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Receptor
PDB id Resolution Class Description Source Keywords
5CX6 2.1 Å EC: 7.-.-.- CRYSTAL STRUCTURE OF THOSEA ASIGNA VIRUS RNA-DEPENDENT RNA P (RDRP) COMPLEXED WITH CDP THOSEA ASIGNA VIRUS RDRP COMPLEX CDP TRANSFERASE
Ref.: THE STRUCTURE OF THE RNA-DEPENDENT RNA POLYMERASE O PERMUTOTETRAVIRUS SUGGESTS A LINK BETWEEN PRIMER-DE AND PRIMER-INDEPENDENT POLYMERASES. PLOS PATHOG. V. 11 05265 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SO4 A:701;
B:705;
A:702;
B:702;
B:703;
A:706;
B:701;
B:704;
A:707;
A:705;
A:704;
A:703;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
MG A:720;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
CDP B:713;
A:721;
Valid;
Valid;
none;
none;
submit data
403.176 C9 H15 N3 O11 P2 C1=CN...
GOL A:714;
A:713;
A:712;
A:709;
B:706;
A:717;
A:719;
B:709;
A:711;
A:708;
B:707;
B:712;
A:710;
B:710;
A:716;
B:708;
A:715;
B:711;
A:718;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5CX6 2.1 Å EC: 7.-.-.- CRYSTAL STRUCTURE OF THOSEA ASIGNA VIRUS RNA-DEPENDENT RNA P (RDRP) COMPLEXED WITH CDP THOSEA ASIGNA VIRUS RDRP COMPLEX CDP TRANSFERASE
Ref.: THE STRUCTURE OF THE RNA-DEPENDENT RNA POLYMERASE O PERMUTOTETRAVIRUS SUGGESTS A LINK BETWEEN PRIMER-DE AND PRIMER-INDEPENDENT POLYMERASES. PLOS PATHOG. V. 11 05265 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 293 families.
1 5CX6 - CDP C9 H15 N3 O11 P2 C1=CN(C(=O....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 250 families.
1 5CX6 - CDP C9 H15 N3 O11 P2 C1=CN(C(=O....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 204 families.
1 5CX6 - CDP C9 H15 N3 O11 P2 C1=CN(C(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: CDP; Similar ligands found: 91
No: Ligand ECFP6 Tc MDL keys Tc
1 CDP 1 1
2 CTP 0.895522 1
3 HF4 0.895522 1
4 CAR 0.787879 0.985507
5 C 0.787879 0.985507
6 C5P 0.787879 0.985507
7 7XL 0.77027 0.944444
8 C2G 0.74026 0.957747
9 CDC 0.725 0.82716
10 C5G 0.707317 0.944444
11 CDM 0.695122 0.894737
12 CXY 0.678571 0.944444
13 CTN 0.636364 0.857143
14 AR3 0.636364 0.857143
15 C C C C 0.623529 0.916667
16 1AA 0.619565 0.906667
17 C C 0.607143 0.929577
18 UDP 0.605263 0.942029
19 I5A 0.602941 0.816901
20 YYY 0.582278 0.90411
21 GCQ 0.560976 0.90411
22 C3P 0.56 0.942857
23 MCN 0.557692 0.819277
24 PMT 0.554455 0.85
25 91P 0.553398 0.851852
26 UTP 0.54321 0.942029
27 2AA 0.542857 0.693878
28 16B 0.538462 0.917808
29 CSV 0.536842 0.905405
30 CSQ 0.536842 0.905405
31 DCP 0.535714 0.90411
32 GTF 0.523256 0.90411
33 C2P 0.519481 0.957143
34 PCD 0.517857 0.781609
35 FN5 0.509434 0.871795
36 GPC 0.509091 0.819277
37 CSF 0.504587 0.871795
38 DKZ 0.5 0.746667
39 UNP 0.488372 0.915493
40 TKW 0.4875 0.971429
41 G C 0.481818 0.8375
42 5GW 0.477778 0.890411
43 5HM 0.47561 0.958333
44 A C A C 0.464912 0.835443
45 DC 0.463415 0.890411
46 DCM 0.463415 0.890411
47 U A C C 0.452174 0.846154
48 UPP 0.451613 0.888889
49 UDH 0.451613 0.844156
50 G8D 0.450549 0.907895
51 U 0.45 0.927536
52 U5P 0.45 0.927536
53 C5P SIA 0.447368 0.893333
54 URM 0.446809 0.876712
55 660 0.446809 0.876712
56 GDU 0.446809 0.888889
57 UFM 0.446809 0.888889
58 GUD 0.446809 0.888889
59 UPG 0.446809 0.888889
60 8OD 0.445652 0.855263
61 G G G C 0.444444 0.85
62 UPU 0.444444 0.887324
63 4GW 0.443299 0.866667
64 A G C C 0.440678 0.848101
65 DOC 0.439024 0.890411
66 M7G 0.43617 0.829268
67 UFG 0.43299 0.842105
68 UPF 0.43299 0.842105
69 U2F 0.43299 0.842105
70 2KH 0.431818 0.915493
71 G C C C 0.42623 0.860759
72 CG2 0.421053 0.873418
73 A U C C 0.420635 0.835443
74 G3N 0.42 0.890411
75 UDP UDP 0.418605 0.885714
76 UAD 0.418367 0.888889
77 UDX 0.418367 0.888889
78 44P 0.416667 0.902778
79 3UC 0.415842 0.842105
80 M7M 0.412371 0.797619
81 8GT 0.410526 0.907895
82 V12 0.41 0.75
83 UGB 0.41 0.901408
84 USQ 0.41 0.780488
85 UGA 0.41 0.901408
86 UP5 0.405405 0.857143
87 GEO 0.405063 0.783784
88 UDM 0.403846 0.864865
89 H6Y 0.402062 0.855263
90 NVG 0.401961 0.731707
91 CTP C C C C 0.4 0.915493
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5CX6; Ligand: CDP; Similar sites found with APoc: 712
This union binding pocket(no: 1) in the query (biounit: 5cx6.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 1UO4 PIH None
2 5NNT DPV None
3 1UO5 PIH None
4 1XXA ARG None
5 4QHP 32Q 0.992908
6 1D4D FAD 1.04895
7 3HAZ FAD 1.13475
8 3LN0 52B 1.1925
9 1V97 FAD 1.2766
10 2HKJ RDC 1.27932
11 2P1C GG3 1.28205
12 4MRP GSH 1.30293
13 2ZBA COA 1.30719
14 4DP3 NDP 1.31579
15 4DP3 MMV 1.31579
16 5AZC PGT 1.33333
17 1YQD NAP 1.36612
18 3GD4 FAD 1.36986
19 5N9T 8QQ 1.40056
20 3HNC TTP 1.41844
21 5I0H ADP BEF 1.41844
22 6C1R EFD 1.4218
23 3G4G D71 1.42518
24 1ZED PNP 1.44628
25 5WS9 ATP 1.47368
26 5GSN FAD 1.54525
27 3B9Z CO2 1.54639
28 1Q9I FAD 1.57618
29 1Q9I TEO 1.57618
30 1E8G FAD 1.60714
31 1E8G FCR 1.60714
32 3VCY UD1 1.62791
33 3WCA FPS 1.64384
34 5AE2 FAD 1.70213
35 5AE2 FYC 1.70213
36 4RKK GLC GLC GLC GLC GLC GLC 1.80723
37 4N70 2HX 1.82927
38 3FPZ AHZ 1.84049
39 2WR1 NAG 1.84397
40 4P8K FAD 1.875
41 4P8K 38C 1.875
42 5K7K 6RJ 1.88679
43 2BIF BOG 1.91898
44 1F0X FAD 1.92644
45 5G57 6M5 1.94444
46 5JOG 6LT 1.94553
47 5UQK U2F 1.97133
48 4OOE FOM 1.9802
49 4OOE NDP 1.9802
50 1GZ4 ATP 1.99637
51 5AB1 BCD TA5 HP6 MAN 2
52 2XXP DSL 2.01005
53 1UDY FAD 2.0202
54 1UDY CS8 2.0202
55 4NKW PLO 2.02429
56 2R0N TGC 2.03046
57 5A9A UTP 2.05761
58 5XQL C2E 2.06186
59 3BP1 GUN 2.06897
60 5V13 JH3 2.08333
61 1X0P FAD 2.0979
62 3C6K SPD 2.09974
63 3C6K MTA 2.09974
64 3G58 988 2.09974
65 4QO5 NAG 2.11132
66 3PB9 1BN 2.12121
67 4NMC FAD 2.12766
68 4NMC 2OP 2.12766
69 4XOE KGM 2.15054
70 1LVL FAD 2.18341
71 2GOU FMN 2.19178
72 4USR FAD 2.21607
73 5JAQ NAI 2.21675
74 1N83 CLR 2.22222
75 1XAJ NAD 2.25989
76 1XAJ CRB 2.25989
77 4XRZ SI6 2.2695
78 3DLG GWE 2.27273
79 1ZSQ PIB 2.27273
80 6FNU FAD 2.27273
81 5LX9 OLB 2.28013
82 5LJ0 6XX 2.30769
83 3OJO NAD 2.32019
84 2AF6 BRU 2.32558
85 5FFF NAP 2.33463
86 4Q9N NAI 2.34899
87 4L1F COS 2.34987
88 4Y9J UCC 2.36088
89 4FL3 ANP 2.3622
90 3WYJ H78 2.37154
91 2Q1H AS4 2.4
92 1PJS NAD 2.407
93 5A8E XTK 2.41135
94 2AQX ATP 2.42215
95 3CH6 311 2.44755
96 3CH6 NAP 2.44755
97 1PCA CIT 2.48139
98 2BJK NAD 2.51938
99 1PZL MYR 2.53165
100 4K26 SFF 2.53623
101 2PD4 DCN 2.54545
102 2PD4 NAD 2.54545
103 3UOY FAD 2.56881
104 3UOY NAP 2.56881
105 4QBK 3NZ 2.57732
106 2RL1 UD1 2.59434
107 2YNC YNC 2.60417
108 5DCH 1YO 2.60417
109 5M37 9SZ 2.6087
110 5M36 9SZ 2.62009
111 5G3Y ADP 2.65487
112 5WKC FAD 2.65879
113 4W4S B29 2.66667
114 4Z87 GDP 2.69504
115 4CDN FO1 2.6971
116 4CDN FAD 2.6971
117 4UWJ MYA 2.7027
118 4UWJ 7L5 2.7027
119 2X5W K2B 2.72727
120 1N1G BCP 2.73224
121 1GNI OLA 2.73504
122 1FIQ FAD 2.73973
123 4ZBR DIF 2.74443
124 4ZBR NPS 2.74443
125 4COL DTP 2.76498
126 1FUR MLT 2.78373
127 4X7G 3Y8 2.78884
128 5OLK DTP 2.7907
129 3PPM JG1 2.79232
130 5V3Y 5V8 2.7972
131 1WG8 SAM 2.80702
132 2WPF WPF 2.82828
133 2WPF FAD 2.82828
134 3B6O TMP 2.83401
135 2E7Z MGD 2.83688
136 3AQT RCO 2.85714
137 6D6Y SAH 2.86807
138 1MVN PCO 2.87081
139 1MVN FMN 2.87081
140 2EIX FAD 2.88066
141 1GA8 DEL 2.89389
142 1GA8 UPF 2.89389
143 1KUV CA5 2.89855
144 4Q86 AMP 2.90102
145 2UUU PL3 2.91096
146 2UUU FAD 2.91096
147 3G6K FAD 2.92208
148 3G6K POP 2.92208
149 3V66 D3A 2.94118
150 6BKA FMN 2.94118
151 2JHP SAH 2.95031
152 6CAY ERG 2.95858
153 3KC1 2T6 2.96736
154 5W99 A1V 2.97619
155 4YSW FAD 2.97872
156 4YSW NAI 2.97872
157 2XVF FAD 2.97872
158 2C49 ANP 2.98013
159 4RGQ NDP 2.98913
160 5WA0 MSS 3.0137
161 3GKJ HC3 3.01724
162 1TT8 PHB 3.04878
163 3SWG EPZ 3.05882
164 2FV5 541 3.06513
165 1NP7 FAD 3.06748
166 3UA1 08Y 3.08008
167 5TVJ 7LF 3.08057
168 5TVJ COA 3.08057
169 4EI7 GDP 3.08483
170 5HCV 60R 3.11284
171 1LVK MNT BEF 3.12057
172 5FAL SKT 3.125
173 5FAL COA 3.125
174 1KPG 16A 3.13589
175 3ZPG 5GP 3.14136
176 5IF4 6AK 3.14465
177 4GU5 FAD 3.15399
178 2A3I C0R 3.16206
179 1WUR 8DG 3.18182
180 2YOO K2B 3.1941
181 2GBB CIT 3.20513
182 5D9J 0N8 3.20856
183 3H8G BES 3.21932
184 5J5Z FAD 3.22581
185 3FB4 AP5 3.24074
186 5KF6 TFB 3.26241
187 5KF6 FAD 3.26241
188 1YKD CMP 3.26633
189 1Q7E MET 3.27103
190 5LOF 70R 3.28185
191 4USF 6UI 3.28947
192 3T6E UQ9 3.2967
193 3T6E MQ9 3.2967
194 2ZKJ ADP 3.29949
195 1UAY ADN 3.30579
196 2H7C COA 3.32103
197 6EKZ SNP 3.35366
198 1G2O IMH 3.35821
199 2IZ1 RES 3.37553
200 1ZOA 140 3.38266
201 1XSE NDP 3.38983
202 6F7L FAD 3.39367
203 2Q0D ATP 3.39943
204 4WUJ FMN 3.40136
205 2NP9 YE1 3.40909
206 5DUF G7A 3.42205
207 5X40 ACP 3.42466
208 5OSW DIU 3.43053
209 5K7H IVC 3.4632
210 4PYW ACE THR THR ALA ILE NH2 3.46535
211 4RDH AMP 3.47222
212 5XJ7 87O 3.48259
213 5X8Q 82R 3.48837
214 3RDE OYP 3.4904
215 1SBR VIB 3.5
216 5NTW 98N 3.50195
217 3TJH SER PRO LEU ASP SER LEU TRP TRP ILE 3.53982
218 6DVH FMN 3.5533
219 1NHZ 486 3.57143
220 1IYK MYA 3.57143
221 5G5W R8C 3.57143
222 6BR8 6OU 3.57143
223 1EYN 2AN 3.57995
224 4UA3 COA 3.60825
225 5ZYN FAD 3.60934
226 5GUE GGS 3.62538
227 5WRJ A3P 3.63036
228 6FQZ 6PG 3.63248
229 3NRZ FAD 3.65854
230 2YPO PHE 3.67965
231 4NU0 AP5 3.68664
232 3FUU ADN 3.69004
233 6GG9 FMN 3.7037
234 4UMJ BFQ 3.71622
235 1ICP FMN 3.7234
236 6CHP F0Y 3.72671
237 4CNE SAH 3.74532
238 1Y8Q ATP 3.75723
239 1EX7 5GP 3.76344
240 4U0S ADP 3.77907
241 3SM2 478 3.78788
242 1IID NHM 3.79147
243 6CC0 EWM 3.79747
244 5ZKC 3C0 3.80048
245 1RX0 2MC 3.81679
246 5N5U 7N8 3.82166
247 4P86 5GP 3.82514
248 2FT0 ACO 3.82979
249 1EU1 MGD 3.82979
250 4OKZ 3E9 3.83562
251 2UW1 GVM 3.84615
252 1N4H REA 3.861
253 3OJF NDP 3.89105
254 3OJF IMJ 3.89105
255 4Q5M ROC 3.94089
256 1W6U HXC 3.97351
257 2HSA FMN 3.9801
258 3KRO IPE 4.0146
259 3KRO DST 4.0146
260 1XMU ROF 4.0201
261 1XM4 PIL 4.0201
262 1XMY ROL 4.0201
263 2XMY CDK 4.02685
264 1OPK MYR 4.0404
265 3MJY IJZ 4.04624
266 3MJY FMN 4.04624
267 1EYQ NAR 4.05405
268 5W7U GY8 4.06091
269 1AKY AP5 4.09091
270 4GYW UDP 4.11348
271 5BNW 12V 4.11348
272 3WHB DCC 4.12371
273 1I0S FMN 4.14201
274 3ZKI WZV 4.14508
275 3K8D KDO 4.16667
276 1V59 NAD 4.1841
277 4QVX 3CQ 4.19162
278 3A3B RBF 4.21053
279 3A3B FMN 4.21053
280 6A0S NDP 4.21687
281 6A0S HSE 4.21687
282 2FP2 TSA 4.21687
283 5JCA FAD 4.22535
284 3W54 RNB 4.25532
285 2C9E PID 4.25532
286 5MWY YNU 4.2623
287 3UR0 SVR 4.27184
288 3B6C SDN 4.2735
289 5MJI 7O6 4.28016
290 4XU6 TDA 4.28571
291 6CS8 F9Y 4.29043
292 4ZAL FNR 4.30622
293 4ZAL 4LR 4.30622
294 5HGR 45D 4.30769
295 4KOT CE3 4.32099
296 2OKL BB2 4.32432
297 3F5K CE5 4.3659
298 4LHD GLY 4.39716
299 2Z7I 742 4.41176
300 4XO8 KGM 4.43038
301 4EOX 0S5 4.4335
302 4QWT ACD 4.45402
303 2H8Z FMN 4.45682
304 2H8Z 8CM 4.45682
305 3GZ9 D32 4.46097
306 4ITU 1HS 4.46097
307 4ITU NAI 4.46097
308 1WS1 BB2 4.48718
309 5K52 OCD 4.5283
310 1PZO CBT 4.56274
311 3RC1 NAP 4.57143
312 3RC1 TLO 4.57143
313 2WH8 II2 4.60048
314 4E28 9MZ 4.61538
315 4E28 0MZ 4.61538
316 1SJD NPG 4.61957
317 4FBL SPD 4.62633
318 3IIS PID 4.63576
319 6H8S FSZ 4.65116
320 3A28 NAD 4.65116
321 4FC7 NAP 4.69314
322 4FC7 COA 4.69314
323 1XDY MTE 4.69799
324 1BUC CAA 4.69974
325 4D79 ATP 4.71014
326 5G3N X28 4.72441
327 4I4Z 2NE 4.72727
328 1R6N 434 4.73934
329 3UMV FAD 4.74308
330 4ZOH FAD 4.7619
331 4UDB CV7 4.77941
332 5XFV FMN 4.79042
333 5C1M CLR 4.8
334 1LL2 UPG 4.8048
335 1I0B PEL 4.81928
336 4ELG 52J 4.81928
337 4ELG 52I 4.81928
338 1OVD FMN 4.82315
339 1OVD ORO 4.82315
340 4IGH ORO 4.83871
341 4IGH FMN 4.83871
342 4IGH 1EA 4.83871
343 4URF NAD 4.83871
344 5NM7 GLY 4.88722
345 1I36 NAP 4.92424
346 1P1M MET 4.92611
347 1RP0 AHZ 4.92958
348 2GN4 UD1 4.94186
349 5K53 STE 4.96183
350 5IM3 DTP 4.96454
351 6AYH C3G 4.97512
352 1A8R GTP 4.97738
353 5X80 SAL 5
354 3E8T UQ8 5
355 5OJI NAP 5
356 6AYI C3G 5.02513
357 1N46 PFA 5.03876
358 2ZFZ ARG 5.06329
359 5IKH 6BW 5.09091
360 1YUC EPH 5.09804
361 1FCZ 156 5.10638
362 5EY0 GTP 5.10949
363 4LXQ TYD 5.10949
364 4LXQ FON 5.10949
365 3H8V ATP 5.13699
366 5UGW GSH 5.14286
367 4MO2 FDA 5.16304
368 4MO2 FAD 5.16304
369 2J8C U10 5.21173
370 5B4B LP5 5.24194
371 4DXJ 0M9 5.24862
372 2OBD PCW 5.2521
373 6CEN ACE GLY VAL NLE ARG ILE NH2 5.26316
374 4IGQ THR M3L GLN 5.27778
375 2PR5 FMN 5.30303
376 1ZDU P3A 5.30612
377 5UNJ RJW 5.30612
378 3WQM B29 5.31561
379 1RQJ RIS 5.35117
380 4DW4 U5P 5.38922
381 5UWA 8ND 5.41872
382 1OW4 2AN 5.42636
383 1FCH TYR GLN SER LYS LEU 5.43478
384 4FGC PQ0 5.45455
385 3ABA FLI 5.45906
386 1E6E FAD 5.46875
387 1SQL GUN 5.47945
388 5CYV WCA 5.47945
389 5AHS COA 5.48628
390 1KQB BEZ 5.52995
391 1YKI NFZ 5.52995
392 1KQB FMN 5.52995
393 1YKI FMN 5.52995
394 1ICV FMN 5.52995
395 1YYE 196 5.59701
396 1OQC FAD 5.6
397 4E2J MOF 5.6
398 3GN8 DEX 5.62249
399 3GWL FAD 5.66038
400 3KXC PLM 5.6701
401 5EHR 5OD 5.70342
402 1J3I NDP 5.71429
403 4JZX 476 5.80111
404 4XDA ADP 5.82524
405 1M2Z BOG 5.83658
406 2I0G I0G 5.83658
407 3UWB BB2 5.84416
408 1RL4 BL5 5.85106
409 1RL4 BRR 5.85106
410 3BQD DAY 5.88235
411 4P6X HCY 5.88235
412 6BYM HC3 5.91133
413 2E9L PLM 5.97015
414 2E9L OLA 5.97015
415 2E9L BGC 5.97015
416 1LQY BB2 5.97826
417 1JR8 FAD 5.98291
418 4D7M TDC 5.99078
419 3V49 PK0 6.01504
420 3KMZ EQO 6.01504
421 1N62 FAD 6.0241
422 1N62 MCN 6.0241
423 4POJ 2VP 6.06061
424 4M8E 29V 6.06061
425 2AZC 3TL 6.06061
426 2VBQ BSJ 6.06061
427 2GAG NAD 6.06061
428 5GM1 SAH 6.06061
429 4GBD MCF 6.11354
430 4BR5 ANP 6.12691
431 4II2 ATP 6.13497
432 1V7Z CRN 6.15385
433 2D5Z L35 6.16438
434 5LWY OLB 6.16438
435 1H9G COA MYR 6.17284
436 1YOK P6L 6.25
437 2AX9 BHM 6.25
438 2D37 NAD 6.25
439 2D37 FMN 6.25
440 4DR9 BB2 6.25
441 5MW4 5JU 6.28743
442 3BEJ MUF 6.30252
443 3ZLR X0B 6.32911
444 2HHP FLC 6.41509
445 4TXJ THM 6.41892
446 4R38 RBF 6.42857
447 3OKI OKI 6.43777
448 4UUU SAM 6.45161
449 4WW8 VD9 6.46388
450 3WR7 COA 6.47059
451 3MBG FAD 6.47482
452 4B5P ACO 6.5
453 5K13 6Q7 6.50407
454 6FS0 E4W 6.51163
455 3PMD 11A 6.53595
456 2Q2Y MKR 6.53951
457 2Q2Y ADP 6.53951
458 2E2R 2OH 6.55738
459 2ASF CIT 6.56934
460 6A5Y 9CR 6.57895
461 3RUV ANP 6.62983
462 4OIV XX9 6.63717
463 2AK3 AMP 6.63717
464 1DEK DGP 6.639
465 1S17 GNR 6.66667
466 1ZQ9 SAM 6.66667
467 1NNU NAD 6.66667
468 1NNU TCT 6.66667
469 1V35 NAI 6.68693
470 3EMY IVA VAL VAL STA ALA STA 6.68693
471 4FDV 0UK 6.69856
472 4KBY C2E 6.76329
473 3SFI 3SF 6.77966
474 1RJW ETF 6.78466
475 5V4R MGT 6.79012
476 3MPI GRA 6.80101
477 1Q1Y BB2 6.80628
478 1DKF OLA 6.80851
479 4C2X NHW 6.82927
480 5MZY 8EZ 6.85484
481 3RNM FAD 6.89655
482 3ZW2 NAG GAL FUC 6.89655
483 3ZW2 GLA NAG GAL FUC 6.89655
484 4CQM NAP 6.96721
485 4H6U ACO 7
486 3T50 FMN 7.03125
487 4NKT 2KH 7.03812
488 1ZPD CIT 7.04225
489 5C9J DAO 7.07071
490 5U98 1KX 7.07071
491 4M8X KGQ 7.07071
492 5C9J STE 7.07071
493 1U3D FAD 7.07269
494 5D1R 56S 7.11297
495 1XAP TTB 7.11611
496 6AOV SIA GAL NAG GAL NAG 7.12074
497 5Z1N PEF 7.14286
498 2UXI G50 7.14286
499 5F1R 42O 7.173
500 3O55 FAD 7.2
501 2HJ3 FAD 7.2
502 1QG6 NAD 7.27969
503 1QG6 TCL 7.27969
504 1USF FMN 7.30337
505 1N9L FMN 7.33945
506 2QZO KN1 7.36434
507 4F07 FAD 7.36842
508 3HRD FAD 7.5
509 1KQN NAD 7.52688
510 5E5U MLT 7.53769
511 3TL1 JRO 7.54717
512 3ET1 ET1 7.56014
513 4RJD TFP 7.57576
514 4JE7 BB2 7.61421
515 2EWM NAD 7.63052
516 1K7L 544 7.63889
517 3WDM ADN 7.66284
518 5KHD C2E 7.69231
519 2Z6D FMN 7.69231
520 3SP6 IL2 7.7193
521 3QKD HI0 7.73481
522 5EYP GTP 7.76053
523 4PGK Y69 7.78689
524 3Q8G PEE 7.8125
525 3ANP DAO 7.84314
526 3ANP DCC 7.84314
527 2WSI FAD 7.84314
528 4IS0 1R4 7.88382
529 2YJD YJD 7.91667
530 3KDU NKS 7.94224
531 3UYW TAU 7.94393
532 5H94 LYS MET ASN THR GLN PHE THR ALA VAL 8
533 5MTE BB2 8.0292
534 4RPO T6C 8.07175
535 5G3L SIA 8.08081
536 5T2Z 017 8.08081
537 4NJS G08 8.08081
538 3GGU 017 8.08081
539 3S43 478 8.08081
540 2FXD DR7 8.08081
541 2QZT PLM 8.10811
542 3O01 DXC 8.11688
543 5LPA 71R 8.14815
544 5LPA ATP 8.14815
545 2NPA MMB 8.14815
546 3X1M COA 8.1761
547 3D04 SAK 8.1761
548 2Q3O FMN 8.18414
549 3G5K BB2 8.19672
550 2O07 SPD 8.22368
551 2O07 MTA 8.22368
552 3FEI CTM 8.2397
553 2P54 735 8.2397
554 1NU4 MLA 8.24742
555 3B1M KRC 8.48057
556 2HFP NSI 8.51064
557 5W7B MYR 8.51064
558 4HEE 14R 8.51064
559 5EEH P9P 8.51064
560 5EEH SAH 8.51064
561 3ET3 ET1 8.56164
562 4CBU ATP 8.66142
563 2P4Y C03 8.66426
564 1TDU CB3 8.67924
565 4B7P 9UN 8.69565
566 4EES FMN 8.69565
567 5F8F SFG 8.75332
568 3RLF MAL 8.75486
569 4MKF AP5 8.75576
570 5SVV FMN 8.75912
571 3T03 3T0 8.80282
572 1RDT 570 8.80282
573 1RDT L79 8.80282
574 3H0A D30 8.82353
575 1FM9 9CR 8.82353
576 1FM9 570 8.82353
577 5TWO 7MV 8.82353
578 3H0A 9RA 8.82353
579 4RLT FSE 8.84354
580 3G9E RO7 8.85609
581 2VWA PTY 8.91089
582 4YT4 FE9 9.06667
583 5HI5 63Q 9.09091
584 5LXT 7AK 9.09091
585 5LXT GDP 9.09091
586 3MWS 017 9.09091
587 3E3U NVC 9.13706
588 2G86 UMP 9.17722
589 5EW9 5VC 9.22509
590 1NBU PH2 9.2437
591 5JF2 SF7 9.31373
592 2PT9 S4M 9.34579
593 2ZCQ B65 9.55631
594 3P9T TCL 9.58904
595 2Y31 SMQ 9.73783
596 1GUX ASP LEU TYR CYS TYR GLU GLN LEU ASN 9.86842
597 2R40 20E 9.88593
598 4W97 UCA 10
599 1BWO LPC 10
600 5NI5 8YB 10.0694
601 1WPY BTN 10.2128
602 5CFT 51G 10.2703
603 5CFT APC 10.2703
604 3COW 52H 10.299
605 4RC8 STE 10.3604
606 1FFU FAD 10.4294
607 6GL8 F3Q 10.4651
608 4LSJ LSJ 10.4651
609 1D5Z ACE ALC ARG ALA ODA SER LEU NH2 10.4972
610 3D72 FAD 10.7383
611 4BNU 9KQ 10.7807
612 1XVB BHL 10.8159
613 6ESN BWE 10.8614
614 4NG2 OHN 10.8696
615 5APK 76E 10.9434
616 1JQD SAH 10.9589
617 1I8T FAD 11.1717
618 1LN1 DLP 11.215
619 3M6P BB2 11.399
620 1T3Q FAD 11.4583
621 6FIV 3TL 11.5044
622 4WQ2 3SU 11.5607
623 1SR7 MOF 11.583
624 1DB1 VDX 11.583
625 4OAR 2S0 11.6279
626 6D6L FY4 11.7647
627 5L95 AMP 11.828
628 2A1L PCW 11.8519
629 6B5Q PPI CZS 2KY MLY 1XY 12
630 1IDA 0PO 12.1212
631 5A4W QCT 12.2642
632 4RHP PEF 12.3404
633 2PEH LYS ARG LYS SER ARG TRP ASP GLU THR PRO 12.381
634 5Y6Q MCN 12.4242
635 1AE1 NAP 12.4542
636 2F5Z FAD 12.5
637 1DMH LIO 12.5402
638 1T27 PCW 12.5461
639 3KP6 SAL 12.5828
640 5TBM 79A 12.8205
641 4XRQ 1B0 12.987
642 2BS5 BGC GAL FUC 13.3333
643 1BII ARG GLY PRO GLY ARG ALA PHE VAL THR ILE 13.4454
644 2XB8 XNW 13.6986
645 2H29 DND 13.7566
646 5CHR 4NC 13.8686
647 5IVX ARG GLY PRO GLY ARG ALA PHE VAL THR ILE 14
648 1ZT1 PHE GLU ALA ASN GLY ASN LEU ILE 14
649 3SCM LGN 14.1414
650 3QUZ QUV 14.1414
651 3G08 FEE 14.1414
652 3RUG DB6 14.1414
653 1MHC FME TYR PHE ILE ASN ILE LEU THR LEU 14.1414
654 1LEK GLU GLN TYR LYS PHE TYR SER VAL 14.1414
655 4H07 IPH 14.2857
656 4NAT ADP 14.375
657 4NAT 2W5 14.375
658 5UC1 486 14.4144
659 2A06 SMA 14.5161
660 3GST GPR 14.7465
661 1WA5 GTP 14.7727
662 6BKL EU7 14.8148
663 6BKL RIM 14.8148
664 6BOC RIM 14.8148
665 2Y69 CHD 14.8649
666 3FAL REA 15.0376
667 2DYR TGL 15.0685
668 2DYS TGL 15.0685
669 5W97 CHD 15.0685
670 5Z84 CHD 15.0685
671 2DYR PGV 15.0685
672 5ZCO PGV 15.0685
673 5Z84 PGV 15.0685
674 5ZCO TGL 15.0685
675 5ZCO CHD 15.0685
676 2DYS PGV 15.0685
677 5Z84 TGL 15.0685
678 1GHE ACO 15.2542
679 4BKS X6C 15.3846
680 3EEL 53T 15.4185
681 1TMX HGX 15.6997
682 1B74 DGN 15.748
683 3HUJ AGH 15.8451
684 2PRG BRL 15.9091
685 4MGB XDH 16.0784
686 4MG8 27J 16.0784
687 4TUZ 36J 16.0784
688 5AAV GW5 16.2698
689 2BJ4 OHT 16.2698
690 4TV1 36M 16.3347
691 4WO4 JLS 16.4234
692 2QE4 JJ3 16.5323
693 5U1M ACE LEU TYR ALA SER SER ASN PRO ALA PTR 17.1429
694 5XS3 VAL ARG SER ARG ARG CYS LEU ARG LEU 17.2161
695 1G27 BB1 17.2619
696 5OCA 9QZ 17.4603
697 4DOL PLM 17.5115
698 3RET PYR 17.8218
699 3RET SAL 17.8218
700 5N7O 69Y 18.0995
701 1VBO MAN MAN MAN 18.1208
702 5MWE TCE 18.5714
703 3S0E EOL 19.3277
704 2WCJ M21 20.5674
705 2FKW RG1 21.9512
706 4OGQ 3WM 22.5806
707 4OGQ 1O2 22.5806
708 1RV1 IMZ 24.7059
709 4V1T ADP 26.5625
710 4ZGM 32M 27.0492
711 3N7S 3N7 27.0833
712 3AD8 NAD 32.3232
Pocket No.: 2; Query (leader) PDB : 5CX6; Ligand: CDP; Similar sites found with APoc: 109
This union binding pocket(no: 2) in the query (biounit: 5cx6.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
1 4LY9 S6P 0.784929
2 4LY9 1YY 0.784929
3 2BRY FAD 1.00604
4 4I42 1HA 1.40351
5 2WPX ACO 1.47493
6 3IHG FAD 1.49533
7 3TDC 0EU 1.56028
8 3C3N FMN 1.60256
9 4D7E FAD 1.6317
10 2ZXG S23 1.70213
11 3GDN MXN 1.72745
12 4WNK 453 2.00669
13 4IPE ANP 2.12766
14 2RKV ZBA 2.21729
15 2RKV COA 2.21729
16 3P0K FAD 2.25564
17 4EUE NAI 2.39234
18 5ZW7 FAD 2.48756
19 5W8Q BU4 2.5641
20 4YUW S4M 2.63158
21 4B4U NAP 2.64026
22 1T9D FAD 2.65879
23 2GZ3 NAP 2.73224
24 6MVU K4V 2.83688
25 4JDR FAD 2.95359
26 1N07 ADP 3.06748
27 1N07 FMN 3.06748
28 1HSK FAD 3.06748
29 1RM6 FAD 3.10559
30 2QTR NXX 3.1746
31 2GLX NDP 3.31325
32 4AUT FAD 3.4188
33 5G5G FAD 3.49345
34 4LAE 1VM 3.59281
35 4LAE NAP 3.59281
36 5I7S E9P 3.62319
37 5I7S NAD 3.62319
38 3HB5 E2B 3.66972
39 3DMH GMP 3.67454
40 3DMH SAM 3.67454
41 6BA2 7KM 3.72881
42 4NTO 1PW 3.86473
43 2RGO FAD 3.95387
44 5OJL TXP 4.02685
45 3ZOD HQE 4.18848
46 3ZOD FMN 4.18848
47 3UPY FOM 4.26966
48 5BQI 4UL 4.54545
49 5BQI GSH 4.54545
50 5TV6 PML 4.58333
51 1WP4 NDP 4.84429
52 2CVZ NDP 4.84429
53 2EV1 OLA 4.95496
54 4L9I 8PR 5.15873
55 1NTV ASN PHE ASP ASN PRO VAL TYR ARG LYS THR 5.26316
56 5KVM THR TYR PHE ALA VAL LEU MET VAL SER 5.26316
57 6F68 4EU 5.28455
58 6F68 GSH 5.28455
59 2Q4W FAD 5.34351
60 1JQ3 AAT 5.40541
61 5O42 NAD 5.47445
62 5O42 9JW 5.47445
63 5O42 BGC 5.47445
64 5UFS 1TA 5.64516
65 2DM6 IMN 5.70571
66 2DM6 NAP 5.70571
67 3O61 GDD 5.75916
68 5HGZ ACO 5.76132
69 1M2Z DEX 5.83658
70 2BL9 CP6 5.88235
71 2BL9 NDP 5.88235
72 3KMR EQN 6.01504
73 2A8Y MTA 6.2963
74 3WQQ NDP 6.55738
75 3WQQ IB3 6.55738
76 4QIJ 1HA 6.58683
77 4DPL NAP 6.96379
78 5WL1 CUY 7.07071
79 5L4L 7OX 7.23684
80 1USF NAP 7.30337
81 2I0K FAD 7.66488
82 6CIB ADP 7.69231
83 6CI7 ACP 7.69231
84 4IOK ADP 7.69231
85 1T0S BML 8.13953
86 3B82 NAD 8.21256
87 1U72 NDP 8.60215
88 1U72 MTX 8.60215
89 2E3N 6CM 8.62745
90 1F4G TP4 8.71212
91 3FUR Z12 8.82353
92 1AOE NDP 8.85417
93 1AOE GW3 8.85417
94 2PT9 2MH 9.34579
95 1U8Z GDP 9.52381
96 1FFU CDP 10.4294
97 2I7C AAT 10.6007
98 5LYH 7B8 10.8808
99 5Y6Q FAD 12.4242
100 4BQS K2Q 12.5
101 4BQS ADP 12.5
102 4G6I RS3 13.8095
103 5T9F TYR 14.0221
104 2QE0 NAP 14.3158
105 3NUG NAD 17.4089
106 3RMK BML 18.0723
107 5AX9 4KT 20.4545
108 3RV5 DXC 22.4719
109 4YDX TCE 23.8806
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