Receptor
PDB id Resolution Class Description Source Keywords
5DSC 2.4 Å NON-ENZYME: OTHER CONTEXT-INDEPENDENT ANTI-HYPUSINE ANTIBODY FABHPU24.B IN COM HYPUSINE ORYCTOLAGUS CUNICULUS HYPUSINE ANTIBODY FABHPU24.B EIF5A IMMUNE SYSTEM
Ref.: STRUCTURAL ANALYSIS AND OPTIMIZATION OF CONTEXT-IND ANTI-HYPUSINE ANTIBODIES. J.MOL.BIOL. V. 428 603 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GLY 5CT GLY SER GLY P:3;
Q:3;
M:3;
N:3;
Valid;
Valid;
Valid;
Valid;
Atoms found LESS than expected: % Diff = 0.029;
Atoms found LESS than expected: % Diff = 0.029;
Atoms found LESS than expected: % Diff = 0.029;
Atoms found LESS than expected: % Diff = 0.029;
submit data
478.571 n/a O=C(N...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5DSC 2.4 Å NON-ENZYME: OTHER CONTEXT-INDEPENDENT ANTI-HYPUSINE ANTIBODY FABHPU24.B IN COM HYPUSINE ORYCTOLAGUS CUNICULUS HYPUSINE ANTIBODY FABHPU24.B EIF5A IMMUNE SYSTEM
Ref.: STRUCTURAL ANALYSIS AND OPTIMIZATION OF CONTEXT-IND ANTI-HYPUSINE ANTIBODIES. J.MOL.BIOL. V. 428 603 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 5DSC - GLY 5CT GLY SER GLY n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 5DSC - GLY 5CT GLY SER GLY n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 5DSC - GLY 5CT GLY SER GLY n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GLY 5CT GLY SER GLY; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 GLY 5CT GLY SER GLY 1 1
2 GLY 5CT GLY ALA 0.7125 0.886364
3 GLY 5GG GLY ALA 0.517647 0.777778
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5DSC; Ligand: GLY 5CT GLY SER GLY; Similar sites found: 30
This union binding pocket(no: 1) in the query (biounit: 5dsc.bio4) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4HZX G39 0.02593 0.41937 3.72093
2 4TMK T5A 0.04286 0.44071 3.75587
3 1OFH ADP 0.03055 0.42872 4.01786
4 4Q3R XA2 0.01672 0.41388 4.18605
5 1W55 GPP 0.01437 0.40144 4.65116
6 3EM1 TYD 0.01222 0.41806 4.79452
7 1OMZ UD2 0.01779 0.43105 4.91071
8 4KCF AKM 0.008168 0.45293 5.28634
9 4OYA 1VE 0.01836 0.45732 5.35714
10 1WVC CTP 0.01487 0.45679 5.35714
11 3OIG NAD 0.03098 0.42904 6.04651
12 1ZFJ IMP 0.02101 0.45332 6.25
13 3Q3C NAD 0.01034 0.44931 6.25
14 2PAR TMP 0.01811 0.43022 6.46766
15 4G1V FAD 0.004649 0.48802 6.51163
16 5LOG LDP 0.03183 0.41318 6.51163
17 3O03 NAP 0.006468 0.46259 6.69643
18 1E7S NAP 0.03103 0.40851 7.14286
19 1XMV ADP 0.04433 0.4164 7.90698
20 3VHZ SOG 0.04965 0.41957 8.83721
21 1O6B ADP 0.02282 0.42648 8.87574
22 1X54 4AD 0.02974 0.40072 8.92857
23 4GQB 0XU 0.007281 0.45701 9.375
24 1F8F NAD 0.01383 0.44435 10.6977
25 3VKX T3 0.005521 0.42899 11.6071
26 2GJ3 FAD 0.01198 0.45868 11.6667
27 1Q3Q ANP 0.04887 0.41751 12.5
28 4UBP HAE 0.02343 0.40022 12.8713
29 1NPL MAN 0.0212 0.40463 16.5138
30 1F7L COA 0.04944 0.40022 19.8347
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