-->
Receptor
PDB id Resolution Class Description Source Keywords
5EY0 1.6 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF CODY FROM STAPHYLOCOCCUS AUREUS WITH GT STAPHYLOCOCCUS AUREUS (STRAIN MU3 / AT700698) GTP-SENSING PLEIOTROPIC TRANSCRIPTION REGULATOR TRANSCRIPT
Ref.: THE STRUCTURE OF THE PLEIOTROPIC TRANSCRIPTION REGU CODY PROVIDES INSIGHT INTO ITS GTP-SENSING MECHANIS NUCLEIC ACIDS RES. V. 44 9483 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GTP A:302;
B:302;
Valid;
Valid;
none;
none;
Kd = 2.26 mM
523.18 C10 H16 N5 O14 P3 c1nc2...
ILE A:301;
B:301;
Valid;
Valid;
none;
none;
submit data
131.173 C6 H13 N O2 CC[C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5EY0 1.6 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF CODY FROM STAPHYLOCOCCUS AUREUS WITH GT STAPHYLOCOCCUS AUREUS (STRAIN MU3 / AT700698) GTP-SENSING PLEIOTROPIC TRANSCRIPTION REGULATOR TRANSCRIPT
Ref.: THE STRUCTURE OF THE PLEIOTROPIC TRANSCRIPTION REGU CODY PROVIDES INSIGHT INTO ITS GTP-SENSING MECHANIS NUCLEIC ACIDS RES. V. 44 9483 2016
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 5EY1 Kd = 2.26 mM GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
2 5EY0 Kd = 2.26 mM GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 5EY1 Kd = 2.26 mM GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
2 5EY0 Kd = 2.26 mM GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 5EY1 Kd = 2.26 mM GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
2 5EY0 Kd = 2.26 mM GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GTP; Similar ligands found: 156
No: Ligand ECFP6 Tc MDL keys Tc
1 GTP 1 1
2 GP3 0.921053 0.973684
3 GDP 0.909091 1
4 GSP 0.853659 0.948718
5 GNH 0.82716 0.986667
6 G1R 0.819277 0.986667
7 GAV 0.811765 0.961039
8 9GM 0.809524 0.973684
9 GNP 0.809524 0.973684
10 GCP 0.797619 0.973684
11 5GP 0.797468 0.986486
12 G 0.797468 0.986486
13 GMV 0.764706 0.973684
14 G2R 0.764045 0.961039
15 G5P 0.755319 0.973684
16 GTG 0.752688 0.936709
17 G2P 0.747126 0.961039
18 G3A 0.744681 0.973684
19 GDD 0.741935 0.961039
20 GDC 0.741935 0.961039
21 GKE 0.741935 0.961039
22 0O2 0.736264 0.986486
23 GP2 0.729412 0.961039
24 6CK 0.726316 0.936709
25 Y9Z 0.723404 0.902439
26 GPG 0.717391 0.961039
27 GFB 0.715789 0.961039
28 GDR 0.715789 0.961039
29 GPD 0.704082 0.925
30 GKD 0.693878 0.961039
31 JB2 0.693878 0.961039
32 GDX 0.686869 0.973684
33 ALF 5GP 0.685393 0.888889
34 GH3 0.681319 0.973333
35 YGP 0.677083 0.901235
36 G3D 0.67033 0.986486
37 GDP AF3 0.659574 0.888889
38 ALF GDP 0.659574 0.888889
39 GDP ALF 0.659574 0.888889
40 DGT 0.659341 0.923077
41 GMP 0.658228 0.88
42 G4P 0.655914 0.986486
43 JB3 0.653846 0.948718
44 NGD 0.647619 0.961039
45 CAG 0.642202 0.880952
46 2MD 0.62963 0.891566
47 MGP 0.619565 0.961039
48 U2G 0.616822 0.936709
49 6G0 0.612903 0.961039
50 MGD 0.612613 0.891566
51 TPG 0.608696 0.840909
52 CG2 0.605505 0.936709
53 GDP 7MG 0.601942 0.911392
54 FEG 0.601852 0.879518
55 G G 0.598039 0.948052
56 ZGP 0.59633 0.869048
57 PGD 0.591304 0.925
58 MD1 0.591304 0.891566
59 3GP 0.590909 0.946667
60 GPX 0.581633 0.946667
61 DGI 0.580645 0.923077
62 IDP 0.576087 0.972973
63 DBG 0.567797 0.948718
64 2GP 0.555556 0.96
65 FE9 0.555556 0.776596
66 G4M 0.547619 0.880952
67 BGO 0.544643 0.924051
68 GCP G 0.543689 0.921053
69 ATP 0.537634 0.92
70 HEJ 0.537634 0.92
71 G1G 0.533898 0.925
72 AQP 0.531915 0.92
73 5FA 0.531915 0.92
74 A G 0.525862 0.935065
75 G A A A 0.525862 0.923077
76 U A G G 0.521368 0.935065
77 HFD 0.520833 0.873418
78 R5I 0.520408 0.946667
79 R7I 0.520408 0.946667
80 01G 0.518868 0.902439
81 P2G 0.510638 0.883117
82 ITT 0.510638 0.868421
83 AKW 0.504348 0.890244
84 GGM 0.504274 0.901235
85 G1R G1R 0.504065 0.924051
86 DGP 0.5 0.910256
87 PGD O 0.5 0.850575
88 MGO 0.5 0.864198
89 DG 0.5 0.910256
90 P1G 0.5 0.871795
91 GTA 0.495495 0.936709
92 PRT 0.490741 0.959459
93 B4P 0.489362 0.894737
94 AP5 0.489362 0.894737
95 IMP 0.489362 0.959459
96 G U 0.487179 0.9
97 7DT 0.484536 0.906667
98 GPC 0.479339 0.879518
99 G C 0.478992 0.9
100 BA3 0.478723 0.894737
101 ADP 0.473684 0.92
102 G2Q 0.471698 0.961039
103 6YZ 0.470588 0.896104
104 G7M 0.46875 0.948052
105 C1Z 0.462963 0.986486
106 25L 0.458716 0.907895
107 A2D 0.457447 0.894737
108 RGT 0.45045 0.909091
109 AGS 0.45 0.873418
110 SAP 0.45 0.873418
111 SGP 0.44898 0.82716
112 A4P 0.445378 0.869048
113 G G G RPC 0.442623 0.875
114 ANP 0.441176 0.896104
115 ACQ 0.441176 0.896104
116 8GT 0.441176 0.875
117 APC G U 0.44 0.886076
118 AT4 0.438776 0.884615
119 G U34 0.438017 0.888889
120 6AD 0.436893 0.841463
121 G G G C 0.433071 0.9125
122 UP5 0.432203 0.873418
123 PCG 0.431373 0.933333
124 C2E 0.431373 0.921053
125 35G 0.431373 0.933333
126 A G C C 0.429688 0.911392
127 T99 0.427184 0.884615
128 5GP 5GP 0.427184 0.883117
129 TAT 0.427184 0.884615
130 AR6 0.425743 0.894737
131 APR 0.425743 0.894737
132 7DD 0.424242 0.906667
133 AN2 0.424242 0.907895
134 DG DG 0.423423 0.865854
135 AD9 0.421569 0.896104
136 M33 0.42 0.883117
137 7D4 0.42 0.835443
138 UCG 0.419847 0.911392
139 HDV 0.419048 0.825
140 H6Y 0.419048 0.946667
141 G C C C 0.416667 0.924051
142 ACP 0.415842 0.896104
143 T5A 0.414634 0.802326
144 A1R 0.412844 0.839506
145 ADQ 0.412844 0.871795
146 MGQ 0.412844 0.935897
147 A3R 0.412844 0.839506
148 MGT 0.411215 0.823529
149 A G U 0.410072 0.888889
150 93A 0.41 0.833333
151 A22 0.407407 0.907895
152 CA0 0.405941 0.896104
153 ATF 0.40566 0.884615
154 AGO 0.404762 0.888889
155 MGV 0.401786 0.890244
156 CGP 0.4 0.86747
Ligand no: 2; Ligand: ILE; Similar ligands found: 12
No: Ligand ECFP6 Tc MDL keys Tc
1 ILE 1 1
2 VAL 0.565217 0.727273
3 MD0 0.551724 0.655172
4 THR 0.541667 0.6
5 ALO 0.541667 0.6
6 VAH 0.538462 0.703704
7 DAL 0.5 0.714286
8 ALA 0.5 0.714286
9 DBB 0.5 0.782609
10 ABA 0.5 0.782609
11 NVA 0.428571 0.833333
12 LEU 0.428571 0.791667
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5EY0; Ligand: ILE; Similar sites found with APoc: 46
This union binding pocket(no: 1) in the query (biounit: 5ey0.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
1 4JIQ FMN 1.45985
2 4JIQ 1L5 1.45985
3 4JWH SAH 1.45985
4 3CTL S6P 1.7316
5 5CSD ACD 1.88679
6 2YG3 FAD 2.18978
7 4OE4 NAD 2.18978
8 2QE0 NAP 2.52632
9 1TD2 PXL 2.55474
10 4PNI KQQ 2.91971
11 1QZR ANP 2.91971
12 5FTW SAH 3.125
13 2GOU FMN 3.28467
14 3UP3 XCA 3.29218
15 2FV5 541 3.44828
16 2FNA ADP 3.64964
17 5H2D ERG 3.64964
18 2FZH DH1 3.8835
19 6CB2 OLC 4.0146
20 4X7Y SAH 4.0146
21 2HIM ASN 4.0146
22 3AYI HCI 4.37956
23 4D3S BOG 4.37956
24 1VR0 3SL 4.74453
25 3QJ4 FAD 4.74453
26 1T57 FMN 4.85437
27 5O1I 9GH 5.02283
28 3DCJ THH 5.11628
29 2TCL RO4 5.32544
30 2V0C LEU LMS 5.47445
31 5SYM 71Q 5.65217
32 3S0E EOL 5.88235
33 1SQK LAR 6.20438
34 4MDH NAD 6.20438
35 4C0R GDS 6.45161
36 4CZG QH3 6.93431
37 5BO9 SIA GAL NGS 7.66423
38 2ZPA ADP 8.0292
39 5ERR ADP 8.75912
40 5H4J FKM 9.14634
41 1Q3A NGH 9.69697
42 4C3Y ANB 9.85401
43 1Q5H DUD 10.2041
44 3HAZ FAD 11.6788
45 4JJF FE9 13.8686
46 4JJF N2I 13.8686
Pocket No.: 2; Query (leader) PDB : 5EY0; Ligand: GTP; Similar sites found with APoc: 341
This union binding pocket(no: 2) in the query (biounit: 5ey0.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 3KPE TM3 None
2 2GBB CIT None
3 2ALG DAO None
4 2ALG HP6 None
5 1LR8 IHS None
6 4HBM 0Y7 None
7 2WSB NAD None
8 1FK5 OLA None
9 4OAS 2SW None
10 2FKW RG1 None
11 5OYH T99 1.03627
12 3PXP MYR 1.45985
13 4E2J MOF 1.6
14 3GN8 DEX 1.60643
15 5UFS 1TA 1.6129
16 5N26 CPT 1.64835
17 2YPO PHE 1.82482
18 4LY9 S6P 1.82482
19 4LY9 1YY 1.82482
20 2Z7I 742 1.82482
21 4KP7 NAP 1.82482
22 4KP7 1UQ 1.82482
23 1ZGA HMK 1.82482
24 5B25 4QJ 1.82482
25 5C03 AGS 1.82482
26 1DMH LIO 1.82482
27 4XF6 ADP 1.8315
28 2HK5 1BM 1.85185
29 4PGK Y69 2.04918
30 4INW 1EY 2.14286
31 5TVI O8N 2.17391
32 4X8D AVI 2.18978
33 3ZPG 5GP 2.18978
34 5LUN OGA 2.18978
35 5LUN ARG 2.18978
36 5L7G 6QE 2.18978
37 4Z87 GDP 2.18978
38 2UW1 GVM 2.18978
39 5UIU 8CG 2.18978
40 3QCP FAD 2.18978
41 1T27 PCW 2.21402
42 4QC6 30N 2.23464
43 1XZ3 ICF 2.29885
44 1OAA OAA 2.3166
45 4L9Z OXL 2.35988
46 2ZCQ B65 2.55474
47 4LPG 1MV 2.55474
48 1TMX HGX 2.55474
49 2E9L BGC 2.55474
50 2E9L OLA 2.55474
51 2E9L PLM 2.55474
52 4BTK DTQ 2.55474
53 2Z48 NGA 2.55474
54 1Q7E MET 2.55474
55 3T58 FAD 2.55474
56 2VHW NAI 2.55474
57 1H9A NAP 2.55474
58 3LN0 52B 2.55474
59 2BHW NEX 2.58621
60 2BHW XAT 2.58621
61 1VL8 NAP 2.62172
62 4DP3 NDP 2.63158
63 1GEG GLC 2.73438
64 4KBS PX2 2.7907
65 4R57 ACO 2.84091
66 4XU6 TDA 2.85714
67 4F06 PHB 2.91971
68 1GNI OLA 2.91971
69 4OPC FDA 2.91971
70 4OPC PGT 2.91971
71 2EIX FAD 2.91971
72 5U97 PIT 2.91971
73 4DXJ IPE 2.91971
74 4DXJ 0M9 2.91971
75 5D2H AKG 2.91971
76 2VWA PTY 2.9703
77 3OKI OKI 3.00429
78 5Z3I ADE 3.01887
79 4B6C B5U 3.06122
80 3LLI FAD 3.06513
81 3LE7 ADE 3.06513
82 4OIV XX9 3.09735
83 4S1B 2BA 3.15315
84 3W6C NAG NAG 3.27869
85 5J6A P46 3.28467
86 3RI1 3RH 3.28467
87 4F7E 0SH 3.28467
88 2X24 X24 3.28467
89 3EKK GS2 3.28467
90 3BU5 ATP 3.28467
91 5VC5 96M 3.28467
92 4ZVI 4S4 3.28467
93 5LGA 6VH 3.28467
94 2QLU ADE 3.28467
95 1ZX5 LFR 3.28467
96 1AE1 NAP 3.2967
97 1GHE ACO 3.38983
98 2FV5 541 3.44828
99 4NB5 2JT 3.50877
100 4LAE 1VM 3.59281
101 4LAE NAP 3.59281
102 3AJH BL3 3.62903
103 4OMJ 2TX 3.64964
104 4UA3 COA 3.64964
105 3AGC RCC 3.64964
106 1OLM VTQ 3.64964
107 4LJ3 C2E 3.64964
108 4M4Q 21A 3.64964
109 2ZKJ ADP 3.64964
110 5Y02 MXN 3.73832
111 3KMZ EQO 3.7594
112 3O01 DXC 4.0146
113 2HKJ RDC 4.0146
114 6CB2 OLC 4.0146
115 3ITJ CIT 4.0146
116 4Y1B NAP 4.0146
117 5G5W R8C 4.0146
118 2NVA PL2 4.0146
119 3TGE TGE 4.0146
120 4HXY NDP 4.0146
121 1XON PIL 4.0146
122 4WQ2 3SU 4.04624
123 6FS0 E4W 4.18605
124 1H6H PIB 4.1958
125 1U3G THF 4.2328
126 5I8F ML1 4.24242
127 4LSJ LSJ 4.26357
128 1M2Z BOG 4.28016
129 1M2Z DEX 4.28016
130 4P6X HCY 4.31373
131 4Y9J UCC 4.37956
132 1EM6 CP4 4.37956
133 3AYI FAD 4.37956
134 3AYI HCI 4.37956
135 1WWZ ACO 4.37956
136 4RW3 PLM 4.37956
137 6BA2 7KM 4.37956
138 4MNS 2AX 4.40252
139 5UR6 8KM 4.41989
140 5B4B LP5 4.43548
141 1BWO LPC 4.44444
142 1S17 GNR 4.44444
143 4KVX ACO 4.48718
144 5HGZ ACO 4.52675
145 5IKH 6BW 4.54545
146 1SR7 MOF 4.6332
147 1XQP 8HG 4.6875
148 5JNN 6LM 4.73684
149 3TDC 0EU 4.74453
150 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 4.74453
151 3KDU NKS 4.74453
152 3FUR Z12 4.74453
153 4BIX ADP 4.74453
154 1K7L 544 4.74453
155 1QPR PPC 4.74453
156 1P0H ACO 4.74453
157 1UDY CS8 4.74453
158 2HFP NSI 4.74453
159 3G9E RO7 4.74453
160 3SP6 IL2 4.74453
161 1QPR PHT 4.74453
162 6BR8 6OU 4.7619
163 2NPA MMB 4.81482
164 5FQK 6NT 4.83271
165 3FEI CTM 4.86891
166 1Q2C COA 4.93827
167 3X1M COA 5.03145
168 2I0G I0G 5.05837
169 1YKI NFZ 5.06912
170 1YKI FMN 5.06912
171 4ZBR DIF 5.10949
172 4ZBR NPS 5.10949
173 5IM3 DTP 5.10949
174 5CX6 CDP 5.10949
175 3VRY B43 5.10949
176 3BP1 GUN 5.10949
177 1T8U UAP SGN IDS SGN 5.14706
178 3KU0 ADE 5.17928
179 4EJ1 FOL 5.22388
180 3IX9 MTX 5.26316
181 2B9I ADP 5.38244
182 2B9H ADP 5.38244
183 4R6W PC 5.42636
184 4R6W SAH 5.42636
185 4L80 OXL 5.47445
186 5VLQ ANP 5.47445
187 3WCA FPS 5.47445
188 4Q0A 4OA 5.47445
189 2CIX CEJ 5.47445
190 2JFZ 003 5.4902
191 2JFZ DGL 5.4902
192 3VRV YSD 5.53506
193 4KOT CE3 5.55556
194 5C1M OLC 5.6
195 3N7H DE3 5.6
196 4B7P 9UN 5.65217
197 3TL1 JRO 5.66038
198 1BGQ RDC 5.77778
199 4LA7 A1O 5.83942
200 4WVO 3UZ 5.83942
201 5JO1 6LM 5.83942
202 5IXK 6EW 5.83942
203 4DS8 A8S 5.83942
204 4I4B 1CV 5.83942
205 1FX8 BOG 5.83942
206 4WH9 3M8 6.01093
207 5DLY 5D7 6.01504
208 4ELG 52J 6.0241
209 4DE3 DN8 6.08365
210 2AE2 NAP 6.15385
211 3N7O N7O 6.19469
212 4XQC NAD 6.20438
213 4XQC 13D 6.20438
214 2Q2Y ADP 6.20438
215 2Q2Y MKR 6.20438
216 2BCG GER 6.20438
217 5EXK 5AD 6.20438
218 4UDB CV7 6.25
219 2A1L PCW 6.2963
220 5W7B MYR 6.38298
221 2GN2 C5P 6.43275
222 5DUF G7A 6.46388
223 5OLK DTP 6.51163
224 5M37 9SZ 6.52174
225 5M36 9SZ 6.55022
226 2JJK R15 6.56934
227 1ZPD CIT 6.56934
228 5G57 6M5 6.56934
229 1XKQ NDP 6.56934
230 2E3N 6CM 6.56934
231 3LXK MI1 6.56934
232 5FI3 NAP 6.56934
233 5HCV 60R 6.61479
234 2A3I C0R 6.71937
235 5NTP 98E 6.72269
236 4DV8 0LX 6.84411
237 2NNQ T4B 6.87023
238 2JHP GUN 6.93431
239 6C7D EOJ 6.93431
240 6CQF F97 6.93431
241 4PZ6 GMP 6.93431
242 6ALW BMJ 6.93431
243 3RDE OYP 6.93431
244 3ZLR X0B 6.96203
245 3WR7 COA 7.05882
246 6ESN BWE 7.11611
247 2QO4 CHD 7.14286
248 2EV1 OLA 7.20721
249 5CHR 4NC 7.29927
250 5UY8 AMZ 7.29927
251 1UPF URF 7.29927
252 5V4R MGT 7.40741
253 5Y6Q FAD 7.40741
254 2DRC MTX 7.54717
255 2HHP FLC 7.66423
256 3UG4 AHR 7.66423
257 2JBZ COA 7.69231
258 5OJI NAP 7.69231
259 5FVJ ACO 7.83133
260 3KO0 TFP 7.92079
261 4OHU 2TK 8.0292
262 4OHU NAD 8.0292
263 1ZED PNP 8.0292
264 4J7U YTZ 8.0292
265 4J7U NAP 8.0292
266 2Q6B HR2 8.0292
267 3E70 GDP 8.0292
268 3LDW ZOL 8.0292
269 4B7X NAP 8.39416
270 3KDJ A8S 8.41584
271 3AJM 4IP 8.4507
272 3L9R L9Q 8.48057
273 3L9R L9R 8.48057
274 3JRS A8S 8.65385
275 2ZB4 5OP 8.68347
276 1MGP PLM 8.75912
277 1VPV PLM 8.75912
278 1RDT 570 8.75912
279 4G86 BNT 9.12409
280 5K7K 6RJ 9.12409
281 5USZ SKE 9.12409
282 4ORM FMN 9.48905
283 4ORM ORO 9.48905
284 4ORM 2V6 9.48905
285 5LX9 OLB 9.48905
286 4OIC A8S 9.48905
287 1W5F G2P 9.48905
288 1T0S BML 9.85401
289 4MRP GSH 9.85401
290 1KC7 PPR 9.85401
291 3T6E UQ9 9.89011
292 5UGW GSH 10.2857
293 1L1Q 9DA 10.7527
294 3NMV PYV 10.9489
295 2QES ADE 11.1111
296 1HBK MYR 11.236
297 1EWF PC1 11.3139
298 3FW3 GLC 11.3139
299 4WZ8 3W7 11.6788
300 2CNT COA 11.875
301 4FHD 0TT 12.4088
302 4FHD EEM 12.4088
303 6H8S FSZ 12.4088
304 2VBQ BSJ 12.7273
305 3AIH BMA MAN MAN 12.9032
306 1DTL BEP 13.0435
307 4ZGM 32M 13.1148
308 4H07 IPH 13.6364
309 4BTB PRO PRO PRO PRO PRO PRO PRO PRO PRO 13.8075
310 3IA4 MTX 14.8148
311 4XPL ACO 15.3374
312 2Y69 CHD 15.7895
313 2XMY CDK 16.7883
314 2PRG BRL 17.0455
315 4NE2 SH2 17.5182
316 4NE2 ADP 17.5182
317 5BQI 4UL 18.8312
318 5BQI GSH 18.8312
319 5Z84 CHD 19.2661
320 5W97 CHD 19.2661
321 5ZCO CHD 19.2661
322 5ZCO TGL 19.2661
323 5Z84 TGL 19.2661
324 2DYS TGL 19.2661
325 2DYR TGL 19.2661
326 3RV5 DXC 20.2247
327 3KXC PLM 20.2532
328 3CV3 UDP 20.8029
329 5C2H 4XU 21.1679
330 5IVX ARG GLY PRO GLY ARG ALA PHE VAL THR ILE 22
331 3G08 FEE 22.2222
332 5C9J DAO 22.2222
333 4RJD TFP 22.7273
334 2WOR 2AN 23
335 5WL1 D3D 23.2323
336 5WL1 CUY 23.2323
337 5NNT DPV 24.3243
338 1NNU TCT 38.3333
339 1NNU NAD 38.3333
340 1O9U ADZ 44.4444
341 1M26 GAL A2G 47.0588
Pocket No.: 3; Query (leader) PDB : 5EY0; Ligand: ILE; Similar sites found with APoc: 14
This union binding pocket(no: 3) in the query (biounit: 5ey0.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
1 1H5T TYD 2.18978
2 3RUU 37G 3.05677
3 1PFY MSP 3.64964
4 3C6K MTA 4.0146
5 3C6K SPD 4.0146
6 5N5S NAP 5.10949
7 1IIM TTP 5.82192
8 1G79 PLP 5.9633
9 4CZG ADP 6.93431
10 4K81 GTP 7.36434
11 2OYS FMN 7.43802
12 6FYJ MYR 7.66423
13 4YBN FAD 8.92857
14 2G9Z VNP 14.2336
Pocket No.: 4; Query (leader) PDB : 5EY0; Ligand: GTP; Similar sites found with APoc: 93
This union binding pocket(no: 4) in the query (biounit: 5ey0.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 4YV5 SVR None
2 4WT2 3UD None
3 5HZ9 5M8 None
4 3AI3 SOE 1.52091
5 2Q1H AS4 1.6
6 5CSD ACD 1.88679
7 4QJL COA 2.12766
8 5MWY YNU 2.18978
9 2C78 PUL 2.18978
10 4QJK COA 2.55319
11 6C1R EFD 2.55474
12 1R6T TYM 2.55474
13 5N5U 7N8 2.55474
14 3B9Z CO2 2.55474
15 5TO8 7FM 2.55474
16 4P6W MOF 2.77778
17 3RG9 WRA 2.91667
18 1OLT SAM 2.91971
19 1FCH TYR GLN SER LYS LEU 2.91971
20 5EW9 5VC 2.95203
21 3V66 D3A 3.28467
22 5WIU AQD 3.28467
23 4UBS DIF 3.28467
24 1NF8 BOG 3.38164
25 2XOC ADP 3.44828
26 2YC5 6BC 3.50877
27 3SDV 911 3.64964
28 1DY4 SNP 3.64964
29 2H7C COA 3.64964
30 4X9X OLA 4.0146
31 4NTO 1PW 4.0146
32 3L9W AMP 4.0146
33 5DH3 5BS 4.0146
34 6GIN IR2 4.0146
35 2YAB AMP 4.0146
36 3KV8 FAH 4.31655
37 3HP9 CF1 4.37956
38 5OSW DIU 4.37956
39 5A9A UTP 4.52675
40 3TM0 B31 4.56274
41 3TM0 ANP 4.56274
42 4UCC ZKW 4.72103
43 1UDY FAD 4.74453
44 5J32 IPM 4.74453
45 2VQD AP2 4.74453
46 2P1C GG3 4.74453
47 4QHP 32Q 4.74453
48 1QNF HDF 5.10949
49 1QNF FAD 5.10949
50 1A05 IPM 5.47445
51 5GWT NAD 5.47445
52 5GWT SIN 5.47445
53 4O4F IHP 5.83942
54 4O4F ATP 5.83942
55 4QVH COA 5.83942
56 2JC9 ADN 5.83942
57 2AE2 PTO 6.15385
58 4TR9 38D 6.20438
59 2DKN NAI 6.27451
60 2QHD DAO 6.55738
61 3ETG GTP 6.56934
62 3E8N VRA 6.56934
63 3E8N ATP 6.56934
64 5X93 K87 6.56934
65 2J4D FAD 6.56934
66 5MTE BB2 6.56934
67 6FWH 5LD 6.59898
68 6ALW BNV 6.93431
69 1DNP FAD 6.93431
70 3G5N PB2 7.66423
71 4GJ3 0XP 7.66423
72 2XSU PIE 8.0292
73 3V49 PK0 8.27068
74 5LXT ACP 8.39161
75 3SMA ACO 8.39416
76 2Q8Z NUP 8.39416
77 3P3G 3P3 8.39416
78 3P3G UKW 8.39416
79 4WP9 ZDA 8.47458
80 5ODT ADP 8.69565
81 1VGV UD1 8.75912
82 6A0S NDP 9.12409
83 1VLH PNS 9.24856
84 1TV5 N8E 9.48905
85 1NP7 FAD 9.85401
86 4GU5 FAD 10.5839
87 2WPX ACO 12.3894
88 5Z84 PEK 19.2661
89 5ZCO PEK 19.2661
90 2DYR PEK 19.2661
91 5LWY OLB 21.8487
92 3RUG DB6 22.2222
93 5IJJ I6P 23.9583
APoc FAQ
Feedback