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Receptor
PDB id Resolution Class Description Source Keywords
5DI3 2.5 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF ARL13B IN COMPLEX WITH ARL3 OF CHLAMYDO REINHARDTII CHLAMYDOMONAS REINHARDTII G-PROTEIN ADP RIBOSYLATION LIKE PROTEIN COMPLEX GUANINE NEXCHANGE FACTOR HYDROLASE
Ref.: A G-PROTEIN ACTIVATION CASCADE FROM ARL13B TO ARL3 IMPLICATIONS FOR CILIARY TARGETING OF LIPIDATED PRO ELIFE V. 4 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GNP A:201;
B:301;
Valid;
Valid;
none;
none;
submit data
522.196 C10 H17 N6 O13 P3 c1nc2...
MG B:302;
A:202;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5DI3 2.5 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF ARL13B IN COMPLEX WITH ARL3 OF CHLAMYDO REINHARDTII CHLAMYDOMONAS REINHARDTII G-PROTEIN ADP RIBOSYLATION LIKE PROTEIN COMPLEX GUANINE NEXCHANGE FACTOR HYDROLASE
Ref.: A G-PROTEIN ACTIVATION CASCADE FROM ARL13B TO ARL3 IMPLICATIONS FOR CILIARY TARGETING OF LIPIDATED PRO ELIFE V. 4 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 5DI3 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 5DI3 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 5DI3 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GNP; Similar ligands found: 132
No: Ligand ECFP6 Tc MDL keys Tc
1 GNP 1 1
2 9GM 1 1
3 GDP 0.839506 0.973684
4 GP3 0.82716 0.948718
5 GTP 0.809524 0.973684
6 GNH 0.807229 0.986842
7 G1R 0.77907 0.961039
8 GCP 0.77907 0.948718
9 GSP 0.770115 0.925
10 5GP 0.756098 0.960526
11 G 0.756098 0.960526
12 G2R 0.747253 0.936709
13 GMV 0.747126 0.948718
14 GAV 0.714286 0.936709
15 GP2 0.712644 0.936709
16 G2P 0.711111 0.936709
17 Y9Z 0.708333 0.880952
18 GDC 0.690722 0.936709
19 GDD 0.690722 0.936709
20 GKE 0.690722 0.936709
21 G5P 0.686869 0.948718
22 GPG 0.684211 0.936709
23 GTG 0.683673 0.91358
24 GDR 0.683673 0.936709
25 GFB 0.683673 0.936709
26 JB2 0.68 0.936709
27 GKD 0.68 0.936709
28 6CK 0.676768 0.91358
29 G3A 0.676768 0.948718
30 GDX 0.673267 0.948718
31 ALF 5GP 0.67033 0.86747
32 YGP 0.663265 0.879518
33 GPD 0.656863 0.902439
34 ALF GDP 0.645833 0.86747
35 GDP AF3 0.645833 0.86747
36 GDP ALF 0.645833 0.86747
37 JB3 0.641509 0.925
38 DBG 0.640351 0.974359
39 G3D 0.638298 0.960526
40 G4P 0.625 0.960526
41 GMP 0.621951 0.857143
42 NGD 0.62037 0.936709
43 GGM 0.618182 0.925926
44 0O2 0.616162 0.960526
45 2MD 0.603604 0.870588
46 CAG 0.60177 0.904762
47 U2G 0.590909 0.91358
48 FEG 0.590909 0.858824
49 GDP 7MG 0.590476 0.888889
50 MGD 0.587719 0.870588
51 G G 0.586538 0.924051
52 ZGP 0.585586 0.848837
53 CG2 0.580357 0.91358
54 ANP 0.568421 0.922078
55 PGD 0.567797 0.902439
56 MD1 0.567797 0.870588
57 3GP 0.56044 0.922078
58 TPG 0.558333 0.822222
59 GH3 0.55 0.948052
60 FE9 0.546219 0.778947
61 GPX 0.539216 0.922078
62 G4M 0.539062 0.860465
63 DGI 0.536082 0.9
64 BGO 0.535088 0.901235
65 IDP 0.53125 0.947368
66 DGT 0.53 0.9
67 2GP 0.526882 0.935065
68 G1R G1R 0.520325 0.901235
69 GCP G 0.518868 0.897436
70 A G 0.516949 0.911392
71 U A G G 0.512605 0.911392
72 G A A A 0.504202 0.9
73 AGO 0.504202 0.91358
74 P2G 0.5 0.860759
75 G1G 0.5 0.902439
76 R7I 0.49505 0.922078
77 MGP 0.49505 0.936709
78 R5I 0.49505 0.922078
79 PGD O 0.492063 0.831461
80 6G0 0.490196 0.936709
81 P1G 0.489796 0.85
82 AKW 0.483051 0.869048
83 DG 0.474227 0.8875
84 DGP 0.474227 0.8875
85 G U 0.466667 0.878049
86 IMP 0.463918 0.934211
87 G2Q 0.462963 0.936709
88 GPC 0.459677 0.858824
89 G C 0.459016 0.878049
90 GTA 0.448276 0.91358
91 G7M 0.444444 0.924051
92 MAP 0.439252 0.898734
93 G G G RPC 0.435484 0.853659
94 B4P 0.434343 0.871795
95 AP5 0.434343 0.871795
96 ADP 0.434343 0.896104
97 A2D 0.43299 0.871795
98 AT4 0.43 0.8625
99 G G G C 0.426357 0.890244
100 AU1 0.425743 0.922078
101 SGP 0.425743 0.807229
102 BA3 0.424242 0.871795
103 A G C C 0.423077 0.888889
104 35G 0.423077 0.909091
105 PCG 0.423077 0.909091
106 C2E 0.423077 0.897436
107 APC G U 0.421875 0.864198
108 HEJ 0.421569 0.896104
109 ATP 0.421569 0.896104
110 ACQ 0.419048 0.873418
111 5GP 5GP 0.419048 0.860759
112 5FA 0.417476 0.896104
113 AQP 0.417476 0.896104
114 01G 0.417391 0.880952
115 AN2 0.415842 0.909091
116 UNP 0.415842 0.810127
117 6AD 0.415094 0.821429
118 M33 0.411765 0.860759
119 ITT 0.411765 0.846154
120 G C C C 0.410448 0.901235
121 HFD 0.409524 0.851852
122 G U34 0.408 0.86747
123 ACP 0.407767 0.873418
124 6YZ 0.407407 0.873418
125 AR6 0.403846 0.871795
126 APR 0.403846 0.871795
127 DG DG 0.403509 0.845238
128 A4P 0.403226 0.848837
129 UCG 0.402985 0.888889
130 SAP 0.4 0.851852
131 AGS 0.4 0.851852
132 AD9 0.4 0.873418
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5DI3; Ligand: GNP; Similar sites found with APoc: 561
This union binding pocket(no: 1) in the query (biounit: 5di3.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 3BFV ADP 1.52091
2 3BD9 A3P 1.90114
3 3BFX A3P 2.28137
4 1YQC GLV 2.35294
5 1T5C ADP 2.6616
6 4BFW ZVW 2.7027
7 1P72 ADP 3.04183
8 1LVW TYD 3.04183
9 5E5U MLI 3.04183
10 1DAK ADP 3.125
11 1DAK DPU 3.125
12 2OG2 MLI 3.24324
13 3E70 GDP 3.24324
14 4IOK ADP 3.42205
15 4IOK XPO 3.42205
16 1W5T ANP 3.42205
17 1W5T ADP 3.42205
18 4NE2 SH2 3.78378
19 4NE2 ADP 3.78378
20 3P4X ADP 3.78378
21 4IHQ ADP 3.80228
22 3KTA AP5 3.84615
23 4U5X GNP 3.93258
24 2W58 ADP 3.9604
25 3UIE ANP 4
26 1SQL GUN 4.10959
27 3ZQ6 ADP ALF 4.18251
28 5NM7 GLY 4.18251
29 6ACS CIT 4.26357
30 4GOX A3P 4.32432
31 1OS1 PYR 4.32432
32 1OS1 ATP 4.32432
33 1Z6T ADP 4.32432
34 2CHG ANP 4.32432
35 1NST A3P 4.32432
36 5WRJ A3P 4.32432
37 5WRI A3P 4.32432
38 1XEX ATP 4.3956
39 1LVK MNT BEF 4.56274
40 2WGV CIT 4.83871
41 1JJV ATP 4.85437
42 5L3V GDP 4.86486
43 4IDN GNP 4.86486
44 5I34 GDP 4.86486
45 1GOJ ADP 4.86486
46 1CR1 TTP 4.86486
47 3BOS CDP 4.86486
48 1ZX5 LFR 4.86486
49 1W4R TTP 4.86486
50 1T8U UAP SGN IDS SGN 4.86486
51 3V0H I3P 4.86486
52 5MZN ADP 4.94297
53 4D81 ADP 4.94297
54 2GJ5 VD3 4.94297
55 4O48 ASP 4.94297
56 3LN9 FLC 5.03597
57 4M7V NAP 5.14286
58 3DZD ADP 5.32319
59 3FB4 AP5 5.40541
60 3QXC ATP 5.40541
61 4MKF AP5 5.40541
62 4MKG AP5 5.40541
63 1G3Q ADP 5.40541
64 3TMK T5A 5.40541
65 1ION ADP 5.40541
66 3COB ADP 5.40541
67 1BG2 ADP 5.40541
68 3RC3 ANP 5.40541
69 1UKZ ADP 5.40541
70 4R43 GDP 5.40541
71 2XAU ADP 5.40541
72 5TIV A3P 5.40541
73 4UXH T5A 5.43478
74 1QF9 C5P 5.6701
75 1QF9 ADP 5.6701
76 1QF9 ALF 5.6701
77 2RCN GDP 5.70342
78 1G6O ADP 5.70342
79 4AG5 ADP 5.70342
80 4PJ3 ANP 5.70342
81 3A4M ADP 5.76923
82 6CI9 F3V 5.79151
83 1QHH ATP 5.91716
84 5ZBR ANP 5.94595
85 4NU0 AP5 5.94595
86 1VKJ A3P 5.94595
87 1ZIN AP5 5.94595
88 1YTM ATP 5.94595
89 2ZR9 DTP 5.94595
90 1FNN ADP 5.94595
91 4DDY DN6 5.94595
92 1XP8 AGS 5.94595
93 3QVV A3P 5.94595
94 5ZB0 ADP 5.94595
95 5ZB0 TYD 5.94595
96 4GNC ASO 5.94595
97 5GVR LMR 5.98291
98 1PTR PRB 6
99 6B8B ADP 6.0241
100 1QF5 GDP 6.08365
101 1QF5 RPL 6.08365
102 1V8K ANP 6.08365
103 6B4K ANP 6.08365
104 4WZ6 ATP 6.08365
105 4YS0 ADP 6.08365
106 1FP6 ADP 6.22837
107 2D2F ADP 6.4
108 1B7T ADP 6.41026
109 1VHT BA3 6.42202
110 1G7S GDP 6.46388
111 4LC1 GDP 6.48649
112 2XTN GTP 6.48649
113 1F5N GNP 6.48649
114 2B8W ALF 5GP 6.48649
115 1U0J ADP 6.48649
116 3TBK ANP 6.48649
117 4PFO ADP 6.48649
118 1SVM ATP 6.48649
119 1XKV ATP 6.48649
120 2NCD ADP 6.48649
121 5EXT ADP 6.48649
122 1G41 ADP 6.48649
123 4PX9 ADP 6.48649
124 1KK8 BEF ADP 6.49351
125 1JJ7 ADP 6.53846
126 5BYK A3P 6.56371
127 5BYK OAQ 6.56371
128 3IIJ ADP 6.66667
129 4TL6 ANP 6.71937
130 1ZUI SKM 6.84411
131 1YRB GDP 6.87023
132 3B9Q MLI 7.02703
133 3MD0 GDP 7.02703
134 4ZG4 VO4 ADP 7.02703
135 2FSH ANP 7.02703
136 1NJF AGS 7.02703
137 1XMV ADP 7.02703
138 1NJF ADP 7.02703
139 3FVQ ATP 7.02703
140 3H4S ADP 7.02703
141 4FRZ ADP 7.02703
142 3NHB ADP 7.02703
143 3IUY AMP 7.02703
144 4ZDJ UTP 7.02703
145 5LB3 ADP 7.02703
146 4TMK T5A 7.02703
147 4KFU ACP 7.07547
148 4R98 GNH 7.22433
149 4CVN ADP 7.29927
150 1KO8 6PG 7.42857
151 6AIC AMP 7.47664
152 1JI0 ATP 7.5
153 2QG6 NMN 7.53769
154 4WZA ACP 7.56757
155 4WZA ADP 7.56757
156 2HF9 GSP 7.56757
157 2WOJ ADP ALF 7.56757
158 3FWY ADP 7.56757
159 4XTR ATP 7.56757
160 4XVU ATP 7.56757
161 2QEN ADP 7.56757
162 4XTR ADP 7.56757
163 5Y6N ADP 7.56757
164 1G6H ADP 7.56757
165 5DRB 5FJ 7.56757
166 1Z83 AP5 7.56757
167 1D2N ANP 7.56757
168 2GJP MAL 7.56757
169 2ZPA ADP 7.60456
170 4QRH 0O2 7.61905
171 1S3G AP5 7.8341
172 4TTQ ATP 7.90698
173 2Q2Y ADP 7.98479
174 2Q2Y MKR 7.98479
175 1G7C 5GP 8.10811
176 3DC4 ADP 8.10811
177 3H86 AP5 8.10811
178 2WHX ADP 8.36502
179 1XX6 ADP 8.36502
180 1IHU ADP 8.36502
181 1IHU AF3 8.36502
182 1SQ5 ADP 8.36502
183 1RRC ADP 8.36502
184 1B0U ATP 8.39695
185 4BQS K2Q 8.52273
186 4BQS ADP 8.52273
187 3DKP ADP 8.57143
188 4LPS GDP 8.64865
189 1IWE IMP 8.64865
190 2JLR ANP 8.64865
191 3FYH ADP 8.64865
192 2GDJ ANP 8.64865
193 2Y65 ADP 8.74525
194 2QQ0 TMP 8.74525
195 2QQ0 ADP 8.74525
196 2QQ0 ANP 8.74525
197 2QQ0 THM 8.74525
198 1F9V ADP 8.74525
199 5DT6 GLU 8.74525
200 1GXU 2HP 8.79121
201 2PL3 ADP 8.8983
202 1M7G ADX 9.00474
203 1M7G AV2 9.00474
204 1M7G ADP 9.00474
205 5L3R GCP 9.12547
206 4PU6 ASP 9.16031
207 4RD0 GDP 9.18919
208 5I0H ADP BEF 9.18919
209 1OXV ANP 9.18919
210 2CDN ADP 9.18919
211 3FIU POP 9.18919
212 2X7I CIT 9.18919
213 1Z0N BCD 9.375
214 1ZOY UQ1 9.70874
215 4IEE AGS 9.72973
216 2YOH WMJ 9.72973
217 5ZXD ATP 9.72973
218 4QM7 GTP 9.72973
219 2VB6 ADP BEF 9.88593
220 2IXE ATP 9.88593
221 3ITJ CIT 9.88593
222 4R2I ANP 10
223 1U3G ADP 10.0529
224 1SVI GDP 10.2564
225 1PUJ GNP 10.2703
226 5HCN GCP 10.2703
227 4H1V GNP 10.2703
228 4A4Z ANP 10.2703
229 4KBF AMP 10.2703
230 5UIV ADP 10.2703
231 2D7D ADP 10.2703
232 3RLF ANP 10.2703
233 2AWN ADP 10.2703
234 1OFH ADP 10.3448
235 5N69 ADP 10.6464
236 3Q85 GNP 10.6509
237 4WOP CTP 10.6667
238 2QN6 GDP 10.7527
239 5HR5 ADP 10.8108
240 5Z69 AGS 10.8108
241 2ZJ5 ADP 10.8108
242 2BVN GNP 11.3514
243 1D8T GDP 11.3514
244 1RJ9 GCP 11.3514
245 2IYL GDP 11.3514
246 2OFW ADX 11.3514
247 1X6V ADP 11.3514
248 2KIN ADP 11.3514
249 1G8S MET 11.3514
250 1WRA PC 11.3514
251 1SKQ GDP 11.4068
252 3ZFD ANP 11.4068
253 4QOS ADP 11.4068
254 6G14 G4P 11.8919
255 1D2E GDP 11.8919
256 1L2T ATP 11.8919
257 1OYY AGS 11.8919
258 1IN4 ADP 11.8919
259 3B5J 12D 11.8919
260 3TW1 AHN 11.8919
261 3HU3 AGS 12.1673
262 2PEZ GGZ 12.2905
263 2PEZ DAT 12.2905
264 2C78 GNP 12.4324
265 2C77 GNP 12.4324
266 5FG3 GDP 12.4324
267 1DAR GDP 12.4324
268 4Q1A UDP 12.4324
269 4Q1A 2XZ 12.4324
270 2FAH GDP 12.4324
271 5TSH ANP 12.4324
272 3R7F CP 12.4324
273 5TSH ADP 12.4324
274 4HSE ADP 12.5475
275 2ORV 4TA 12.8205
276 5L3S GNP 12.9278
277 5L3S G 12.9278
278 1LVG ADP 12.973
279 3TK1 GDP 12.973
280 2DPY ADP 12.973
281 2ZFI ADP 12.973
282 2BIF SIN 12.973
283 2BIF ANP 12.973
284 1NHX FTB 12.973
285 1NHX PEP 12.973
286 2GMV UN8 12.973
287 2IS6 ADP 12.973
288 2GMV PEP 12.973
289 3IX9 NDP 13.1579
290 1W7J ADP BEF 13.245
291 3EC1 GDP 13.308
292 4P4T GDP 13.308
293 6DEF GCP 13.308
294 2CE7 ADP 13.308
295 1NY5 ADP 13.308
296 6C90 ADP 13.4615
297 1AKY AP5 13.5135
298 1K6M AGS 13.5135
299 4GBM A3P 13.5135
300 3BER AMP 13.5135
301 3QF7 ANP 14
302 2RGX AP5 14.0541
303 2GK6 ADP 14.0541
304 5U32 GDP 14.0541
305 2BEK ATP 14.0541
306 3KJI ADP 14.0684
307 5BN3 ADP 14.0684
308 3W5J GDP 14.7059
309 3WXM GTP 14.8289
310 1BO4 COA 14.881
311 5L3W GDP 15.1351
312 2GKS ADP 15.1351
313 1W0J ADP 15.1351
314 2CK3 ANP 15.1351
315 4LIK CIT 15.1351
316 2CK3 ADP 15.1351
317 1W0J ADP BEF 15.1351
318 1VMK GUN 15.5235
319 3QKT ANP 15.5894
320 1RYH GNP 15.6757
321 2O0J ADP 15.6757
322 2HCJ GDP 16.2162
323 2J0V GDP 16.2162
324 1P4V GLY 16.2162
325 2J5V PCA 16.3498
326 1MKY GDP 16.7568
327 1P9B GDP 17.2973
328 1E2K TMC 17.2973
329 4ZNL BEF ADP 17.2973
330 4YMU ATP 17.2973
331 3B7G ANP 17.2973
332 2WKQ GTP 17.8378
333 2ZE7 AMP 17.8378
334 2ZE7 DST 17.8378
335 1G4U GDP 17.9348
336 1G4U AF3 17.9348
337 1I4D GDP 18.3784
338 4U00 ADP 18.3784
339 2W2X GSP 18.9189
340 5UPK GNP 18.9189
341 3REF GDP 18.9189
342 1DS6 GDP 18.9189
343 3DEF GDP 18.9189
344 2FJU GSP 19.1011
345 4X8O AP5 19.1589
346 1P6O HPY 19.2547
347 2XT3 ADP 19.4595
348 2ZEJ GDP 19.5652
349 5KSZ GCP 19.7719
350 1NF3 GNP 20
351 5XKT GNP 20
352 5AK0 8V1 20.1521
353 2ODE ALF GDP 20.5405
354 1A4R GDP 20.5405
355 1GRN GDP 20.5405
356 1A4R GNH 20.5405
357 4ITR GDP 20.5405
358 1GRN AF3 20.5405
359 2NGR GDP 20.5405
360 4DID GDP 20.5405
361 1H65 GDP 20.5405
362 2NGR AF3 20.5405
363 1UJ2 C5P 20.5405
364 1UJ2 ADP 20.5405
365 3ZIA ATP 20.6349
366 3ZIA ADP 20.6349
367 2XTZ GSP 21.0811
368 1BH2 GSP 21.0811
369 1Y3A GDP 21.0811
370 2OM2 GDP 21.0811
371 6CRK GDP 21.0811
372 1GP2 GDP 21.0811
373 5KDO GDP 21.0811
374 5CK5 GDP 21.0811
375 3VPD CIT 21.0811
376 1X1R GDP 21.3483
377 1CS4 GSP 21.6216
378 6AU6 GDP 21.6216
379 2WIC GNP 21.7228
380 1R6B ADP 22.0532
381 4HI0 GDP 22.1622
382 3A1S GDP 22.1622
383 2VVG ADP 22.1622
384 4FCW ADP 22.1622
385 5BQ5 ADP BEF 22.2222
386 1NN5 2DT 22.3256
387 1NN5 ANP 22.3256
388 3VX3 ADP 22.5806
389 5X40 ACP 22.6027
390 4LJ9 ACP 23.2432
391 6CS8 F9Y 23.7838
392 1SVK ALF GDP 24.3243
393 1TAD ALF 24.3243
394 1TAD GDP 24.3243
395 1GOT GDP 24.3243
396 4OI4 ATP 24.3478
397 5M04 GDP 24.7148
398 1YQT ADP 24.8649
399 1TQ4 GDP 25.0951
400 3BC1 GNP 25.1282
401 3RWO GDP 25.4054
402 1FQJ ALF 25.4054
403 1FQK GDP 25.4054
404 1FQJ GDP 25.4054
405 1FQK ALF 25.4054
406 2CJW GDP 25.5208
407 1Z0F GDP 25.6983
408 2C9O ADP 25.8555
409 4NCN GTP 25.9459
410 1OIX GDP 26.178
411 3T12 GDP ALF 27.027
412 3T1O GDP 27.027
413 5KSP GDP 27.3684
414 1GUA GNP 27.5449
415 1WF3 GNP 27.5676
416 1F2U ATP 27.7027
417 1VG8 GNP 28.5024
418 1VG0 GDP 28.5024
419 4B47 GDP 28.5171
420 1Z06 GNP 28.6486
421 2G77 GDP 28.6486
422 2G77 AF3 28.6486
423 2QZ4 ADP 28.6486
424 1TU3 GNP 28.655
425 3ZS9 ADP ALF 28.9474
426 2HV8 GTP 29.0698
427 2A9K GDP 29.1892
428 2HT6 GDP 29.3103
429 1Z0A GDP 29.3103
430 1EK0 GNP 29.4118
431 1R2Q GNP 29.4118
432 3Q72 GNP 29.5181
433 1D5C GDP 29.6296
434 3QBT GNP 29.8851
435 2D7C GTP 29.9401
436 1E96 GTP 30.2083
437 4C4P GNP 30.2703
438 2F9L GDP 30.2703
439 2A5J GDP 30.2703
440 1OIV GDP 30.2703
441 1ZC3 GNP 30.2857
442 3SBD GNP 30.4813
443 4HDO GNP 30.5389
444 1KAO GDP 30.5389
445 1YVD GNP 30.7692
446 3CX8 GSP 30.8108
447 3AB3 GDP 30.8108
448 3MJH GTP 30.9524
449 1KMQ GNP 30.9783
450 1YZQ GNP 31.1765
451 2BME GNP 31.1828
452 1MH1 GNP 31.1828
453 5KUT GDP 31.2169
454 1YZN GNP 31.3514
455 2BCG GDP 31.3514
456 2WJG GDP 31.3514
457 5IRC GDP 31.3514
458 1KK1 GNP 31.5589
459 4DCT GDP 31.8919
460 3RAB GNP 31.9527
461 1U8Z GDP 32.1429
462 1Z0J GTP 32.2034
463 1VG1 GDP 32.4324
464 1VG9 GDP 32.4324
465 1HE1 GDP 32.9545
466 1HE1 AF3 32.9545
467 1GWN GTP 32.973
468 1M7B GTP 33.1522
469 2V7Q ATP 33.3333
470 2V7Q ADP 33.3333
471 3M1I GTP 33.5135
472 4NON GDP 33.5135
473 5XC5 GTP 33.5227
474 1DCP HBI 33.6538
475 1Z0K GTP 33.7209
476 1Z2A GDP 33.9286
477 5BXQ GDP 34.0541
478 5UWP GNP 34.0541
479 4HAT GNP 34.0541
480 5UWO GNP 34.0541
481 5UWU GNP 34.0541
482 5DIF GNP 34.0541
483 5UWW GNP 34.0541
484 5UWT GNP 34.0541
485 5UWI GNP 34.0541
486 5UWR GNP 34.0541
487 5UWJ GNP 34.0541
488 5UWH GNP 34.0541
489 6CIT GNP 34.0541
490 5DHF GNP 34.0541
491 5UWS GNP 34.0541
492 1IBR GNP 34.0541
493 3GJ8 GDP 34.0541
494 3GJ5 GDP 34.0541
495 3CH5 GDP 34.0541
496 3GJ3 GDP 34.0541
497 5DI9 GNP 34.0541
498 3GJ4 GDP 34.0541
499 3GJ0 GDP 34.0541
500 3GJ7 GDP 34.0541
501 5Z2M GTP 34.0909
502 3T5G GDP 34.2541
503 2WJH GDP 34.3373
504 2WJH FLC 34.3373
505 1KY3 GDP 34.6154
506 1WA5 GTP 36.3636
507 1NRJ GTP 36.7568
508 5UQW GDP 37.037
509 1G16 GDP 37.0588
510 3PQC GDP 37.2973
511 5TB5 GDP 37.8378
512 5TAR GDP 37.8378
513 5OCG GNP 38.3784
514 5YV5 ADP 38.8889
515 2GCN GDP 39.3035
516 6FA4 GNP 39.8844
517 1OW3 GDP 39.8964
518 2GJ8 ALF GDP 40.1163
519 2C5L GTP 40.4624
520 5UWQ GNP 40.9091
521 4K81 GTP 40.9357
522 1LFD GNP 41.3174
523 6BVJ GNP 41.3174
524 5O2T GSP 41.4201
525 2UZI GTP 41.5663
526 3DDC GNP 41.5663
527 1CLU DBG 41.5663
528 3KUD GDP 41.5663
529 1WQ1 GDP 41.5663
530 1NVV GNP 41.5663
531 1WQ1 AF3 41.5663
532 5HPY GDP 41.6216
533 4D0N GDP 41.6216
534 5O74 GDP 41.6667
535 1S8F GDP 41.8079
536 6D5E GNP 41.9162
537 6D55 GNP 41.9162
538 6D5J GNP 41.9162
539 6D5H GNP 41.9162
540 6BVI GNP 41.9162
541 6BVL GNP 41.9162
542 6BVK GNP 41.9162
543 6D5L GNP 41.9162
544 6D56 GNP 41.9162
545 6D59 GNP 41.9162
546 6BVM GNP 41.9162
547 6D5G GNP 41.9162
548 6D5V GNP 41.9162
549 6D5M GNP 41.9162
550 5WLB GNP 42.1687
551 1CXZ GSP 42.3077
552 1Z08 GNP 42.3529
553 1TX4 ALF GDP 42.3729
554 2GCO GNP 42.7027
555 5YT0 GDP 42.8571
556 2FFQ GSP 45.0292
557 6BSX GDP 46.0674
558 6BSX E7S 46.0674
559 2FH5 GTP 47.5676
560 1M2O GNP 48.1081
561 2QTV GNP 49.7006
Pocket No.: 2; Query (leader) PDB : 5DI3; Ligand: GNP; Similar sites found with APoc: 37
This union binding pocket(no: 2) in the query (biounit: 5di3.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 1RTF BEN 3.1746
2 1J1R ADE 3.24324
3 2ZWS PLM 4.32432
4 4GDX GLU 4.32432
5 6B74 BEN 4.86486
6 2BO4 FLC 4.86486
7 1A0J BEN 4.93274
8 5YB7 ORN 5
9 5YB7 FAD 5
10 6AR9 3L4 5.40541
11 4NZ6 DGL 5.40541
12 3KIF GDL 5.66038
13 1M0S CIT 5.70342
14 3GDN HBX 5.94595
15 5MEX PAP 6.21118
16 1CM0 COA 6.54762
17 1LK7 DER 6.55022
18 4PVR ASP 7.02703
19 2GWH A3P 7.02703
20 5AHO TLA 7.56757
21 4IV9 FAD 8.36502
22 1Y4Z PCI 8.44444
23 6GR0 F8W 8.62069
24 2ZUX RAM 8.64865
25 3CV2 OXL 9.18919
26 5A7Y SAH 9.5057
27 2PKA BEN 10
28 6A6A DAL 12.4324
29 5AOG IAC 13.6882
30 3AB4 THR 14.0449
31 1I0B PEL 16.7568
32 1P9B HDA 17.2973
33 2VWT PYR 17.8378
34 1APZ ASP 18.5185
35 2HK9 ATR 20
36 6C0B MLI 25.4054
37 1FIW PBZ 31.8182
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