE ISOLATED VENOM OF GLOBIFEROUS PEDICELLARIAE OF THE FLOWER SE TOXOPNEUSTES PILEOLUS PROTEIN SCI. V. 26 1574 2017
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 5H4S - RAM C6 H12 O5 C[C@H]1[C@....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 5H4S - RAM C6 H12 O5 C[C@H]1[C@....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 5H4S - RAM C6 H12 O5 C[C@H]1[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RAM; Similar ligands found: 9
No: Ligand ECFP6 Tc MDL keys Tc
1 FCB 1 1
2 FUC 1 1
3 FCA 1 1
4 XXR 1 1
5 G6D 1 1
6 RAM 1 1
7 RM4 1 1
8 FUL 1 1
9 FUF 0.424242 0.846154
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5h4s.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5h4s.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 5h4s.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5h4s.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 5h4s.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 5H4S; Ligand: RAM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 5h4s.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
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