Receptor
PDB id Resolution Class Description Source Keywords
5E1O 2 Å EC: 2.1.1.244 CRYSTAL STRUCTURE OF NTMT1 IN COMPLEX WITH RPKRIA PEPTIDE HOMO SAPIENS METHYL TRANSFERASE STRUCTURAL GENOMICS STRUCTURAL GENOMICSCONSORTIUM SGC TRANSFERASE
Ref.: STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY THE H N-TERMINAL METHYLTRANSFERASE 1. GENES DEV. V. 29 2343 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
UNX A:318;
A:319;
A:312;
A:310;
B:316;
A:308;
A:317;
A:303;
A:311;
A:316;
B:308;
B:306;
B:313;
B:309;
A:309;
A:321;
A:306;
A:307;
B:304;
A:320;
B:303;
B:310;
B:317;
A:305;
A:315;
A:314;
B:312;
B:315;
B:311;
A:313;
A:322;
B:314;
B:307;
B:305;
B:318;
A:304;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
n/a X *
ARG PRO LYS ARG ILE ALA D:1;
E:1;
Valid;
Valid;
none;
Atoms found LESS than expected: % Diff = 0;
Kd = 0.3 uM
742.948 n/a O=C([...
GOL A:302;
B:302;
Invalid;
Invalid;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
SAH A:301;
B:301;
Valid;
Valid;
none;
none;
submit data
384.411 C14 H20 N6 O5 S c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5E1M 1.75 Å EC: 2.1.1.244 CRYSTAL STRUCTURE OF NTMT1 IN COMPLEX WITH PPKRIA PEPTIDE HOMO SAPIENS STRUCTURAL GENOMICS STRUCTURAL GENOMICS CONSORTIUM SGC TR
Ref.: STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY THE H N-TERMINAL METHYLTRANSFERASE 1. GENES DEV. V. 29 2343 2015
Members (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5E1O Kd = 0.3 uM ARG PRO LYS ARG ILE ALA n/a n/a
2 5CVE - SAH C14 H20 N6 O5 S c1nc(c2c(n....
3 6DTN Ki = 39 nM 6D6 PRO PRO LYS ARG ILE ALA NH2 n/a n/a
4 5E1M Kd = 2.8 nM PRO PRO LYS ARG ILE ALA n/a n/a
5 5E1B Kd = 0.8 uM SER PRO LYS ARG ILE ALA n/a n/a
6 5E2A - SAH C14 H20 N6 O5 S c1nc(c2c(n....
7 5E1D Kd = 0.1 uM TYR PRO LYS ARG ILE ALA n/a n/a
8 5CVD Kd = 0.39 uM DMG PRO ARG ARG ARG SER ARG LYS PRO n/a n/a
9 5E2B - SAH C14 H20 N6 O5 S c1nc(c2c(n....
70% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5E1O Kd = 0.3 uM ARG PRO LYS ARG ILE ALA n/a n/a
2 5CVE - SAH C14 H20 N6 O5 S c1nc(c2c(n....
3 6DTN Ki = 39 nM 6D6 PRO PRO LYS ARG ILE ALA NH2 n/a n/a
4 5E1M Kd = 2.8 nM PRO PRO LYS ARG ILE ALA n/a n/a
5 5E1B Kd = 0.8 uM SER PRO LYS ARG ILE ALA n/a n/a
6 5E2A - SAH C14 H20 N6 O5 S c1nc(c2c(n....
7 5E1D Kd = 0.1 uM TYR PRO LYS ARG ILE ALA n/a n/a
8 5CVD Kd = 0.39 uM DMG PRO ARG ARG ARG SER ARG LYS PRO n/a n/a
9 5E2B - SAH C14 H20 N6 O5 S c1nc(c2c(n....
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5E1O Kd = 0.3 uM ARG PRO LYS ARG ILE ALA n/a n/a
2 5CVE - SAH C14 H20 N6 O5 S c1nc(c2c(n....
3 6DTN Ki = 39 nM 6D6 PRO PRO LYS ARG ILE ALA NH2 n/a n/a
4 5E1M Kd = 2.8 nM PRO PRO LYS ARG ILE ALA n/a n/a
5 5E1B Kd = 0.8 uM SER PRO LYS ARG ILE ALA n/a n/a
6 5E2A - SAH C14 H20 N6 O5 S c1nc(c2c(n....
7 5E1D Kd = 0.1 uM TYR PRO LYS ARG ILE ALA n/a n/a
8 5CVD Kd = 0.39 uM DMG PRO ARG ARG ARG SER ARG LYS PRO n/a n/a
9 5E2B - SAH C14 H20 N6 O5 S c1nc(c2c(n....
10 1XTP - SAI C14 H20 N6 O5 Se c1nc(c2c(n....
11 6DUB - SAH C14 H20 N6 O5 S c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ARG PRO LYS ARG ILE ALA; Similar ligands found: 164
No: Ligand ECFP6 Tc MDL keys Tc
1 ARG PRO LYS ARG ILE ALA 1 1
2 TYR PRO LYS ARG ILE ALA 0.793103 0.878788
3 3BY PRO LYS ARG ILE ALA 0.732759 0.921875
4 PRO PRO LYS ARG ILE ALA 0.732759 0.966667
5 SER PRO LYS ARG ILE ALA 0.711712 0.904762
6 LYS PRO VAL LEU ARG THR ALA 0.691667 0.876923
7 THR LYS PRO ARG 0.609524 0.898305
8 5JP PRO LYS ARG ILE ALA 0.587719 0.833333
9 ARG PRO LYS PRO LEU VAL ASP PRO 0.575 0.918033
10 ARG PRO PRO ILE PHE ILE ARG ARG LEU 0.569343 0.936508
11 ARG PRO ARG PRO ASP ASP LEU GLU ILE 0.568182 0.936508
12 ARG LEU PRO ALA LYS ALA PRO LEU LEU 0.545455 0.935484
13 ARG GLN PRO ALA LYS ALA PRO LEU LEU 0.536765 0.920635
14 DPN PRO DAR ILE NH2 0.532787 0.901639
15 GLU ARG THR ILE PRO ILE THR ARG GLU 0.53125 0.90625
16 ARG ILE ILE PRO ARG HIS LEU GLN LEU 0.531034 0.907692
17 ALA ASN SER ARG ALA PRO THR SER ILE ILE 0.528986 0.852941
18 ARG PRO MET THR PHE LYS GLY ALA LEU 0.519231 0.780822
19 ARG PRO GLN VAL PRO LEU ARG PRO MET 0.517986 0.878788
20 ALA LEU PRO HIS ALA ILE LEU ARG LEU 0.517241 0.90625
21 ARG PRO MET THR TYR LYS GLY ALA LEU 0.515924 0.75
22 ALA ASN SER ARG VAL PRO THR SER ILE ILE 0.514925 0.878788
23 GLY GLU ARG THR ILE PRO ILE THR ARG GLU 0.514706 0.907692
24 LYS ALA PRO ARG ALY GLN LEU ALA THR LYS 0.511628 0.873016
25 ALA MET ALA PRO ARG THR LEU LEU LEU 0.511111 0.814286
26 ALA ASN SER ARG ALY PRO THR SER ILE ILE 0.510204 0.855072
27 THR PRO ARG ARG SER MLZ SER ALA 0.503937 0.826087
28 PRO SER ILE ASP ARG SER THR LYS PRO 0.503448 0.880597
29 ALA ILE MET PRO ALA ARG PHE TYR PRO LYS 0.503106 0.819444
30 ASN PRO ARG ALA MET GLN ALA LEU LEU 0.5 0.838235
31 ALA ARG MLZ SER ALA PRO ALA THR 0.5 0.84058
32 DPN PRO DAR DTH NH2 0.496 0.80303
33 LYS PRO LYS 0.495238 0.79661
34 ARG ARG ARG GLU ARG SER PRO THR ARG 0.492647 0.848485
35 ALA ASN SER ARG LEU PRO THR SER ILE ILE 0.492537 0.878788
36 ALA PHE ARG ILE PRO LEU THR ARG 0.489655 0.880597
37 ARG ILE PRO SER TYR ARG TYR ARG TYR 0.489209 0.805556
38 ALA ASN SER ARG TRP PRO ALY SER ILE ILE 0.487805 0.797297
39 PRO ARG PRO ILE LEU LEU PRO TRP ARG NH2 0.486667 0.863636
40 ARG ARG LEU PRO ILE PHE SER ARG LEU 0.486301 0.880597
41 ASN ARG PRO ILE LEU SER LEU 0.485075 0.865672
42 LEU PRO PHE ASP ARG THR THR ILE MET 0.48366 0.819444
43 ALA ASN SER ARG PHE PRO THR SER ILE ILE 0.483444 0.84058
44 GLY LEU LEU GLY SER PRO VAL ARG ALA 0.481752 0.861538
45 LEU PRO PHE GLU ARG ALA THR ILE MET 0.481013 0.805556
46 ASN ARG PRO VAL TYR ILE PRO ARG PRO PRO 0.479167 0.865672
47 VAL MET ALA PRO ARG ALA LEU LEU LEU 0.477941 0.876923
48 ACE GLN GLU ARG GLU VAL PRO CYS 0.477273 0.888889
49 CYS THR PRO SER ARG 0.47619 0.833333
50 SER HIS PRO ARG PRO ILE ARG VAL 0.475862 0.855072
51 ALA ASN SER ARG TYR PRO THR SER ILE ILE 0.473333 0.805556
52 MET CYS PRO ARG MET THR ALA VAL MET 0.472603 0.84058
53 DPN PRO DAR CYS NH2 0.472 0.809524
54 LEU PRO PRO GLU GLU ARG LEU ILE 0.470588 0.935484
55 GLU LEU PRO LEU VAL LYS ILE 0.470149 0.852459
56 ALA ARG LYS ILE ASP ASN LEU ASP 0.469697 0.723077
57 HIS HIS ALA SER PRO ARG LYS 0.469388 0.794118
58 PRO ARG ARG PRO VAL ILE MET ARG ARG 0.464789 0.876923
59 SER ALA PRO ASP THR ARG PRO ALA 0.463768 0.838235
60 GLY LEU LEU GLY SEP PRO VAL ARG ALA 0.462069 0.814286
61 ILE ARG TYR PRO LYS THR PHE GLY TRP 0.45977 0.783784
62 DTY ILE ARG LEU LPD 0.459259 0.835821
63 DPN PRO ARG 0.458333 0.852459
64 LEU PRO PRO VAL VAL ALA LYS GLU ILE 0.457746 0.854839
65 ALA PRO PRO PRO ARG PRO PRO LYS PRO 0.457364 0.868852
66 LYS ARG ARG ARG HIS PRO SER 0.457143 0.818182
67 LEU PRO LYS MYK THR GLY GLY 0.455172 0.75
68 LYS GLN GLU PRO GLN GLU ILE ASP PHE 0.453333 0.825397
69 ALA ALA ARG KCR SER ALA PRO ALA 0.451389 0.848485
70 ASP ARG VAL GLU LEU ASN ALA PRO ARG GLN 0.451389 0.876923
71 LEU PRO PHE ASP LYS THR THR ILE MET 0.45098 0.736111
72 LYS VAL PRO ARG ASN GLN ASP TRP LEU 0.449102 0.828571
73 GLN PRO PRO VAL PRO PRO GLN ARG PRO MET 0.448276 0.878788
74 ALA PRO ASP THR ARG PRO 0.44697 0.850746
75 SER LEU SER ARG THR PRO ALA ASP GLY ARG 0.445946 0.863636
76 SER ARG LYS ILE ASP ASN LEU ASP 0.445255 0.691176
77 ARG ARG ALA SEP ALA PRO LEU PRO 0.444444 0.802817
78 ALA PRO ASP THR ARG PRO ALA PRO 0.444444 0.850746
79 LYS ARG ARG ARG HIS PRO SER GLY 0.444444 0.782609
80 ILE ARG ALA ALA PRO PRO PRO LEU PHE 0.442953 0.921875
81 ASN PHE ASP ASN PRO VAL TYR ARG LYS THR 0.442424 0.77027
82 ALA ASN SER ARG HIS PRO THR SER ILE ILE 0.442177 0.855072
83 ALA PRO ALA LEU ARG VAL VAL LYS 0.441667 0.75
84 GLY HIS LYS ILE LEU HIS ARG LEU LEU GLN 0.440559 0.787879
85 THR PRO ARG VAL THR GLY GLY GLY ALA MET 0.439189 0.816901
86 ARG GLN ALA SEP ILE GLU LEU PRO SER MET 0.437126 0.776316
87 ALA ARG THR M3L GLN THR ALA ALA LYS ALA 0.437037 0.680556
88 SER GLU LEU GLU ILE LYS ARG TYR 0.43662 0.652778
89 SER PRO ARG LEU PRO LEU LEU GLU SER 0.43609 0.901639
90 VAL MET ALA PRO ARG THR LEU PHE LEU 0.435897 0.791667
91 ARG ASP ARG ALA ALA LYS LEU 0.435897 0.75
92 DMG PRO ARG ARG ARG SER ARG LYS PRO 0.435484 0.863636
93 HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP 0.435374 0.742424
94 LEU GLN ARG VAL LEU SEP ALA PRO PHE 0.433333 0.791667
95 ILE ARG LYS ILE LEU PHE LEU ASP GLY ILE 0.433333 0.738462
96 LEU ASP PRO ARG 0.433071 0.903226
97 LEU PRO PHE GLU ARG ALA THR VAL MET 0.432099 0.791667
98 ALA VAL PRO ILE ALA GLN 0.432 0.819672
99 SER SER GLY LYS VAL PRO LEU 0.431818 0.772727
100 HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU 0.431373 0.772727
101 LEU PRO PHE ASP LYS SER THR ILE MET 0.43125 0.726027
102 GLU VAL ALA PRO PRO GLU TYR HIS ARG LYS 0.431034 0.791667
103 ALA ARG THR LYS GLN THR ALA ARG LYS 0.430769 0.676923
104 SER SER GLY LYS VAL PRO LEU SER 0.42963 0.787879
105 GLN VAL PRO LEU ARG PRO MET THR TYR LYS 0.429412 0.773333
106 ARG GLN PHE GLY PRO ASP TRP ILE VAL ALA 0.429379 0.84058
107 ALA ARG LYS LEU ASP 0.42735 0.725806
108 ALA ASN SER ARG TRP PRO THR SER ALY ILE 0.426901 0.786667
109 PRO LYS ARG PRO THR THR LEU ASN LEU PHE 0.426829 0.814286
110 LYS ARG LYS ARG LYS ARG LYS ARG LYS ARG 0.424779 0.694915
111 GLN ILE LYS VAL ARG VAL ASP MET VAL 0.42446 0.69697
112 GLY ARG PRO ARG THR THR SER PHE ALA GLU 0.424051 0.838235
113 ARG VAL ALA SER PRO THR SER GLY VAL 0.422535 0.835821
114 ARG THR PRO SEP LEU PRO THR 0.422535 0.791667
115 PRO ALA ALA LYS ARG VAL LYS LEU ASP 0.422414 0.7
116 LYS PRO ILE VAL VAL LEU HIS GLY TYR 0.42236 0.746479
117 PRO PRO LYS LYS LYS ARG LYS VAL 0.421053 0.7
118 PRO VAL LYS ARG ARG LEU ASP LEU GLU 0.41958 0.83871
119 VAL PRO LEU ARG PRO MET THR TYR 0.419355 0.783784
120 GLU GLU PRO THR VAL ILE LYS LYS TYR 0.419355 0.732394
121 ILE SER PRO ARG THR LEU ASP ALA TRP 0.418605 0.808219
122 ARG PRO GLY ASN PHE LEU GLN SER ARG LEU 0.418182 0.826087
123 LYS ARG ARG LYS SEP VAL 0.418033 0.666667
124 VAL PRO PRO PRO ARG PRO PRO PRO PRO GLU 0.416667 0.887097
125 ILE PRO LEU THR GLU GLU ALA GLU LEU 0.416058 0.772727
126 ALA ARG THR LYS GLN THR ALA ARG 0.414634 0.661538
127 PHE PRO THR LYS ASP VAL ALA LEU 0.414474 0.764706
128 ILE LEU LYS GLU PRO VAL HIS GLY VAL 0.414013 0.815385
129 GLU PRO GLY GLY SER ARG 0.413534 0.830769
130 GLU LEU LYS ARG LYS MET ILE TYR MET 0.413333 0.652778
131 LYS ARG LYS 0.412844 0.711864
132 ARG GLU ARG SER PRO THR ARG 0.412698 0.859375
133 LYS LEU PRO ALA GLN PHE TYR ILE LEU 0.4125 0.742857
134 ARG PRO PRO GLY PHE THR PRO PHE ARG 0.410714 0.866667
135 ARG PRO PRO GLY PHE SER PRO PHE ARG 0.410714 0.866667
136 LYS GLY PRO PRO LEU PRO ARG PRO ARG VAL 0.410448 0.918033
137 GLY ARG PHE ALA ALA ALA ILE ALA LYS 0.410072 0.774194
138 PHE ASN ARG PRO VAL 0.410072 0.833333
139 LYS PRO ILE VAL GLN TYR ASP ASN PHE 0.409938 0.726027
140 ARG GLN PHE GLY PRO ASP PHE PRO THR ILE 0.409639 0.842857
141 ALA ASN SER ARG TRP PRO THR SER FAK ILE 0.409091 0.766234
142 SER SER ARG LYS GLU TYR TYR ALA 0.409091 0.652174
143 ARG ARG ALA ALA 0.409091 0.728814
144 PRO GLN ILE ILE ASN ARG PRO GLN ASN 0.408451 0.875
145 PRO PRO PRO VAL PRO PRO ARG ARG ARG ARG 0.407407 0.901639
146 ARG THR TYR SEP GLY PRO MET ASN LYS VAL 0.40678 0.698795
147 ARG PRO PRO GLY PHE SER PRO PHE ALA 0.406452 0.797101
148 1IP CYS PHE SER LYS PRO ARG 0.406452 0.8
149 ALA ASN SER ARG TRP PRO THR SER 2KK ILE 0.405556 0.75641
150 ACE ARG THR PRO SEP LEU PRO THR PIP 0.405405 0.75
151 ALA ILE ARG SER 0.405172 0.693548
152 SER ARG ASP HIS SER ARG THR PRO MET 0.404908 0.783784
153 GLU LYS PRO SER SER SER 0.404762 0.753846
154 SER SER TYR ARG ARG PRO VAL GLY ILE 0.403846 0.805556
155 ASN ARG LEU ILE LEU THR GLY 0.403226 0.65625
156 ALA THR ALY ALA ALA ARG ALY SER ALA PRO 0.402778 0.835821
157 ARG LEU TYR GLN ASN PRO THR THR TYR ILE 0.402439 0.783784
158 ALA ASN SER ARG TRP PRO THR THR ARG LEU 0.402439 0.783784
159 MET SER LEU PRO GLY ARG TRP LYS PRO LYS 0.402235 0.763158
160 GLU LEU PRO PRO VAL LYS ILE HIS CYS 0.401198 0.818182
161 SER THR GLY GLY VAL M3L LYS PRO HIS ARG 0.40113 0.74026
162 PHE ASN PHE PRO GLN ILE THR 0.4 0.728571
163 PHE PRO ARG 0.4 0.819672
164 GLN ALA SER TPO PRO ARG NIT 0.4 0.674699
Ligand no: 2; Ligand: SAH; Similar ligands found: 231
No: Ligand ECFP6 Tc MDL keys Tc
1 SAH 1 1
2 5X8 0.759494 0.969697
3 A7D 0.734177 0.926471
4 TT8 0.709302 0.970588
5 DSH 0.692308 0.914286
6 SXZ 0.692308 0.916667
7 DTA 0.666667 0.857143
8 3DH 0.662338 0.869565
9 S8M 0.655556 0.901408
10 SFG 0.635294 0.954545
11 SA8 0.62069 0.915493
12 EEM 0.617977 0.890411
13 MTA 0.615385 0.869565
14 SAI 0.613636 0.955882
15 S7M 0.586957 0.916667
16 36A 0.586538 0.90411
17 K15 0.583333 0.878378
18 RAB 0.573333 0.84058
19 XYA 0.573333 0.84058
20 ADN 0.573333 0.84058
21 62X 0.572917 0.855263
22 5CD 0.571429 0.852941
23 0UM 0.5625 0.876712
24 5N5 0.558442 0.84058
25 A4D 0.551282 0.867647
26 SAM 0.537634 0.916667
27 SSA 0.536842 0.712644
28 SMM 0.536842 0.88
29 KB1 0.534653 0.902778
30 A5D 0.532609 0.857143
31 SIB 0.53125 0.928571
32 EP4 0.530864 0.819444
33 DSZ 0.530612 0.732558
34 GSU 0.53 0.752941
35 A 0.529412 0.763158
36 LMS 0.529412 0.694118
37 AMP 0.529412 0.763158
38 5CA 0.525773 0.712644
39 ME8 0.524752 0.8125
40 M2T 0.52439 0.821918
41 6RE 0.523256 0.824324
42 GJV 0.522727 0.813333
43 OZP 0.518519 0.915493
44 AAT 0.515789 0.863014
45 LSS 0.515152 0.696629
46 KAA 0.514852 0.727273
47 J7C 0.511364 0.835616
48 KG4 0.51087 0.769231
49 A5A 0.510417 0.697674
50 SON 0.505495 0.805195
51 SRP 0.505155 0.805195
52 F0P 0.504505 0.915493
53 ADX 0.5 0.694118
54 5AL 0.5 0.779221
55 54H 0.5 0.681818
56 VMS 0.5 0.681818
57 KH3 0.5 0.866667
58 HY8 0.5 0.890411
59 AMO 0.5 0.805195
60 CA0 0.5 0.769231
61 N37 0.495495 0.9
62 HZ2 0.495413 0.890411
63 AHX 0.49505 0.753086
64 NVA LMS 0.49505 0.707865
65 TSB 0.494949 0.689655
66 53H 0.494949 0.674157
67 G5A 0.494737 0.712644
68 ABM 0.494382 0.74359
69 A2D 0.494382 0.74359
70 45A 0.494382 0.74359
71 ZAS 0.494253 0.808219
72 A6D 0.490196 0.759494
73 GEK 0.49 0.956522
74 8QN 0.49 0.779221
75 GAP 0.489583 0.769231
76 A3S 0.48913 0.884058
77 AN2 0.48913 0.734177
78 S4M 0.488889 0.831169
79 SRA 0.488636 0.746835
80 LAD 0.485437 0.810127
81 52H 0.484848 0.674157
82 AP2 0.483516 0.759494
83 A12 0.483516 0.759494
84 BA3 0.483516 0.74359
85 NEC 0.483146 0.788732
86 AOC 0.483146 0.842857
87 Y3J 0.481481 0.768116
88 VRT 0.479167 0.861111
89 50T 0.478723 0.734177
90 5AS 0.478261 0.655556
91 ADP 0.478261 0.74359
92 AP5 0.478261 0.74359
93 B4P 0.478261 0.74359
94 A3N 0.477778 0.830986
95 YSA 0.476636 0.712644
96 XAH 0.476636 0.768293
97 8LH 0.474747 0.759494
98 0XU 0.473684 0.897059
99 AT4 0.473118 0.7375
100 ADP MG 0.473118 0.763158
101 J4G 0.471154 0.818182
102 WAQ 0.471154 0.807692
103 NSS 0.470588 0.712644
104 8LE 0.469388 0.75
105 5AD 0.468354 0.791045
106 M33 0.468085 0.734177
107 AU1 0.468085 0.725
108 MAO 0.467391 0.797468
109 NB8 0.466667 0.775
110 A3G 0.466667 0.871429
111 TXA 0.466667 0.759494
112 N5O 0.466667 0.857143
113 3AM 0.465909 0.727273
114 8X1 0.465347 0.707865
115 8LQ 0.465347 0.782051
116 DAL AMP 0.465347 0.779221
117 ACP 0.463158 0.746835
118 ATP 0.463158 0.74359
119 A3T 0.463158 0.842857
120 HEJ 0.463158 0.74359
121 7D7 0.4625 0.785714
122 LEU LMS 0.461538 0.688889
123 9ZD 0.460784 0.740741
124 9ZA 0.460784 0.740741
125 APR 0.458333 0.766234
126 AQP 0.458333 0.74359
127 APC 0.458333 0.759494
128 AR6 0.458333 0.766234
129 PRX 0.458333 0.746835
130 5FA 0.458333 0.74359
131 F2R 0.457627 0.75
132 IOT 0.456897 0.761905
133 N5A 0.456522 0.855072
134 4AD 0.456311 0.794872
135 PAJ 0.456311 0.722892
136 WSA 0.45614 0.72093
137 HQG 0.455446 0.75641
138 FA5 0.453704 0.805195
139 8PZ 0.453704 0.712644
140 YAP 0.453704 0.794872
141 NVA 2AD 0.453608 0.849315
142 ATP MG 0.453608 0.763158
143 AD9 0.453608 0.725
144 SAP 0.453608 0.728395
145 AGS 0.453608 0.728395
146 ADP PO3 0.453608 0.763158
147 APC MG 0.453608 0.766234
148 ADV 0.453608 0.782051
149 RBY 0.453608 0.782051
150 PTJ 0.45283 0.731707
151 MHZ 0.452632 0.797468
152 00A 0.451923 0.740741
153 A3P 0.451613 0.74026
154 YLP 0.451327 0.771084
155 7MD 0.45045 0.768293
156 ALF ADP 0.45 0.707317
157 ADP ALF 0.45 0.707317
158 2VA 0.447917 0.819444
159 H1Q 0.447917 0.753247
160 OOB 0.446602 0.779221
161 ANP 0.444444 0.725
162 ACQ 0.444444 0.746835
163 TAT 0.444444 0.7375
164 T99 0.444444 0.7375
165 P5A 0.443396 0.719101
166 7D5 0.443182 0.708861
167 A1R 0.442308 0.7625
168 YLC 0.439655 0.790123
169 2AM 0.438202 0.717949
170 DLL 0.438095 0.779221
171 ARG AMP 0.4375 0.759036
172 A22 0.436893 0.734177
173 D3Y 0.436893 0.859155
174 ATF 0.435644 0.716049
175 MYR AMP 0.435185 0.746988
176 80F 0.434426 0.75
177 SO8 0.434343 0.808219
178 3UK 0.433962 0.769231
179 OAD 0.433962 0.769231
180 TAD 0.433628 0.765432
181 25A 0.432692 0.74359
182 ADP VO4 0.431373 0.734177
183 VO4 ADP 0.431373 0.734177
184 6YZ 0.431373 0.746835
185 9SN 0.431193 0.731707
186 TYM 0.431034 0.805195
187 PR8 0.429907 0.8
188 B5V 0.429907 0.759494
189 ADQ 0.428571 0.746835
190 YLB 0.42735 0.771084
191 FYA 0.425926 0.779221
192 9K8 0.425926 0.67033
193 1ZZ 0.425926 0.746988
194 3OD 0.425926 0.769231
195 PPS 0.425743 0.674419
196 B1U 0.423423 0.638298
197 MAP 0.423077 0.707317
198 4YB 0.421053 0.735632
199 A2P 0.421053 0.727273
200 ADP BMA 0.420561 0.746835
201 9X8 0.420561 0.75
202 TYR AMP 0.419643 0.794872
203 5SV 0.419048 0.731707
204 OZV 0.419048 0.74359
205 3NZ 0.416667 0.824324
206 YLA 0.416667 0.771084
207 8Q2 0.415254 0.688889
208 A3R 0.415094 0.7625
209 B5M 0.414414 0.75
210 B5Y 0.414414 0.75
211 LPA AMP 0.413793 0.768293
212 48N 0.413793 0.753086
213 AYB 0.413223 0.761905
214 ACK 0.413043 0.710526
215 QQY 0.413043 0.696203
216 BIS 0.412844 0.719512
217 JB6 0.412844 0.7625
218 PAP 0.41 0.730769
219 DQV 0.408696 0.75641
220 OVE 0.408602 0.7125
221 AMP DBH 0.40708 0.746835
222 4UV 0.40708 0.75
223 3AD 0.406977 0.852941
224 OMR 0.40678 0.738095
225 AF3 ADP 3PG 0.40678 0.743902
226 LAQ 0.405172 0.768293
227 A A 0.40367 0.74359
228 7C5 0.403509 0.789474
229 7MC 0.403361 0.75
230 KOY 0.401709 0.847222
231 4UU 0.4 0.75
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5E1M; Ligand: PRO PRO LYS ARG ILE ALA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5e1m.bio2) has 54 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5E1M; Ligand: SAH; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5e1m.bio2) has 54 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 5E1M; Ligand: SAH; Similar sites found with APoc: 3
This union binding pocket(no: 3) in the query (biounit: 5e1m.bio1) has 42 residues
No: Leader PDB Ligand Sequence Similarity
1 4KRG SAH 20.7469
2 5WP5 SAH 21.9917
3 5WP5 SAH 21.9917
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