Receptor
PDB id Resolution Class Description Source Keywords
5DX1 1.93 Å EC: 2.1.1.125 CRYSTAL STRUCTURE OF CARM1, SINEFUNGIN, AND PABP1 PEPTIDE (R HOMO SAPIENS PROTEIN-SUBSTRATE TERNARY COMPLEX TRANSFERASE
Ref.: STRUCTURAL INSIGHTS INTO TERNARY COMPLEX FORMATION CARM1 WITH VARIOUS SUBSTRATES. ACS CHEM.BIOL. V. 11 763 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:502;
B:502;
B:503;
C:502;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
SFG D:501;
A:501;
C:501;
B:501;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
381.387 C15 H23 N7 O5 c1nc(...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5DX1 1.93 Å EC: 2.1.1.125 CRYSTAL STRUCTURE OF CARM1, SINEFUNGIN, AND PABP1 PEPTIDE (R HOMO SAPIENS PROTEIN-SUBSTRATE TERNARY COMPLEX TRANSFERASE
Ref.: STRUCTURAL INSIGHTS INTO TERNARY COMPLEX FORMATION CARM1 WITH VARIOUS SUBSTRATES. ACS CHEM.BIOL. V. 11 763 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 9 families.
1 5DX1 - SFG C15 H23 N7 O5 c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 9 families.
1 5DX1 - SFG C15 H23 N7 O5 c1nc(c2c(n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 5DX1 - SFG C15 H23 N7 O5 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: SFG; Similar ligands found: 218
No: Ligand ECFP6 Tc MDL keys Tc
1 SFG 1 1
2 0UM 0.689655 0.887324
3 SAI 0.654762 0.940298
4 SA8 0.642857 0.9
5 SAH 0.635294 0.954545
6 EEM 0.62069 0.875
7 5X8 0.619048 0.924242
8 S7M 0.606742 0.875
9 RAB 0.597222 0.850746
10 XYA 0.597222 0.850746
11 ADN 0.597222 0.850746
12 5CD 0.594595 0.863636
13 5N5 0.581081 0.850746
14 62X 0.574468 0.84
15 A4D 0.573333 0.850746
16 K15 0.568421 0.863014
17 DTA 0.564103 0.84058
18 6RE 0.560976 0.833333
19 SAM 0.555556 0.875
20 EP4 0.551282 0.802817
21 KB1 0.55102 0.887324
22 M2T 0.544304 0.780822
23 SMM 0.537634 0.84
24 MTA 0.5375 0.826087
25 ZAS 0.53012 0.816901
26 A 0.53012 0.77027
27 AMP 0.53012 0.77027
28 J7C 0.529412 0.84507
29 3DH 0.52439 0.826087
30 GJV 0.523256 0.821918
31 SON 0.522727 0.813333
32 0XU 0.522222 0.938462
33 SRP 0.521277 0.813333
34 SSA 0.521277 0.697674
35 AMP MG 0.517647 0.75
36 AOC 0.517647 0.826087
37 CA0 0.516854 0.776316
38 5AL 0.516129 0.786667
39 AMO 0.515464 0.813333
40 DSZ 0.515464 0.717647
41 GSU 0.515152 0.738095
42 KH3 0.514286 0.851351
43 A2D 0.511628 0.75
44 A3N 0.511628 0.814286
45 ABM 0.511628 0.75
46 A5A 0.510638 0.682353
47 5CA 0.510417 0.697674
48 SRA 0.505882 0.730769
49 S4M 0.505747 0.792208
50 AN2 0.505618 0.74026
51 A7D 0.505618 0.882353
52 A3S 0.505618 0.895522
53 GAP 0.505376 0.776316
54 LSS 0.5 0.681818
55 VMS 0.5 0.666667
56 DSH 0.5 0.871429
57 AP2 0.5 0.766234
58 LAD 0.5 0.818182
59 ADX 0.5 0.678571
60 BA3 0.5 0.75
61 M33 0.5 0.74026
62 A12 0.5 0.766234
63 KAA 0.5 0.712644
64 54H 0.5 0.666667
65 Y3J 0.5 0.80303
66 SXZ 0.49505 0.875
67 ME8 0.49505 0.775
68 AHX 0.494949 0.759494
69 TSB 0.494845 0.674419
70 53H 0.494845 0.659091
71 G5A 0.494624 0.697674
72 50T 0.494505 0.74026
73 AP5 0.494382 0.75
74 5AS 0.494382 0.640449
75 ADP 0.494382 0.75
76 B4P 0.494382 0.75
77 8QN 0.489796 0.786667
78 GEK 0.489796 0.913043
79 5AD 0.486842 0.828125
80 PAJ 0.484848 0.728395
81 52H 0.484536 0.659091
82 AU1 0.483516 0.730769
83 ADP MG 0.483516 0.74026
84 MAO 0.483146 0.782051
85 NEC 0.482759 0.797101
86 A3G 0.482759 0.882353
87 3AM 0.482353 0.733333
88 YAP 0.480769 0.802632
89 7D7 0.480519 0.794118
90 TXA 0.480392 0.766234
91 NB8 0.480392 0.782051
92 NVA LMS 0.48 0.681818
93 DAL AMP 0.479592 0.786667
94 ATF 0.479167 0.721519
95 ATP 0.478261 0.75
96 BEF ADP 0.478261 0.721519
97 ACP 0.478261 0.753247
98 ADP BEF 0.478261 0.721519
99 A3T 0.478261 0.852941
100 7MD 0.476636 0.775
101 XAH 0.47619 0.775
102 YSA 0.47619 0.697674
103 PRX 0.473118 0.753247
104 APR 0.473118 0.773333
105 AR6 0.473118 0.773333
106 AQP 0.473118 0.75
107 APC 0.473118 0.766234
108 5FA 0.473118 0.75
109 WAQ 0.470588 0.815789
110 4AD 0.47 0.802632
111 NSS 0.47 0.697674
112 AD9 0.468085 0.730769
113 RBY 0.468085 0.789474
114 AGS 0.468085 0.7125
115 SAP 0.468085 0.7125
116 ADV 0.468085 0.789474
117 ADP PO3 0.468085 0.77027
118 A5D 0.468085 0.84058
119 MHZ 0.467391 0.782051
120 FA5 0.466667 0.813333
121 PTJ 0.466019 0.7375
122 00A 0.465347 0.746835
123 D3Y 0.464646 0.869565
124 ATP MG 0.463158 0.74026
125 VRT 0.463158 0.871429
126 LEU LMS 0.460784 0.662921
127 OOB 0.46 0.786667
128 S8M 0.46 0.859155
129 ADP VO4 0.459184 0.74026
130 VO4 ADP 0.459184 0.74026
131 ACQ 0.458333 0.753247
132 TAT 0.458333 0.721519
133 ANP 0.458333 0.730769
134 AAT 0.453608 0.847222
135 2AM 0.453488 0.723684
136 FYA 0.451923 0.786667
137 YLC 0.451327 0.797468
138 DLL 0.45098 0.786667
139 A3P 0.450549 0.746667
140 YLP 0.45045 0.777778
141 A22 0.45 0.74026
142 ADP ALF 0.44898 0.7125
143 ALF ADP 0.44898 0.7125
144 TYR AMP 0.448598 0.789474
145 2VA 0.446809 0.828571
146 3UK 0.446602 0.776316
147 OAD 0.446602 0.776316
148 ANP MG 0.444444 0.7125
149 IOT 0.443478 0.768293
150 9SN 0.443396 0.7375
151 P5A 0.442308 0.704545
152 PR8 0.442308 0.807692
153 7D5 0.44186 0.714286
154 A1R 0.441176 0.769231
155 7C5 0.440367 0.797297
156 TT8 0.44 0.926471
157 YLA 0.439655 0.777778
158 YLB 0.438596 0.777778
159 1ZZ 0.438095 0.753086
160 3OD 0.438095 0.776316
161 BIS 0.438095 0.725
162 NVA 2AD 0.4375 0.816901
163 MAP 0.435644 0.7125
164 MYR AMP 0.433962 0.753086
165 NAI 0.433628 0.725
166 SO8 0.43299 0.816901
167 A6D 0.432692 0.74359
168 5SV 0.431373 0.7375
169 25A 0.431373 0.75
170 TYM 0.429825 0.813333
171 WSA 0.429825 0.705882
172 3NZ 0.428571 0.833333
173 ARG AMP 0.428571 0.765432
174 LAQ 0.428571 0.753086
175 ADQ 0.427184 0.753247
176 7MC 0.426087 0.756098
177 48N 0.424779 0.759494
178 LPA AMP 0.424779 0.753086
179 JB6 0.424528 0.746835
180 PPS 0.424242 0.658824
181 AYB 0.423729 0.768293
182 PAP 0.42268 0.736842
183 OVE 0.422222 0.696203
184 3AD 0.421687 0.863636
185 4YB 0.419643 0.72093
186 CMP 0.419355 0.753425
187 2BA 0.419355 0.743243
188 A2P 0.419355 0.733333
189 ADP BMA 0.419048 0.753247
190 4UV 0.418182 0.75641
191 ALF ADP 3PG 0.417391 0.75
192 LA8 ALF 3PG 0.417391 0.75
193 AHZ 0.415929 0.731707
194 QQX 0.41573 0.670886
195 A A 0.415094 0.75
196 AP0 0.413793 0.695122
197 ATP A A A 0.412844 0.76
198 RP1 0.411111 0.705128
199 QQY 0.411111 0.679487
200 SP1 0.411111 0.705128
201 ACK 0.411111 0.716216
202 AFH 0.410714 0.728395
203 4UU 0.410714 0.75641
204 DND 0.408696 0.766234
205 TXD 0.408696 0.725
206 NXX 0.408696 0.766234
207 7D3 0.408602 0.696203
208 25L 0.407407 0.74026
209 CC5 0.407407 0.876923
210 TAD 0.40708 0.75
211 AMP DBH 0.405405 0.753247
212 TXE 0.405172 0.725
213 OMR 0.405172 0.743902
214 AF3 ADP 3PG 0.405172 0.75
215 MTP 0.404762 0.72973
216 N0B 0.401575 0.777778
217 V3L 0.4 0.773333
218 YLY 0.4 0.768293
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5DX1; Ligand: SFG; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5dx1.bio2) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5DX1; Ligand: SFG; Similar sites found: 307
This union binding pocket(no: 2) in the query (biounit: 5dx1.bio2) has 27 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4PIO AVI 0.0001005 0.4283 1.23839
2 4PIO SAH 0.00009436 0.42608 1.23839
3 4USI AKG 0.02709 0.40572 1.2987
4 4ONQ SFG 0.000007211 0.54281 1.43266
5 5A7Y SAH 0.01547 0.41225 1.60256
6 3LCC SAH 0.000005767 0.47294 1.70213
7 1FEC FAD 0.009596 0.40883 1.7192
8 3L9W GSH 0.001381 0.40506 1.7192
9 3L9W AMP 0.0008167 0.40454 1.7192
10 2EG5 SAH 0.00004077 0.52699 2.00573
11 4UCI SAM 0.0002014 0.4316 2.00573
12 3CGD FAD 0.0162 0.41629 2.00573
13 3CGD COA 0.0162 0.41629 2.00573
14 3CGD NAD 0.0162 0.41629 2.00573
15 4ETZ C2E 0.0128 0.41944 2.0202
16 3VYW SAM 0.0001328 0.47721 2.27273
17 2E5V FAD 0.009042 0.40733 2.29226
18 1X87 NAD 0.00511 0.40353 2.29226
19 3OID NDP 0.007359 0.40083 2.32558
20 1PZM 5GP 0.01993 0.41074 2.36967
21 3O7W SAM 0.00004598 0.52452 2.38095
22 3LCV SAM 0.0002189 0.45965 2.4911
23 1DL5 SAH 0.000004875 0.50913 2.52366
24 3VC1 SAH 0.0001322 0.40025 2.5641
25 3VC1 GST 0.0001322 0.40025 2.5641
26 2JHP SAH 0.01211 0.40284 2.5788
27 2CDU FAD 0.0088 0.40099 2.5788
28 2V57 PRL 0.02354 0.41197 2.63158
29 1N2X SAM 0.000143 0.46723 2.65781
30 1JQ3 AAT 0.0001799 0.41678 2.7027
31 3I53 SAH 0.0001273 0.44464 2.71084
32 2AOT SAH 0.0001619 0.4931 2.73973
33 1JQD SAH 0.001409 0.40193 2.73973
34 3WV8 ATP 0.005354 0.41202 2.75229
35 3GU3 SAH 0.00001122 0.56821 2.8169
36 2JJQ SAH 0.00003494 0.53016 2.86533
37 4J36 1HR 0.006935 0.41223 2.86533
38 4J36 FAD 0.004002 0.41166 2.86533
39 1CT9 GLN 0.02791 0.40321 2.86533
40 4C3Y FAD 0.01057 0.40263 2.86533
41 4C3Y ANB 0.01526 0.40018 2.86533
42 2XVE FAD 0.02408 0.40005 2.86533
43 1YXM ADE 0.001107 0.4796 2.9703
44 4NEC SAH 0.00003363 0.5247 3.0303
45 5ITV NAI 0.005514 0.40349 3.13725
46 1N4W FAD 0.00424 0.42129 3.15186
47 3DXY SAM 0.000006738 0.57138 3.21101
48 3FPF MTA 0.00005763 0.40999 3.3557
49 3FPF TNA 0.00005763 0.40999 3.3557
50 3LKZ SFG 0.00001823 0.51933 3.42679
51 5LOG SAH 0.000117 0.48423 3.43348
52 5KOK SAH 0.00005734 0.4977 3.4384
53 2ZWA SAH 0.000379 0.45377 3.4384
54 5KOK S9T 0.0003299 0.40587 3.4384
55 3CH6 NAP 0.01335 0.41206 3.4965
56 3CH6 311 0.01335 0.41206 3.4965
57 4OBW SAM 0.0001288 0.48727 3.50195
58 2I7C AAT 0.0001792 0.41429 3.53357
59 5N5D SAM 0.00006262 0.45017 3.53982
60 3FRH SAH 0.0003929 0.43495 3.55731
61 2VDV SAM 0.000004583 0.57193 3.65854
62 3OU2 SAH 0.000006487 0.51234 3.66972
63 2ZFU SAH 0.00004397 0.45849 3.72093
64 3VSE SAH 0.00005913 0.52568 3.72493
65 3SSO SAH 0.0005129 0.45685 3.72493
66 3KLJ FAD 0.00618 0.40393 3.72493
67 4M52 FAD 0.01085 0.40307 3.72493
68 5BUK FAD 0.01258 0.4021 3.72493
69 1NW5 SAM 0.00001932 0.46647 3.76176
70 1HGX 5GP 0.01972 0.41098 3.82514
71 1WG8 SAM 0.00003363 0.4793 3.85965
72 5KVA SAM 0.00002682 0.47372 3.95683
73 3P2E SAH 0.00008577 0.48531 4
74 4POO SAM 0.0001017 0.46085 4
75 3AYI HCI 0.007552 0.41808 4.01146
76 3AYI FAD 0.007254 0.41808 4.01146
77 3Q9T FAY 0.005021 0.41218 4.01146
78 2PT9 2MH 0.0001055 0.47762 4.04984
79 2PT9 S4M 0.00008031 0.46918 4.04984
80 3JWH SAH 0.000003645 0.45507 4.14747
81 2HQM FAD 0.003535 0.42368 4.17537
82 1V59 NAD 0.0003646 0.4874 4.1841
83 3C3Y SAH 0.0004316 0.4218 4.21941
84 5XVK SAH 0.0003059 0.45369 4.22535
85 5MGZ SAH 0.0000319 0.50877 4.23729
86 2PZM UDP 0.007547 0.41067 4.24242
87 2PZM NAD 0.007547 0.41067 4.24242
88 1LSS NAD 0.0002665 0.46433 4.28571
89 3C6K MTA 0.0001519 0.47389 4.29799
90 3C6K SPD 0.0001519 0.47389 4.29799
91 1QO8 FAD 0.0101 0.40438 4.29799
92 5M58 SAH 0.00007505 0.4466 4.34783
93 1R18 SAH 0.007293 0.41478 4.40529
94 3MA0 XYP 0.03912 0.40078 4.47284
95 1IY8 NAD 0.00458 0.40677 4.49438
96 5FJN FAD 0.002538 0.42976 4.58453
97 5FJN BE2 0.003053 0.42922 4.58453
98 5EB4 FAD 0.006524 0.41051 4.58453
99 5FUI APY 0.02935 0.40285 4.58453
100 4FZV SAM 0.0000277 0.50622 4.60251
101 4D42 NAP 0.012 0.40706 4.60993
102 4D42 W0I 0.012 0.40706 4.60993
103 1G60 SAM 0.0000689 0.44712 4.61538
104 4JCA CIT 0.01842 0.42551 4.79042
105 4II2 ATP 0.002872 0.42032 4.81928
106 2PX8 SAH 0.0001214 0.43105 4.83271
107 5BW4 SAM 0.0000102 0.46296 4.86891
108 4KRI SAH 0.000003665 0.54364 4.87106
109 1KYZ SAH 0.0004906 0.46604 4.87106
110 3TKY SAH 0.00009038 0.44506 4.87106
111 5DNK SAH 0.000008935 0.43598 4.87106
112 1JXN MFU 0.03061 0.40615 4.95868
113 5F8F SFG 0.00002951 0.52733 5.15759
114 3BGD SAH 0.0000298 0.49515 5.38462
115 3BGD PM6 0.00008229 0.45554 5.38462
116 1RJD SAM 0.0002284 0.43578 5.38922
117 3DMH SAM 0.0000009699 0.56824 5.44413
118 3DMH GMP 0.000003576 0.50597 5.44413
119 2YGM GLA NAG GAL FUC 0.01149 0.423 5.44413
120 1GY8 NAD 0.002086 0.42061 5.44413
121 5FTW SAH 0.001491 0.43247 5.46875
122 2UYQ SAM 0.001021 0.48332 5.48387
123 4BLW SAH 0.0002878 0.4419 5.53633
124 4BLW AMP 0.0003369 0.40723 5.53633
125 2P41 SAH 0.000006576 0.54458 5.57377
126 4IWN GEK 0.0000005684 0.56563 5.67686
127 5JCM NAD 0.02697 0.40026 5.73066
128 5JCM ISD 0.02697 0.40026 5.73066
129 5JCM FAD 0.02617 0.40026 5.73066
130 1I1N SAH 0.000006214 0.49794 5.75221
131 3A4T SFG 0.000006082 0.52874 5.83942
132 3A25 SAM 0.00006293 0.50107 5.98007
133 3FZG SAM 0.001178 0.45319 6
134 5MX4 HPA 0.03924 0.40033 6.00858
135 4OPC FDA 0.03964 0.40505 6.01719
136 4OPC PGT 0.04515 0.40505 6.01719
137 1I9G SAM 0.0129 0.42921 6.07143
138 1Q0S SAH 0.000115 0.45852 6.17761
139 3EVG SAH 0.0000061 0.54603 6.18182
140 1U2Z SAH 0.000001467 0.52516 6.30372
141 3QVP FAD 0.0004417 0.46289 6.30372
142 3WGT QSC 0.01495 0.40214 6.34006
143 3WGT FAD 0.01434 0.40214 6.34006
144 5E72 SAM 0.000006809 0.49514 6.35838
145 5E9W SAH 0.00006189 0.41977 6.41026
146 3QOX SAH 0.00000219 0.51904 6.59026
147 4KIB SAH 0.00000291 0.48566 6.59026
148 1ELI PYC 0.004169 0.41661 6.59026
149 1ZMD NAI 0.004185 0.40132 6.59026
150 3ZNN 4WL 0.01821 0.40348 6.62824
151 3ZNN FAD 0.01821 0.40348 6.62824
152 2WSB NAD 0.008271 0.40617 6.69291
153 1VBO MAN MAN MAN 0.02351 0.41541 6.71141
154 3HVJ 705 0.000006199 0.44491 6.78733
155 4TQG NDP 0.002011 0.41846 6.81115
156 4DMG SAM 0.000184 0.50179 6.87023
157 3GDN FAD 0.00445 0.41946 6.87679
158 3GDN HBX 0.00647 0.41946 6.87679
159 5MW4 5JU 0.000007939 0.42837 6.88623
160 1QAN SAH 0.000008759 0.52212 6.96721
161 3Q87 SAM 0.00007435 0.46115 7.05882
162 4J56 FAD 0.01268 0.40195 7.16332
163 3EVF SAH 0.0002077 0.40093 7.22022
164 4BV6 FAD 0.004993 0.41638 7.44986
165 2J5V RGP 0.02114 0.41453 7.44986
166 3GRU AMP 0.00005499 0.48424 7.45763
167 1XSE NDP 0.01134 0.4004 7.45763
168 5E1M SAH 0.00003394 0.43602 7.46888
169 5E1M PRO PRO LYS ARG ILE ALA 0.00003394 0.43602 7.46888
170 2EJU SAH 0.000006653 0.54436 7.73639
171 2WPF FAD 0.007635 0.43764 7.73639
172 2WPF WPF 0.01044 0.43266 7.73639
173 1FP1 SAH 0.003522 0.41858 7.73639
174 1EJ0 SAM 0.00003524 0.45468 7.77778
175 5THY SAH 0.00006222 0.49125 7.90123
176 4RDH AMP 0.003097 0.43374 7.98611
177 5X62 SAH 0.000003257 0.56471 8.02292
178 5GWX SAR 0.002721 0.40414 8.09859
179 5GWX SAM 0.002721 0.40414 8.09859
180 5THZ SAH 0.0000618 0.46511 8.14815
181 4D79 ATP 0.006547 0.41152 8.33333
182 1KYQ NAD 0.01004 0.40654 8.39416
183 3MQ2 SAH 0.0001177 0.49412 8.7156
184 1G55 SAH 0.000003042 0.55312 8.74636
185 1IM8 SAI 0.0000002474 0.59352 9.01639
186 2A14 SAH 0.000238 0.43958 9.12547
187 5MPT SAH 0.00005546 0.5035 9.16905
188 1D4D FAD 0.005367 0.41695 9.16905
189 2GVC FAD 0.006732 0.40241 9.16905
190 1VQW FAD 0.00698 0.40177 9.16905
191 5JE0 AZ8 0.000004597 0.48192 9.31174
192 5JE0 SAH 0.000004597 0.48192 9.31174
193 5JGL SAM 0.0002318 0.41741 9.34256
194 2F5Z FAD 0.006634 0.41305 9.375
195 3M6W SAM 0.00009231 0.5044 9.45559
196 1S7G APR 0.006837 0.40213 9.48617
197 4PNE SAH 0.00007128 0.4624 9.60265
198 5DM1 SAH 0.00002501 0.42229 9.73783
199 5DM1 5D7 0.00002951 0.41583 9.73783
200 5JJR SAH 0.000008274 0.54016 10.0287
201 3OFK SAH 0.0005706 0.44634 10.1852
202 3EGV SAH 0.00000299 0.56639 11.0236
203 2NXE SAM 0.00000729 0.5426 11.0236
204 2YX1 SFG 0.0000009199 0.4807 11.3095
205 1KPG SAH 0.00006668 0.4853 11.4983
206 3TLJ SAH 0.000008259 0.51799 12.0344
207 3GCM 5GP 0.01108 0.40216 12.1951
208 2PXX SAH 0.0000391 0.50492 12.5581
209 1XDS SAM 0.0002651 0.48849 12.6074
210 4N49 SAM 0.000217 0.46813 12.6074
211 2WA2 SAM 0.00001246 0.45778 12.6812
212 1JG3 ADN 0.0002092 0.47792 12.766
213 1GET FAD 0.006213 0.42939 12.894
214 1GET NAP 0.006624 0.42939 12.894
215 5CUQ NSC 0.00006394 0.48349 13.1086
216 1QZZ SAM 0.001289 0.45596 13.467
217 1NV8 SAM 0.000007074 0.4884 13.7324
218 1NV8 MEQ 0.0000349 0.4697 13.7324
219 4RPL 3UC 0.005656 0.43184 13.7536
220 4RPL FAD 0.005286 0.43122 13.7536
221 3DUW SAH 0.00003554 0.45894 13.9013
222 2XYQ SAH 0.0004017 0.41817 14.4828
223 4DCM SAM 0.00003004 0.44353 14.6132
224 4M73 SAH 0.000008009 0.52669 14.8368
225 4M73 M72 0.00003467 0.50183 14.8368
226 2HNK SAH 0.0001424 0.47592 15.0628
227 3A27 SAM 0.000006456 0.54494 15.0735
228 4KRG SAH 0.000003747 0.56195 15.1862
229 3H2B SAH 0.0000007406 0.57979 15.2709
230 3GDH SAH 0.00001106 0.50789 15.3527
231 1TPY SAH 0.00006561 0.48559 15.7895
232 1L1E SAH 0.000215 0.4683 15.7895
233 2FK8 SAM 0.0002872 0.46295 15.7895
234 5IL1 SAM 0.008762 0.40589 15.7895
235 5GM1 SAH 0.00006576 0.48106 15.8249
236 1XTP SAI 0.000003131 0.48871 16.1417
237 1Z3C SA8 0.00007122 0.47836 17.1141
238 3BXO SAM 0.000009035 0.45128 17.1548
239 2DPM SAM 0.00006924 0.48461 17.2535
240 2XVM SAH 0.00003377 0.53086 17.5879
241 3EGI ADP 0.0001241 0.53037 17.9612
242 4XUC 43G 0.000005842 0.52914 18.8073
243 4XUC SAM 0.000005842 0.52914 18.8073
244 4GUT FAD 0.008843 0.41035 19.3548
245 4HSU FAD 0.008245 0.40993 19.3548
246 2PWY SAH 0.001052 0.45267 19.3798
247 1XCL SAH 0.00002493 0.45115 19.5745
248 3X0D SAH 0.0000000004634 0.62791 19.7708
249 4X60 SFG 0.00000007843 0.48669 19.7708
250 4X60 3XV 0.00000008608 0.48002 19.7708
251 3NDJ SAH 0.0005586 0.46163 19.7708
252 3NDJ JHZ 0.0005586 0.46163 19.7708
253 3G2O SAM 0.00001598 0.52747 20.0669
254 2BOS GLA GAL GLC 0.02729 0.40771 20.5882
255 2BOS GLA GAL GLC NBU 0.03244 0.40295 20.5882
256 1WY7 SAH 0.000001082 0.56006 20.7729
257 5T67 JHZ 0.0005389 0.4613 20.9169
258 5T67 SAH 0.0004786 0.45811 20.9169
259 4R6W SAH 0.00002317 0.45111 20.9302
260 4QTU SAM 0.000007296 0.53661 21.0526
261 2BZG SAH 0.00000985 0.47152 21.0526
262 4YNU LGC 0.0004835 0.46626 21.0526
263 4YNU FAD 0.0003896 0.46626 21.0526
264 4MIG G3F 0.00156 0.44441 21.0526
265 1Y8Q ATP 0.0004542 0.44298 21.0526
266 3FUU ADN 0.0002375 0.42661 21.0526
267 5K7U SAM 0.005312 0.41556 21.0526
268 4TM3 FAD 0.02542 0.40312 21.0526
269 5FA8 SAM 0.0000006552 0.5631 21.118
270 4C4A SAH 0.0000000002141 0.63818 21.2034
271 3GCZ SAM 0.000009053 0.53842 21.2766
272 1VE3 SAM 0.00001493 0.52878 21.5859
273 1P1C SAH 0.0001701 0.44671 23.1156
274 5E8J SAH 0.00004731 0.52393 25
275 4YMH SAH 0.00001191 0.52184 25
276 1LOB MMA 0.03113 0.40076 25
277 1L3I SAH 0.0000151 0.49784 26.0417
278 3G89 SAM 0.000001021 0.6028 26.3158
279 3PT9 SAH 0.000005959 0.54648 26.3158
280 1KPH SAH 0.00006711 0.48518 26.3158
281 3GWZ SAH 0.0005838 0.47226 26.3158
282 3GXO SAH 0.00103 0.45589 26.3158
283 1E6E FAD 0.003 0.42035 26.3158
284 4HZ0 1AV 0.02229 0.41776 26.3158
285 3K6V CIT 0.04027 0.40272 26.3158
286 2ZIF SAM 0.000002848 0.55436 31.5789
287 4AZT SAM 0.0001427 0.48529 31.5789
288 1ZQ9 SAM 0.0007032 0.45456 31.5789
289 5XVQ SAH 0.000304 0.45381 31.5789
290 4AZW SAM 0.0001474 0.43572 31.5789
291 5L95 AMP 0.002576 0.42585 31.5789
292 2Z3Y F2N 0.003444 0.42512 31.5789
293 2O07 MTA 0.0006102 0.42282 31.5789
294 2O07 SPD 0.0007277 0.40971 31.5789
295 4M38 SAH 0.000000001432 0.68883 35.5685
296 5HJM MTA 0.000001295 0.56924 36.8421
297 3T7S SAM 0.000006858 0.54377 36.8421
298 5ULP KB1 0.000005979 0.51865 36.8421
299 3S1S SAH 0.00001793 0.50419 36.8421
300 1SQF SAM 0.00008584 0.49509 36.8421
301 4JGT PYR 0.008609 0.43872 36.8421
302 3UCL CYH 0.009377 0.42079 36.8421
303 3UCL NAP 0.0103 0.42079 36.8421
304 3UCL FAD 0.009377 0.42079 36.8421
305 4LWP SAH 0.000000000001234 0.84298 45.8453
306 4Y2H SAH 0.0000000000002893 0.84195 48.1375
307 4Y2H 49K 0.000000000002482 0.80297 48.1375
Pocket No.: 3; Query (leader) PDB : 5DX1; Ligand: SFG; Similar sites found: 17
This union binding pocket(no: 3) in the query (biounit: 5dx1.bio1) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3JUT GTQ 0.03807 0.40719 None
2 2VVM FAD 0.008195 0.40896 1.7192
3 3ICS FAD 0.009999 0.4033 2.86533
4 3L24 GOA 0.03808 0.40152 2.86533
5 5VQ4 HCA 0.03525 0.40207 3.4384
6 4Z2S NAG 0.03419 0.40241 3.52113
7 4Z2S NDG 0.03419 0.40241 3.52113
8 5F2K SAH 0.00583 0.40648 3.72493
9 5F2K OCA 0.00583 0.40648 3.72493
10 1UKG MMA 0.03376 0.40507 5.55556
11 4KXQ APR 0.006163 0.40159 6.04982
12 5KXE 6Y2 0.03354 0.40287 6.17284
13 2FJK 13P 0.01441 0.41236 6.22951
14 4FC7 COA 0.01432 0.40039 19.4946
15 4FC7 NAP 0.01432 0.40039 19.4946
16 3FU7 3DM 0.02532 0.40801 26.3158
17 2V3B FAD 0.009012 0.40419 36.8421
Pocket No.: 4; Query (leader) PDB : 5DX1; Ligand: SFG; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5dx1.bio1) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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