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Receptor
PDB id Resolution Class Description Source Keywords
5DNK 1.9 Å EC: 2.-.-.- THE STRUCTURE OF PKMT1 FROM RICKETTSIA PROWAZEKII IN COMPLEX ADOHCY RICKETTSIA PROWAZEKII (STRAIN MADRID EORGANISM_TAXID: 272947 METHYLTRANSFERASE ROSSMAN FOLD SAM BINDING PROTEIN METHYLTRANSFERASE
Ref.: STRUCTURAL INSIGHTS INTO SUBSTRATE RECOGNITION AND IN OUTER MEMBRANE PROTEIN B (OMPB) BY PROTEIN-LYSIN METHYLTRANSFERASES FROM RICKETTSIA. J.BIOL.CHEM. V. 291 19962 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SAH A:601;
B:601;
Valid;
Valid;
none;
none;
submit data
384.411 C14 H20 N6 O5 S c1nc(...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5DNK 1.9 Å EC: 2.-.-.- THE STRUCTURE OF PKMT1 FROM RICKETTSIA PROWAZEKII IN COMPLEX ADOHCY RICKETTSIA PROWAZEKII (STRAIN MADRID EORGANISM_TAXID: 272947 METHYLTRANSFERASE ROSSMAN FOLD SAM BINDING PROTEIN METHYLTRANSFERASE
Ref.: STRUCTURAL INSIGHTS INTO SUBSTRATE RECOGNITION AND IN OUTER MEMBRANE PROTEIN B (OMPB) BY PROTEIN-LYSIN METHYLTRANSFERASES FROM RICKETTSIA. J.BIOL.CHEM. V. 291 19962 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 269 families.
1 5DNK - SAH C14 H20 N6 O5 S c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 237 families.
1 5DNK - SAH C14 H20 N6 O5 S c1nc(c2c(n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 187 families.
1 5DNK - SAH C14 H20 N6 O5 S c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: SAH; Similar ligands found: 211
No: Ligand ECFP6 Tc MDL keys Tc
1 SAH 1 1
2 5X8 0.759494 0.969697
3 A7D 0.734177 0.926471
4 TT8 0.709302 0.970588
5 DSH 0.692308 0.914286
6 SXZ 0.692308 0.916667
7 DTA 0.666667 0.857143
8 3DH 0.662338 0.869565
9 S8M 0.655556 0.901408
10 SFG 0.635294 0.954545
11 SA8 0.62069 0.915493
12 EEM 0.617977 0.890411
13 MTA 0.615385 0.869565
14 SAI 0.613636 0.955882
15 S7M 0.586957 0.916667
16 36A 0.586538 0.90411
17 K15 0.583333 0.878378
18 ADN 0.573333 0.84058
19 RAB 0.573333 0.84058
20 XYA 0.573333 0.84058
21 62X 0.572917 0.855263
22 5CD 0.571429 0.852941
23 0UM 0.5625 0.876712
24 5N5 0.558442 0.84058
25 A4D 0.551282 0.867647
26 SAM 0.537634 0.916667
27 SMM 0.536842 0.88
28 SSA 0.536842 0.712644
29 KB1 0.534653 0.902778
30 A5D 0.532609 0.857143
31 SIB 0.53125 0.928571
32 EP4 0.530864 0.819444
33 DSZ 0.530612 0.732558
34 GSU 0.53 0.752941
35 A 0.529412 0.763158
36 LMS 0.529412 0.694118
37 AMP 0.529412 0.763158
38 5CA 0.525773 0.712644
39 ME8 0.524752 0.8125
40 M2T 0.52439 0.821918
41 6RE 0.523256 0.824324
42 GJV 0.522727 0.813333
43 AAT 0.515789 0.863014
44 LSS 0.515152 0.696629
45 KAA 0.514852 0.727273
46 J7C 0.511364 0.835616
47 A5A 0.510417 0.697674
48 SON 0.505495 0.805195
49 SRP 0.505155 0.805195
50 F0P 0.504505 0.915493
51 54H 0.5 0.681818
52 VMS 0.5 0.681818
53 ADX 0.5 0.694118
54 CA0 0.5 0.769231
55 AMO 0.5 0.805195
56 5AL 0.5 0.779221
57 KH3 0.5 0.866667
58 NVA LMS 0.49505 0.707865
59 AHX 0.49505 0.753086
60 TSB 0.494949 0.689655
61 53H 0.494949 0.674157
62 G5A 0.494737 0.712644
63 ABM 0.494382 0.74359
64 A2D 0.494382 0.74359
65 ZAS 0.494253 0.808219
66 A6D 0.490196 0.759494
67 8QN 0.49 0.779221
68 GEK 0.49 0.956522
69 GAP 0.489583 0.769231
70 AN2 0.48913 0.734177
71 A3S 0.48913 0.884058
72 S4M 0.488889 0.831169
73 SRA 0.488636 0.746835
74 LAD 0.485437 0.810127
75 52H 0.484848 0.674157
76 A12 0.483516 0.759494
77 BA3 0.483516 0.74359
78 AP2 0.483516 0.759494
79 NEC 0.483146 0.788732
80 AOC 0.483146 0.842857
81 Y3J 0.481481 0.768116
82 VRT 0.479167 0.861111
83 50T 0.478723 0.734177
84 B4P 0.478261 0.74359
85 ADP 0.478261 0.74359
86 5AS 0.478261 0.655556
87 AP5 0.478261 0.74359
88 A3N 0.477778 0.830986
89 YSA 0.476636 0.712644
90 XAH 0.476636 0.768293
91 0XU 0.473684 0.897059
92 AT4 0.473118 0.7375
93 WAQ 0.471154 0.807692
94 NSS 0.470588 0.712644
95 5AD 0.468354 0.791045
96 AU1 0.468085 0.725
97 M33 0.468085 0.734177
98 MAO 0.467391 0.797468
99 TXA 0.466667 0.759494
100 NB8 0.466667 0.775
101 A3G 0.466667 0.871429
102 3AM 0.465909 0.727273
103 DAL AMP 0.465347 0.779221
104 8X1 0.465347 0.707865
105 A3T 0.463158 0.842857
106 ATP 0.463158 0.74359
107 HEJ 0.463158 0.74359
108 ACP 0.463158 0.746835
109 7D7 0.4625 0.785714
110 LEU LMS 0.461538 0.688889
111 9ZA 0.460784 0.740741
112 9ZD 0.460784 0.740741
113 5FA 0.458333 0.74359
114 AQP 0.458333 0.74359
115 AR6 0.458333 0.766234
116 APC 0.458333 0.759494
117 APR 0.458333 0.766234
118 PRX 0.458333 0.746835
119 F2R 0.457627 0.75
120 IOT 0.456897 0.761905
121 4AD 0.456311 0.794872
122 PAJ 0.456311 0.722892
123 WSA 0.45614 0.72093
124 YAP 0.453704 0.794872
125 8PZ 0.453704 0.712644
126 FA5 0.453704 0.805195
127 ADP PO3 0.453608 0.763158
128 ADV 0.453608 0.782051
129 NVA 2AD 0.453608 0.849315
130 SAP 0.453608 0.728395
131 AGS 0.453608 0.728395
132 RBY 0.453608 0.782051
133 AD9 0.453608 0.725
134 PTJ 0.45283 0.731707
135 MHZ 0.452632 0.797468
136 00A 0.451923 0.740741
137 A3P 0.451613 0.74026
138 YLP 0.451327 0.771084
139 7MD 0.45045 0.768293
140 ALF ADP 0.45 0.707317
141 ADP ALF 0.45 0.707317
142 2VA 0.447917 0.819444
143 OOB 0.446602 0.779221
144 ANP 0.444444 0.725
145 T99 0.444444 0.7375
146 ACQ 0.444444 0.746835
147 TAT 0.444444 0.7375
148 P5A 0.443396 0.719101
149 7D5 0.443182 0.708861
150 A1R 0.442308 0.7625
151 YLC 0.439655 0.790123
152 2AM 0.438202 0.717949
153 DLL 0.438095 0.779221
154 ARG AMP 0.4375 0.759036
155 A22 0.436893 0.734177
156 D3Y 0.436893 0.859155
157 ATF 0.435644 0.716049
158 MYR AMP 0.435185 0.746988
159 80F 0.434426 0.75
160 SO8 0.434343 0.808219
161 OAD 0.433962 0.769231
162 3UK 0.433962 0.769231
163 TAD 0.433628 0.765432
164 25A 0.432692 0.74359
165 6YZ 0.431373 0.746835
166 VO4 ADP 0.431373 0.734177
167 ADP VO4 0.431373 0.734177
168 9SN 0.431193 0.731707
169 TYM 0.431034 0.805195
170 B5V 0.429907 0.759494
171 PR8 0.429907 0.8
172 ADQ 0.428571 0.746835
173 YLB 0.42735 0.771084
174 9K8 0.425926 0.67033
175 1ZZ 0.425926 0.746988
176 FYA 0.425926 0.779221
177 3OD 0.425926 0.769231
178 PPS 0.425743 0.674419
179 MAP 0.423077 0.707317
180 A2P 0.421053 0.727273
181 4YB 0.421053 0.735632
182 9X8 0.420561 0.75
183 ADP BMA 0.420561 0.746835
184 TYR AMP 0.419643 0.794872
185 5SV 0.419048 0.731707
186 3NZ 0.416667 0.824324
187 YLA 0.416667 0.771084
188 8Q2 0.415254 0.688889
189 A3R 0.415094 0.7625
190 B5Y 0.414414 0.75
191 B5M 0.414414 0.75
192 48N 0.413793 0.753086
193 LPA AMP 0.413793 0.768293
194 AYB 0.413223 0.761905
195 ACK 0.413043 0.710526
196 QQY 0.413043 0.696203
197 BIS 0.412844 0.719512
198 JB6 0.412844 0.7625
199 PAP 0.41 0.730769
200 DQV 0.408696 0.75641
201 OVE 0.408602 0.7125
202 AMP DBH 0.40708 0.746835
203 4UV 0.40708 0.75
204 3AD 0.406977 0.852941
205 AF3 ADP 3PG 0.40678 0.743902
206 OMR 0.40678 0.738095
207 LAQ 0.405172 0.768293
208 A A 0.40367 0.74359
209 7C5 0.403509 0.789474
210 7MC 0.403361 0.75
211 4UU 0.4 0.75
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5DNK; Ligand: SAH; Similar sites found with APoc: 952
This union binding pocket(no: 1) in the query (biounit: 5dnk.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 4TXI FAD 0.722022
2 2BRY FAD 0.804829
3 1D4D FAD 0.902527
4 1VKO NAD 0.931099
5 3NKS FAD 1.04822
6 1U8X NAD 1.05932
7 3V1U NAD 1.08225
8 2JHP SAH 1.08303
9 4NTC FAD 1.19403
10 2YVF NAD 1.22549
11 2YVF FAD 1.22549
12 1LVL FAD 1.31004
13 1LVL NAD 1.31004
14 3TKY SAH 1.3587
15 1GR0 NAD 1.3624
16 3O03 NAP 1.37457
17 1U2Z SAH 1.38568
18 3NTA FAD 1.39373
19 3NT6 FAD 1.39373
20 3NTD FAD 1.41593
21 3X0D SAH 1.44404
22 5WGR FAD 1.44404
23 1RSG FAD 1.44404
24 2Q28 ADP 1.44404
25 1Z45 NAD 1.44404
26 3QJ4 FAD 1.46199
27 2E5V FAD 1.48305
28 4ZCC NAI 1.4881
29 4ZCC FAD 1.4881
30 4K5S PM0 1.49254
31 4K5S FAD 1.49254
32 6F3M NAD 1.52174
33 5MIT NAP 1.52905
34 5MIT FAD 1.52905
35 6D6Y SAH 1.52964
36 1PJS NAD 1.53173
37 5X68 FAD 1.53453
38 2C7G FAD 1.53509
39 2C7G ODP 1.53509
40 1OMO NAD 1.5528
41 1YY5 FAD 1.55945
42 1L7E NAI 1.5625
43 4AT0 FAD 1.56863
44 1COY FAD 1.57791
45 1COY AND 1.57791
46 6F7L FAD 1.58371
47 2UYQ SAM 1.6129
48 4REP FAD 1.61616
49 3K7M FAD 1.62413
50 5HSA FAS 1.62455
51 3ICT FAD 1.62455
52 3ICS FAD 1.62455
53 3ICR FAD 1.62455
54 5Y77 FAD 1.62455
55 4D5G TPP 1.62455
56 4D5G FAD 1.62455
57 5YB7 ORN 1.62455
58 5YB7 FAD 1.62455
59 3ICT ADP 1.62455
60 2E7Z MGD 1.62455
61 3ICS ADP 1.62455
62 3ABI NAD 1.64384
63 5JE8 NAD 1.65563
64 5UAO FAD 1.66359
65 5O9F 9ON 1.70455
66 5O9F NAD 1.70455
67 5I39 FAD 1.71569
68 5M90 JIF 1.72414
69 5JWC FAD 1.72745
70 4RPL 3UC 1.75439
71 4RPL FAD 1.75439
72 3OZ2 FAD 1.76322
73 1K27 MTM 1.76678
74 2CDU FAD 1.76991
75 2CDU ADP 1.76991
76 4GKV NAD 1.78571
77 3GF4 FAD 1.79487
78 3GF4 UPG 1.79487
79 2QA1 FAD 1.8
80 5JJR SAH 1.80505
81 2ZWA SAH 1.80505
82 1TMO 2MD 1.80505
83 2WA2 SAM 1.81159
84 6BQ6 TER 1.81269
85 3GE7 AFQ 1.81347
86 4EDF UPG 1.82186
87 4RF2 NAP 1.83824
88 1OBB NAD 1.875
89 5F7J ADE 1.875
90 1NW5 SAM 1.88088
91 1V59 NAD 1.88285
92 2IVD FAD 1.88285
93 1V59 FAD 1.88285
94 2B9W FAD 1.88679
95 2IZ1 ATR 1.89873
96 1LDN NAD 1.89873
97 2EV9 SKM 1.90114
98 2EV9 NAP 1.90114
99 1FL2 FAD 1.93548
100 3VPH NAD 1.93548
101 3VPH OXM 1.93548
102 5MZI FYK 1.95228
103 5MZI FAD 1.95228
104 3E1T FAD 1.95312
105 1E1M FAD 1.95652
106 1E1M NAP 1.95652
107 4FN4 NAD 1.9685
108 3PT9 SAH 1.98556
109 4MIG G3F 1.98556
110 2GMH FAD 1.98556
111 4QAR ADE 1.99005
112 1ZK4 NAP 1.99203
113 3AXB PRO 2.00893
114 3AXB FAD 2.00893
115 1EK6 UPG 2.01149
116 1EK6 NAI 2.01149
117 3UOY FAD 2.01835
118 3UOY NAP 2.01835
119 2ZIF SAM 2.0202
120 2BD0 NAP 2.04918
121 3WLE NAD 2.05279
122 5A04 BGC 2.0649
123 5A04 NDP 2.0649
124 6F97 FAD 2.07156
125 6FDF SAH 2.09581
126 5OJ7 AR6 2.0979
127 3NYC IAR 2.09974
128 3NYC FAD 2.09974
129 2C5A NAD 2.11082
130 2C5A GDC 2.11082
131 1E3I CXF 2.12766
132 4YNU FAD 2.16606
133 4YNU LGC 2.16606
134 4IV9 FAD 2.16606
135 4PIO SAH 2.16718
136 4PIO AVI 2.16718
137 2YG3 FAD 2.20751
138 5JCM FAD 2.21729
139 5JCM ISD 2.21729
140 5JCM NAD 2.21729
141 5J5Z FAD 2.21774
142 4ITU 1HS 2.23048
143 4ITU NAI 2.23048
144 5W7M SAH 2.24359
145 2Y6Q I7T 2.26131
146 2Y6Q FAD 2.26131
147 1H5Q NAP 2.26415
148 1GY8 NAD 2.267
149 1H9A NAP 2.26804
150 1DIG L37 2.28758
151 1DIG NAP 2.28758
152 3T31 FAD 2.28833
153 3T31 DCQ 2.28833
154 1ELI PYC 2.31362
155 1P3D UMA 2.31579
156 1P31 EPU 2.31579
157 1OAA OAA 2.3166
158 1H82 FAD 2.33051
159 1H82 GZZ 2.33051
160 4M37 SAH 2.33236
161 4M38 SAH 2.33236
162 1G55 SAH 2.33236
163 4FWE FAD 2.34657
164 1UWK NAD 2.34657
165 1UWK URO 2.34657
166 6AIN FAD 2.34657
167 2ZXI FAD 2.34657
168 2C31 TZD 2.34657
169 2C31 ADP 2.34657
170 3S1S SAH 2.34657
171 1EU1 MGD 2.34657
172 2WET FAD 2.34834
173 2Z3U CRR 2.35294
174 5HXI FAD 2.37467
175 5HXI 5HN 2.37467
176 3ORF NAD 2.39044
177 3H8V ATP 2.39726
178 2FZW NAD 2.41287
179 5MBX FAD 2.41449
180 5MBX SP5 2.41449
181 1DJL NAP 2.41546
182 2OBF SAH 2.42215
183 2OBF F83 2.42215
184 2CVZ NDP 2.42215
185 1WP4 NDP 2.42215
186 2JAJ D20 2.42215
187 3GWZ SAH 2.43902
188 4EMI NAD 2.43902
189 4EMI FAD 2.43902
190 2AG5 NAD 2.43902
191 3GXO SAH 2.43902
192 1SOW NAD 2.43902
193 2B3D FAD 2.45098
194 4TM3 FAD 2.48307
195 2RGJ FAD 2.48756
196 3GDN FAD 2.4952
197 3GDN HBX 2.4952
198 1MUU NAD 2.52294
199 1MV8 NAD 2.52294
200 1GTE FAD 2.52708
201 1Q9I TEO 2.52708
202 1Q9I FAD 2.52708
203 5BRT CH9 2.52708
204 5BRT FAD 2.52708
205 6FCX FAD 2.52708
206 4K26 SFF 2.53623
207 4K26 NDP 2.53623
208 4EIP FAD 2.55009
209 1XCL SAH 2.55319
210 5KKA 6V0 2.5641
211 3GFB NAD 2.57143
212 1OVD ORO 2.57235
213 1OVD FMN 2.57235
214 2XVE FAD 2.58621
215 2XVF FAD 2.58621
216 4BJZ FAD 2.59434
217 4BJZ P3A 2.59434
218 2R4J 13P 2.59481
219 2R4J FAD 2.59481
220 2GN4 NDP 2.61628
221 2GN4 UD1 2.61628
222 3IHG FAD 2.61682
223 5XWV NDP 2.62097
224 5XWV 8H6 2.62097
225 5FJN BE2 2.63158
226 5FJN FAD 2.63158
227 5A3B APR 2.64026
228 3LXD FAD 2.6506
229 2VHW NAI 2.65252
230 5TTJ FAD 2.65306
231 2JB2 FAD 2.65849
232 2JB2 PHE 2.65849
233 3BGD SAH 2.69231
234 3BGD PM6 2.69231
235 1Q0S SAH 2.7027
236 2IV2 MGD 2.70758
237 2IV2 2MD 2.70758
238 3LZW FAD 2.71084
239 3LZW NAP 2.71084
240 1D4O NAP 2.71739
241 1PZG A3D 2.71903
242 1I8T FAD 2.7248
243 4XQC NAD 2.73684
244 4XQC 13D 2.73684
245 3LU1 NAD 2.74725
246 2V6G NAP 2.74725
247 2YVJ FAD 2.75229
248 2YVJ NAI 2.75229
249 3X0V FAD 2.77264
250 1WVG APR 2.78552
251 4I5I NAD 2.78746
252 3WMX NAD 2.7933
253 1T26 NAI 2.79503
254 1T26 GBD 2.79503
255 1PL6 NAD 2.80899
256 1PL6 572 2.80899
257 3G89 SAM 2.81124
258 4CNK FAD 2.8133
259 1RP0 AHZ 2.8169
260 1GZ6 NAI 2.82132
261 1LTH NAD 2.82132
262 3EWP APR 2.82486
263 2FK8 SAM 2.83019
264 3GCZ SAM 2.83688
265 2DT5 NAD 2.8436
266 4KXQ APR 2.84698
267 3UBM COA 2.85088
268 4X9M FAD 2.87081
269 2FR1 NDP 2.88066
270 1ORR NAD 2.88184
271 1YBH FAD 2.88809
272 1GET NAP 2.88889
273 1GET FAD 2.88889
274 1Y8Q ATP 2.89017
275 1VJT NAD 2.89855
276 4O0L NDP 2.90909
277 2EJU SAH 2.91005
278 2P41 SAH 2.95082
279 3FSM 2NC 2.95567
280 4YUW 4JU 2.96053
281 4YUW S4M 2.96053
282 3QWI CUE 2.96296
283 3QWI NAP 2.96296
284 2PX8 SAH 2.97398
285 2YX1 SFG 2.97619
286 1W8D NAP 2.98013
287 1W73 NAP 2.98013
288 1IY8 NAD 2.99625
289 3ELW GP3 3
290 3ELW SAM 3
291 3Q3C NAD 3.01003
292 2PV7 NAD 3.02013
293 3S5W FAD 3.02376
294 5LW0 AR6 3.0303
295 2ZJ1 NAD 3.0303
296 2ZJ1 ARJ 3.0303
297 4N49 SAM 3.03738
298 5YF1 SFG 3.03867
299 5YF1 8V0 3.03867
300 2A14 SAH 3.04183
301 5Y1G NAD 3.04878
302 5Y1G AKB 3.04878
303 2HJR APR 3.04878
304 3QOX SAH 3.05164
305 5NMX FAD 3.05882
306 5NMX NAP 3.05882
307 1MO9 FAD 3.05927
308 1MO9 KPC 3.05927
309 3FPZ AHZ 3.06748
310 1GPE FAD 3.06859
311 4KGD TDP 3.06859
312 4KGD FAD 3.06859
313 6DEN TP9 3.06859
314 6DEN FAD 3.06859
315 6DEN G8A 3.06859
316 2AE2 PTO 3.07692
317 2AE2 NAP 3.07692
318 4OPC PGT 3.09051
319 4OPC FDA 3.09051
320 3F8D FAD 3.09598
321 4AP3 NAP 3.09654
322 4AP3 FAD 3.09654
323 1E6E FAD 3.125
324 1V8B NAD 3.13152
325 4UCI SAM 3.13253
326 1A5Z NAD 3.1348
327 1RYI GOA 3.14136
328 1RYI FAD 3.14136
329 6EL3 NAP 3.14961
330 2Q1S NAI 3.18302
331 4D42 W0I 3.19149
332 4D42 NAP 3.19149
333 1QZZ SAM 3.20856
334 1XKQ NDP 3.21429
335 3AYI FAD 3.2491
336 3AYI HCI 3.2491
337 4C4A SAH 3.2491
338 1BDB NAD 3.2491
339 6FP4 E1T 3.2491
340 6FP4 FAD 3.2491
341 6FHO FAD 3.2491
342 3Q9T FAY 3.2491
343 3VSE SAH 3.26633
344 1X87 NAD 3.26679
345 4X8O AP5 3.27103
346 3EVG SAH 3.27273
347 4X7Y SAH 3.28467
348 1ZPT FAD 3.28947
349 1AE1 NAP 3.2967
350 1UAY ADN 3.30579
351 4G5H NAP 3.30579
352 4G5H UD7 3.30579
353 1W6U NAP 3.31126
354 1NAA ABL 3.32717
355 1NAA 6FA 3.32717
356 4FZV SAM 3.34262
357 3FPF TNA 3.3557
358 3FPF MTA 3.3557
359 1XHL NDP 3.367
360 5BVA FAD 3.42298
361 2Z3Y F2N 3.4296
362 5OC1 FAD 3.4296
363 4M52 FAD 3.43348
364 4M52 M52 3.43348
365 5J60 FAD 3.4375
366 3CTY FAD 3.44828
367 2A8X FAD 3.44828
368 5EOW FAD 3.45679
369 3TKA SAM 3.45821
370 6GNA FAD 3.47222
371 1NVM NAD 3.47826
372 4XZ3 COA 3.47826
373 3OID NDP 3.48837
374 4D04 FAD 3.50554
375 4D04 NAP 3.50554
376 1MFI FHC 3.50877
377 1KNR FAD 3.51852
378 2DPM SAM 3.52113
379 1NJR XYL 3.52113
380 1RJW ETF 3.53982
381 2WSB NAD 3.54331
382 5M67 NAD 3.54906
383 5M67 ADE 3.54906
384 5M67 3D1 3.54906
385 1YQD NAP 3.55191
386 2G5C NAD 3.55872
387 4OM8 NAD 3.55987
388 3VYW SAM 3.57143
389 4C3Y ANB 3.58491
390 4C3Y FAD 3.58491
391 4MDH NAD 3.59281
392 2CFC NAD 3.6
393 5MDH NAD 3.6036
394 3QVP FAD 3.61011
395 3AB1 FAD 3.61111
396 4II2 ATP 3.61446
397 2B4Q NAP 3.62319
398 1YXM ADE 3.63036
399 3L9W AMP 3.63196
400 3L9W GSH 3.63196
401 3NUG NAD 3.64372
402 2JAP NDP 3.64372
403 1YQZ FAD 3.65297
404 4HXY NDP 3.65297
405 3A27 SAM 3.67647
406 4A6D SAM 3.68272
407 1EDO NAP 3.68852
408 5OJL TXP 3.69128
409 1BZL FAD 3.7037
410 1BZL GCG 3.7037
411 1Q1R FAD 3.7123
412 3FG2 FAD 3.71287
413 2VT3 ATP 3.72093
414 5K4W NAI 3.73832
415 5K4W THR 3.73832
416 4HA6 FAD 3.74016
417 3C2O NTM 3.7415
418 6GNC FAD 3.7415
419 5CUQ NSC 3.74532
420 3HDY GDU 3.77834
421 3HDY FDA 3.77834
422 3HDY FAD 3.77834
423 3A4V NAD 3.78549
424 3A4V PYR 3.78549
425 2DKH FAD 3.79061
426 2DKH 3HB 3.79061
427 4JDR FAD 3.79747
428 3C3Y SAH 3.79747
429 4BLW AMP 3.80623
430 4BLW SAH 3.80623
431 4RSL FAD 3.82022
432 4UP3 FAD 3.82166
433 2ZAT NAP 3.84615
434 4J36 FAD 3.85542
435 4J36 1HR 3.85542
436 1C0I BE2 3.85675
437 1C0I FAD 3.85675
438 1KEW NAD 3.87812
439 1UXG FUM 3.8835
440 1UXG NAD 3.8835
441 4ZGS NAD 3.88601
442 5MW4 5JU 3.89222
443 6FNU FAD 3.8961
444 2EFJ SAH 3.90625
445 1RKX NAD 3.92157
446 1NNU NAD 3.93013
447 1NNU TCT 3.93013
448 1RM0 D6P 3.93996
449 1RM0 NAI 3.93996
450 1BXK NAD 3.94366
451 5GWT NAD 3.95683
452 5GWT SIN 3.95683
453 1SC6 NAD 3.9604
454 3UCL CYH 3.97112
455 3UCL NAP 3.97112
456 3UCL FAD 3.97112
457 1V5F FAD 3.97112
458 1V5F TPP 3.97112
459 5GSN FAD 3.97351
460 5GSN NAP 3.97351
461 5GSN MMZ 3.97351
462 1E5Q NDP 4
463 5UR0 NAD 4.01146
464 1KOL NAD 4.0201
465 2JAH NDP 4.04858
466 1RLZ NAD 4.06504
467 3GRU AMP 4.0678
468 5Y8L NAD 4.0678
469 5Y8L HUI 4.0678
470 1Q7B NAP 4.09836
471 2VPY MGD 4.10256
472 2RAB FAD 4.10367
473 2RAB NAD 4.10367
474 1SQL GUN 4.10959
475 4O1M NAD 4.12698
476 3WV8 ATP 4.12844
477 3B1F NAD 4.13793
478 1R27 MGD 4.15162
479 4GLL NAD 4.1543
480 2YY7 NAD 4.16667
481 2PXX SAH 4.18605
482 4B63 NAP 4.19162
483 4B63 FAD 4.19162
484 4B63 ORN 4.19162
485 6CEP NAD 4.19162
486 5W7R SAH 4.1958
487 5W7R 9Z7 4.1958
488 1A69 FMB 4.20168
489 1ZQ9 SAM 4.21053
490 5ZBC FAD 4.21286
491 3WDM ADN 4.21456
492 4YKG FAD 4.22265
493 4YKG NAD 4.22265
494 6IS0 SAH 4.23387
495 2VVM FAD 4.24242
496 5K7U SAM 4.29799
497 2CUL FAD 4.31034
498 3RJ5 NAD 4.33071
499 1QO8 FAD 4.33213
500 1DJN ADP 4.33213
501 4LH7 1X8 4.33437
502 5EZ7 FAD 4.33673
503 4IWN GEK 4.36681
504 5MLR GRQ 4.37956
505 5MLR NAP 4.37956
506 1R18 SAH 4.40529
507 4USQ FAD 4.43213
508 3ITJ FAD 4.43787
509 5VN0 NAI 4.44015
510 5VN0 FAD 4.44015
511 1EJ0 SAM 4.44444
512 5FUB SAH 4.45104
513 5W7K SAH 4.48718
514 5G3U FDA 4.49173
515 5G3U ITW 4.49173
516 3OND ADN 4.5082
517 3OND NAD 4.5082
518 5EB4 FAD 4.51128
519 3GMB FAD 4.51264
520 1GUZ NAD 4.51613
521 1P1C SAH 4.52261
522 3EYA FAD 4.55373
523 5J7X FAD 4.55373
524 1D1T NAD 4.55764
525 4DMG SAM 4.58015
526 3WGT QSC 4.61095
527 3WGT FAD 4.61095
528 4WZH FMN 4.61095
529 4B4U NAP 4.62046
530 3A25 SAM 4.65116
531 2PT9 2MH 4.6729
532 2PT9 S4M 4.6729
533 1PN0 FAD 4.69314
534 1PN0 IPH 4.69314
535 3SIG AR6 4.69314
536 4FC7 NAP 4.69314
537 4FC7 COA 4.69314
538 3MB5 SAM 4.70588
539 3G5S FAD 4.74041
540 4EUE NAI 4.78469
541 4JCA CIT 4.79042
542 2AOT SAH 4.79452
543 1JQD SAH 4.79452
544 1JQD HSM 4.79452
545 1UP7 NAD 4.79616
546 2HQM FAD 4.80167
547 4ZRN UPG 4.80769
548 4ZRN NAD 4.80769
549 5FEU NAP 4.811
550 5OCM NAP 4.811
551 1VQW FAD 4.814
552 5HJM MTA 4.82955
553 2AQJ TRP 4.83271
554 2AQJ FAD 4.83271
555 4GUS FAD 4.83871
556 4HSU FAD 4.83871
557 4GUT FAD 4.83871
558 2WPF FAD 4.84848
559 2WPF WPF 4.84848
560 6ARJ BW4 4.87106
561 6ARJ SAH 4.87106
562 5DX1 SFG 4.87106
563 5DXA SFG 4.87106
564 5DX8 SFG 4.87106
565 5DWQ SFG 4.87106
566 5DX0 SFG 4.87106
567 1PS9 FAD 4.87365
568 1L1E SAH 4.87805
569 4D7E FAD 4.8951
570 3QUR FM4 4.8951
571 3QUR ADP 4.8951
572 5BJX UDP 4.91803
573 5BJX NAD 4.91803
574 2GV8 FAD 4.9217
575 2GVC FAD 4.9217
576 5YJI 8WO 4.92958
577 5YJI SAH 4.92958
578 5FWA J7C 4.93274
579 2O07 SPD 4.93421
580 2O07 MTA 4.93421
581 3ZV6 NAD 4.98221
582 3ZV6 4HB 4.98221
583 1XG5 NAP 5.01792
584 3SJU NDP 5.01792
585 4J4H NAI 5.01931
586 4J4H 1J1 5.01931
587 4JK3 NAD 5.01931
588 2IID PHE 5.02008
589 2IID FAD 5.02008
590 4Z24 FAD 5.05415
591 1XDS SAM 5.08021
592 1EFV FAD 5.09804
593 1EFV AMP 5.09804
594 3OJO NAD 5.10441
595 4YSX FAD 5.12821
596 2Q46 NAP 5.13834
597 3SJ7 NDP 5.15873
598 1OC2 NAD 5.17241
599 1OC2 TDX 5.17241
600 5YGE ACO 5.17241
601 5KMS FAD 5.18518
602 5KMS NAD 5.18518
603 2A8Y MTA 5.18518
604 4YAG NAI 5.19031
605 5Z75 NAD 5.19878
606 1DLJ UGA 5.22388
607 1DLJ NAI 5.22388
608 3GD4 FAD 5.28376
609 3GD4 NAD 5.28376
610 3NDJ SAH 5.28846
611 3NDJ JHZ 5.28846
612 2I7C AAT 5.30035
613 1O97 FAD 5.30303
614 1O97 AMP 5.30303
615 1O94 ADP 5.30303
616 1FEC FAD 5.30612
617 4AZW SAM 5.30786
618 5MPT SAH 5.31401
619 1WY7 SAH 5.31401
620 1U3U NAD 5.34759
621 1U3U BNF 5.34759
622 1ZK7 FAD 5.35332
623 5XNC MTA 5.39084
624 1VDC FAD 5.40541
625 4PLG NAI 5.41516
626 4PLG OXM 5.41516
627 5X62 SAH 5.41872
628 9LDT NAD 5.42169
629 9LDB NAD 5.42169
630 1XSE NDP 5.42373
631 2FKA BEF 5.42636
632 5FFF 5XC 5.44747
633 5FFF NAP 5.44747
634 4E5N NAD 5.45455
635 1KYQ NAD 5.47445
636 3NJ4 NAD 5.51724
637 5TWB FAD 5.52326
638 3FUU ADN 5.53506
639 2HMT NAI 5.55556
640 5TS5 FAD 5.57851
641 3TLJ SAH 5.59567
642 4YT4 FE9 5.6
643 4J1Q NDP 5.60345
644 4MP8 NAD 5.60472
645 4MP8 MLI 5.60472
646 4EMJ FAD 5.60748
647 1H0H MGD 5.60748
648 2GDZ NAD 5.61798
649 1NV8 MEQ 5.6338
650 1NV8 SAM 5.6338
651 6ER9 NAP 5.64663
652 6ER9 FAD 5.64663
653 1N2X SAM 5.64784
654 1RJD SAM 5.68862
655 4BUZ NAD 5.69106
656 4BUZ OAD 5.69106
657 4BUZ OCZ 5.69106
658 1YC5 NCA 5.69106
659 5JCA FAD 5.6962
660 5JCA NDP 5.6962
661 3KLJ FAD 5.71429
662 5Z2L NDP 5.71429
663 6GAR FAD 5.73066
664 5ZYN FAD 5.73248
665 1KYZ FER 5.75342
666 1KYZ SAH 5.75342
667 2PZM NAD 5.75758
668 2PZM UDP 5.75758
669 1REO FAD 5.76132
670 4D86 ADP 5.78313
671 6DNT NAD 5.81395
672 1SAY PYR 5.81717
673 1CDO NAD 5.88235
674 5THQ NDP 5.88235
675 4Y9D NAI 5.90164
676 1UDB NAD 5.91716
677 1UDB UFG 5.91716
678 1ZBQ NAD 5.95668
679 4Y30 49L 5.98291
680 4Y30 SAH 5.98291
681 1KQF MGD 5.99078
682 1JNR FAD 6
683 2Q1W NAD 6.00601
684 6GAS FAD 6.0423
685 2IVF MGD 6.07477
686 6BWL NAD 6.09756
687 1U7T TDT 6.13027
688 4CQM NAP 6.13027
689 1E3W NAD 6.13027
690 1U7T NAD 6.13027
691 1E6W NAD 6.15385
692 1G60 SAM 6.15385
693 6CI9 NAP 6.17761
694 4ONA UW1 6.19835
695 5BUK FAD 6.22222
696 4RDH AMP 6.25
697 4RDI ATP 6.25
698 4P6X HCY 6.27451
699 4BV6 FAD 6.28803
700 3ZNN FAD 6.34006
701 3ZNN 4WL 6.34006
702 3G2O SAM 6.35452
703 4EA7 COA 6.36364
704 4EA7 JB2 6.36364
705 5EEH SAH 6.38298
706 5EEH P9P 6.38298
707 5YU3 NAD 6.39535
708 5YU3 PRO 6.39535
709 4YAC NAI 6.39731
710 5E9W SAH 6.41026
711 5E8J SAH 6.41026
712 2RGO FAD 6.42504
713 3CBG SAH 6.46552
714 2BGM NAJ 6.47482
715 2NPX NAD 6.4877
716 2NPX FAD 6.4877
717 2OD9 A1R NCA 6.49351
718 2QQF A1R 6.49351
719 5WP4 SAH 6.51731
720 3I53 SAH 6.62651
721 4W6Z 8ID 6.62824
722 1Z83 AP5 6.63265
723 2RGH FAD 6.65499
724 3CGD FAD 6.66667
725 3CGD COA 6.66667
726 3CGB FAD 6.66667
727 3CGD NAD 6.66667
728 4NBT NAD 6.66667
729 2EG5 SAH 6.72043
730 5WP5 SAH 6.72098
731 5YEC ATP 6.72269
732 1SZD APR 6.73401
733 3U4C NDP 6.76157
734 5DF1 NAP 6.79348
735 5DF1 58X 6.79348
736 1XHC FAD 6.81199
737 1SB8 NAD 6.81818
738 1SB8 UD2 6.81818
739 1R6D NAD 6.82493
740 1R6D DAU 6.82493
741 3GEG NAD 6.88259
742 4D79 ATP 6.88406
743 1U1I NAD 6.88775
744 2BZG SAH 6.89655
745 3QFA FAD 6.89655
746 5JAQ NAI 6.89655
747 1NM5 NAP 6.89655
748 1NM5 NAD 6.89655
749 5O4J 9KH 6.93431
750 5O4J PJL 6.93431
751 5O4J SAH 6.93431
752 5K0A FAD 6.9697
753 4POO SAM 7
754 3HB5 NAP 7.03364
755 5D4V SAH 7.08955
756 5DLY 5D7 7.14286
757 5DLY SAH 7.14286
758 2PK3 A2R 7.16511
759 4Z0H NAD 7.18563
760 1J49 NAD 7.20721
761 5ZZ6 NAD 7.21154
762 5ZZ6 ADP 7.21154
763 2RH4 EMO 7.22022
764 2FAV APR 7.22222
765 1V6A TRE 7.22892
766 4PLT NAI 7.25076
767 4PLT OXM 7.25076
768 2VVL FAD 7.27273
769 1TPY SAH 7.31707
770 4JNA FAD 7.35294
771 4NTD FAD 7.35294
772 5NA1 FAD 7.35294
773 1YKJ PHB 7.36041
774 1YKJ FAD 7.36041
775 1QAN SAH 7.37705
776 4MOP 2H5 7.42496
777 1BC5 SAH 7.43494
778 5EJ2 NAD 7.46753
779 3O7W SAM 7.48299
780 1VL8 NAP 7.49064
781 3FRH SAH 7.50988
782 4JJF FE9 7.55814
783 5ERG SAM 7.5718
784 2XYQ SAH 7.58621
785 1M2K APR 7.63052
786 5O42 NAD 7.66423
787 5O42 9JW 7.66423
788 5O42 BGC 7.66423
789 6GKV SAH 7.69231
790 1PR9 NAP 7.78689
791 3D3W NAP 7.78689
792 3SSO SAH 7.8759
793 4J56 FAD 7.89474
794 5U8U FAD 7.90021
795 5ICE SAH 7.95455
796 5ICE 2H4 7.95455
797 2NVK FAD 7.9918
798 3VC1 GST 8.01282
799 3VC1 SAH 8.01282
800 3CH6 311 8.04196
801 3CH6 NAP 8.04196
802 4URF NAD 8.06452
803 3AD8 NAD 8.08081
804 3AD8 FAD 8.08081
805 3AD8 PYC 8.08081
806 4MO2 FDA 8.15217
807 4MO2 FAD 8.15217
808 5WS9 AMP 8.21053
809 3EVF SAH 8.30325
810 3EVF GTA 8.30325
811 2DTX BMA 8.33333
812 3OFK SAH 8.33333
813 2Q0L FAD 8.36013
814 4U8P UDP 8.38207
815 4U8P FDA 8.38207
816 2WDQ TEO 8.40336
817 1HYH NAD 8.41424
818 2EWM NAD 8.43373
819 4DSG UDP 8.47107
820 4DSG FAD 8.47107
821 1G0N NDP 8.48057
822 1G0N PHH 8.48057
823 3DUW SAH 8.52018
824 6CZ7 MGD 8.54701
825 2GAG NAD 8.57143
826 2GAG FOA 8.57143
827 2GAG FAD 8.57143
828 3HVJ 705 8.59729
829 3RFV 15L 8.61423
830 3RFV NAI 8.61423
831 4L2I FAD 8.74525
832 5L95 AMP 8.75
833 1DL5 SAH 8.83281
834 5DUS APR 8.92857
835 5Z21 NAI 8.93855
836 5DM1 SAH 8.98876
837 5DM1 5D7 8.98876
838 5IL1 SAM 9
839 5KOX RFP 9.03361
840 5KOX FAD 9.03361
841 3MAG SAH 9.12052
842 5WKC FAD 9.20578
843 1T9D P25 9.20578
844 1T9D 1MM 9.20578
845 1T9D PYD 9.20578
846 1T9D FAD 9.20578
847 2Q7V FAD 9.23077
848 2F5Z FAD 9.375
849 6H3O FAD 9.38628
850 3MCT SAH 9.42761
851 1JA9 NDP 9.48905
852 3FZG SAM 9.5
853 1H2B NAJ 9.7493
854 3LCC SAH 9.78723
855 3LAD FAD 9.87395
856 1ZEM NAD 9.92366
857 5XLX SAH 9.92908
858 3C6K SPD 9.97375
859 3C6K MTA 9.97375
860 3U31 NAD 10
861 1R37 NAD 10.0865
862 4M73 M72 10.089
863 4M73 SAH 10.089
864 4OBW SAM 10.1167
865 5THY SAH 10.1235
866 5THZ SAH 10.1235
867 1WG8 SAM 10.1754
868 1G8K MGD 10.5263
869 1PNO NAP 10.5556
870 2JJQ SAH 10.5882
871 2OOR TXP 10.9195
872 2OOR NAD 10.9195
873 3DMH SAM 11.0236
874 3DMH GMP 11.0236
875 5KOK S9T 11.0831
876 5KOK R9T 11.0831
877 5KOK SAH 11.0831
878 3SQP FAD 11.0879
879 1JQ3 AAT 11.1486
880 3NK7 SAM 11.1913
881 6EQS BV8 11.2727
882 3RIY NAD 11.3553
883 5FA5 MTA 11.4441
884 1S7G APR 11.4625
885 1S7G NAD 11.4625
886 4NBW NAD 11.6732
887 5FTW SAH 11.7188
888 2H88 TEO 11.9048
889 5GWX SAR 11.9718
890 5GWX SAM 11.9718
891 4X60 SFG 12
892 4X60 3XV 12
893 3RNM FAD 12.069
894 4GQB 0XU 12.2093
895 6B92 SAH 12.2449
896 4ONQ SFG 12.3249
897 4XUC SAM 12.3853
898 4XUC 43G 12.3853
899 4NBU NAI 12.4
900 4USR FAD 12.4654
901 1LSS NAD 12.8571
902 6F9Q NAD 12.8676
903 6HOY AR6 12.9139
904 6HOY TSN 12.9139
905 3GU3 SAH 13.0282
906 2ALG DAO 13.0435
907 2A92 NAI 13.0841
908 3ZG6 APR 13.1757
909 3A28 NAD 13.1783
910 2VBU CDP 13.2353
911 2NXE SAM 13.3858
912 5CLO NS8 13.5593
913 5ODQ FAD 13.5714
914 1KPG SAH 13.5889
915 2XA2 UPG 13.7019
916 1NFQ NAI 13.8462
917 4DCM SAM 14.1333
918 1KPH SAH 14.2857
919 6GFK SAH 14.3426
920 1GEG NAD 14.4531
921 1JG3 ADN 14.8936
922 2HK9 NAP 14.9091
923 3P9C SAH 15.1099
924 5ZW3 SAH 15.1111
925 1IM8 SAI 15.1639
926 4YRY NAD 15.2174
927 4YRY FAD 15.2174
928 4QTU SAM 16.3462
929 1I1N SAH 16.3717
930 5E1M SAH 16.5975
931 5E1M PRO PRO LYS ARG ILE ALA 16.5975
932 2VDV SAM 16.6667
933 2PWY SAH 16.6667
934 5M58 SAH 16.9565
935 4ZA2 NAD 16.996
936 5MGZ SAH 17.3729
937 5N0J FAD 17.3789
938 3JWH SAH 17.5115
939 3DXY SAM 17.8899
940 4R6W PC 18.2171
941 4R6W SAH 18.2171
942 3GDH SAH 18.6722
943 3TN7 NJP 18.677
944 3Q87 SAM 19.2
945 3H9E NAD 20.2312
946 3A4T SFG 20.8029
947 6DUB SAH 21.1712
948 3EGI ADP 21.8447
949 1KQN NAD 22.2222
950 1VE3 SAM 22.467
951 1Z3C SA8 23.1544
952 2XVM SAH 24.6231
Pocket No.: 2; Query (leader) PDB : 5DNK; Ligand: SAH; Similar sites found with APoc: 38
This union binding pocket(no: 2) in the query (biounit: 5dnk.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 1DMR PGD 1.44404
2 1F8G NAD 1.5625
3 5K7K 6RJ 1.67715
4 2DFV NAD 2.30548
5 4KWI NAP 2.6616
6 4KWI 1TJ 2.6616
7 2Z9I GLY ALA THR VAL 2.77778
8 5WUW NAP 2.78746
9 5UAV TFB 2.79503
10 5UAV NDP 2.79503
11 1OFZ FUL 2.88462
12 1DSS NAD 3.3033
13 4IX4 ADP 3.42857
14 4NZ6 DLY 3.51438
15 3EWR APR 3.57143
16 1I2B USQ 3.71287
17 1I2B NAD 3.71287
18 1I2B UPG 3.71287
19 1TDF FAD 3.79747
20 3KB6 NAD 3.89222
21 6CEP OXM 4.19162
22 4JAL SAH 4.19162
23 1V35 NAI 4.25532
24 3BMQ NAP 4.51389
25 4CM9 NAP 4.51389
26 5K6A NAP 4.51389
27 5JDC NAP 4.51389
28 5JDI NAP 4.51389
29 1B8O IMH 5.28169
30 3PN1 IVH 5.66038
31 3DJF BC3 6.27178
32 2A0W DIH 7.26644
33 6F7X MFU 7.77778
34 1M2Z DEX 9.33852
35 1J0X NAD 10.5422
36 5OJI ISN 11.9231
37 5OJI NAP 11.9231
38 3GN8 DEX 17.6707
APoc FAQ