Receptor
PDB id Resolution Class Description Source Keywords
5CK5 2.4 Å NON-ENZYME: SIGNAL_HORMONE SIGNAL RECOGNITION PARTICLE RECEPTOR SRB-GDP-MG FROM CHAETOM THERMOPHILUM CHAETOMIUM THERMOPHILUM ARF-LIKE GTPASE PROTEIN TRANSLOCATION SIGNALING PROTEIN
Ref.: STRUCTURE AND SWITCH CYCLE OF SR BETA AS ANCESTRAL EUKARYOTIC GTPASE ASSOCIATED WITH SECRETORY MEMBRAN STRUCTURE V. 23 1838 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG A:402;
D:402;
B:402;
C:402;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
GDP D:401;
C:401;
B:401;
A:401;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5CK5 2.4 Å NON-ENZYME: SIGNAL_HORMONE SIGNAL RECOGNITION PARTICLE RECEPTOR SRB-GDP-MG FROM CHAETOM THERMOPHILUM CHAETOMIUM THERMOPHILUM ARF-LIKE GTPASE PROTEIN TRANSLOCATION SIGNALING PROTEIN
Ref.: STRUCTURE AND SWITCH CYCLE OF SR BETA AS ANCESTRAL EUKARYOTIC GTPASE ASSOCIATED WITH SECRETORY MEMBRAN STRUCTURE V. 23 1838 2015
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 301 families.
1 5CK4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5CK5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 221 families.
1 5CK4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5CK5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 181 families.
1 5CK4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5CK5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 168
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 9GM 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GKE 0.747253 0.961039
18 GDD 0.747253 0.961039
19 GDC 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GDR 0.72043 0.961039
26 GFB 0.72043 0.961039
27 GTG 0.72043 0.936709
28 G4P 0.715909 0.986486
29 6CK 0.712766 0.936709
30 G3A 0.712766 0.973684
31 GDP AF3 0.7 0.888889
32 GDP ALF 0.7 0.888889
33 ALF GDP 0.7 0.888889
34 YGP 0.698925 0.901235
35 JB2 0.697917 0.961039
36 GKD 0.697917 0.961039
37 GPD 0.690722 0.925
38 GDX 0.690722 0.973684
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 GDP 7MG 0.636364 0.911392
44 DGI 0.636364 0.923077
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 KB7 0.629214 0.82716
52 CG2 0.622642 0.936709
53 FEG 0.619048 0.879518
54 MGD 0.614679 0.891566
55 ZGP 0.613208 0.869048
56 GH3 0.612903 0.973333
57 3GP 0.611765 0.946667
58 MD1 0.607143 0.891566
59 PGD 0.59292 0.925
60 DGT 0.591398 0.923077
61 BGO 0.588785 0.924051
62 TPG 0.582609 0.840909
63 DBG 0.582609 0.948718
64 KBD 0.581633 0.82716
65 2GP 0.574713 0.96
66 FE9 0.570175 0.776596
67 GCP G 0.56 0.921053
68 KBJ 0.558824 0.797619
69 G A A A 0.553571 0.923077
70 A G 0.553571 0.935065
71 MGP 0.553191 0.961039
72 U A G G 0.548673 0.935065
73 G4M 0.548387 0.880952
74 6G0 0.547368 0.961039
75 G1R G1R 0.542373 0.924051
76 P2G 0.527473 0.883117
77 PGD O 0.525 0.850575
78 ADP 0.522222 0.92
79 R5I 0.520833 0.946667
80 R7I 0.520833 0.946667
81 GGM 0.517544 0.901235
82 DGP 0.516484 0.910256
83 DG 0.516484 0.910256
84 P1G 0.516129 0.871795
85 G U 0.513274 0.9
86 G1G 0.508475 0.925
87 IMP 0.505495 0.959459
88 AKW 0.504425 0.890244
89 G C 0.504348 0.9
90 GPC 0.491525 0.879518
91 G7M 0.483871 0.948052
92 6AD 0.479592 0.841463
93 ATP 0.473684 0.92
94 HEJ 0.473684 0.92
95 G2Q 0.471154 0.961039
96 AQP 0.46875 0.92
97 5FA 0.46875 0.92
98 GTA 0.468468 0.936709
99 7DD 0.468085 0.906667
100 G G G RPC 0.466102 0.875
101 SGP 0.463158 0.82716
102 01G 0.462963 0.902439
103 JSQ 0.459184 0.873418
104 HFD 0.459184 0.873418
105 AP5 0.457447 0.894737
106 B4P 0.457447 0.894737
107 A2D 0.456522 0.894737
108 6YZ 0.455446 0.896104
109 G G G C 0.455285 0.9125
110 ANP 0.454545 0.896104
111 5GP 5GP 0.454545 0.883117
112 ACQ 0.454545 0.896104
113 AT4 0.452632 0.884615
114 A G C C 0.451613 0.911392
115 APC G U 0.45082 0.886076
116 PRT 0.449541 0.959459
117 G U34 0.449153 0.888889
118 DG DG 0.448598 0.865854
119 ITT 0.447917 0.868421
120 BA3 0.446809 0.894737
121 35G 0.444444 0.933333
122 PCG 0.444444 0.933333
123 C2E 0.444444 0.921053
124 MGO 0.441176 0.864198
125 AN2 0.4375 0.907895
126 G C C C 0.4375 0.924051
127 NO7 0.436893 0.860759
128 M33 0.43299 0.883117
129 UCG 0.429688 0.911392
130 A G U 0.42963 0.888889
131 ACP 0.428571 0.896104
132 MGQ 0.424528 0.935897
133 7DT 0.424242 0.906667
134 APR 0.424242 0.894737
135 AR6 0.424242 0.894737
136 93A 0.42268 0.833333
137 A4P 0.420168 0.869048
138 AGS 0.42 0.873418
139 AD9 0.42 0.896104
140 G8D 0.42 0.875
141 SAP 0.42 0.873418
142 CA0 0.418367 0.896104
143 ATF 0.417476 0.884615
144 AGO 0.414634 0.888889
145 A G U U 0.414286 0.888889
146 KG4 0.414141 0.896104
147 NIA 0.413043 0.82716
148 MGV 0.412844 0.890244
149 T99 0.411765 0.884615
150 TAT 0.411765 0.884615
151 A1R 0.411215 0.839506
152 ADQ 0.411215 0.871795
153 RGT 0.410714 0.909091
154 CGP 0.409836 0.86747
155 HQG 0.409524 0.907895
156 C1Z 0.409091 0.986486
157 AMP 0.408602 0.893333
158 A 0.408602 0.893333
159 UP5 0.40678 0.873418
160 C2R 0.406593 0.906667
161 AMZ 0.406593 0.918919
162 JBT 0.405882 0.778947
163 A22 0.40566 0.907895
164 25L 0.405405 0.907895
165 ADX 0.40404 0.809524
166 8OD 0.401961 0.946667
167 4TC 0.4 0.851852
168 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5CK5; Ligand: GDP; Similar sites found with APoc: 342
This union binding pocket(no: 1) in the query (biounit: 5ck5.bio3) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 3TK1 GDP 2.21519
2 4LC1 GDP 2.21519
3 5FG3 GDP 2.21519
4 5W7Q GDP 2.21519
5 4LC1 GDP 2.21519
6 3MD0 GDP 2.21519
7 2C78 GNP 2.21519
8 3TK1 GDP 2.21519
9 1RYH GNP 2.46305
10 1WF3 GNP 2.65781
11 1MKY GDP 2.8481
12 1YRB GDP 3.05344
13 3EC1 GDP 3.16456
14 3WXM GTP 3.16456
15 3WYA GDP 3.22581
16 2RCN GDP 3.48101
17 2RCN GDP 3.48101
18 3PQC GDP 3.58974
19 1TQ4 GDP 4.43038
20 5W75 GDP 4.43038
21 5W75 GDP 4.43038
22 4NON GDP 4.61538
23 4NON GDP 4.61538
24 5M04 GDP 4.72222
25 4NCN GTP 4.74684
26 4TMZ GSP 4.74684
27 4J0Q GDP 4.74684
28 4J0Q GDP 4.74684
29 4J0Q GDP 4.74684
30 4J0Q GDP 4.74684
31 4J0Q GDP 4.74684
32 1Z2A GDP 4.7619
33 6S6D GTP 4.79233
34 6S6D GTP 4.79233
35 6G14 G4P 5.10204
36 6G14 G4P 5.10204
37 5WDR GNP 5.26316
38 5WDR GNP 5.26316
39 1G7S GDP 5.37975
40 3T5G GDP 5.52486
41 2ZEJ GDP 5.97826
42 2ZEJ GDP 5.97826
43 4RD0 GDP 6.01266
44 4HI0 GDP 6.03015
45 4HI0 GDP 6.03015
46 5YT0 GDP 6.32911
47 2J0V GDP 6.60377
48 4B47 GDP 6.64557
49 2CJW GDP 6.77083
50 2CJW GDP 6.77083
51 3CNL GNP 6.87023
52 2GJ8 ALF GDP 6.97674
53 2GJ8 ALF GDP 6.97674
54 5OEC GDP 7.10383
55 6FF8 GTP 7.18232
56 6FF8 GTP 7.18232
57 4DKX GDP 7.40741
58 4DKX GDP 7.40741
59 2HT6 GDP 7.47126
60 2HT6 GDP 7.47126
61 2QN6 GDP 7.52688
62 6HDU GTP 7.6087
63 6HDU GTP 7.6087
64 6HDU GTP 7.6087
65 6HDU GTP 7.6087
66 3RAB GNP 7.69231
67 1SVI GDP 7.69231
68 2XTZ GSP 7.91139
69 2A9K GDP 8.02139
70 1ZJ6 G3D 8.02139
71 1ZJ6 G3D 8.02139
72 1ZJ6 G3D 8.02139
73 4LHW GNP 8.04598
74 4LHW GNP 8.04598
75 4LHW GNP 8.04598
76 4LHW GNP 8.04598
77 1UAD GNP 8.08081
78 1UAD GNP 8.08081
79 2A5J GDP 8.37696
80 5LEF GTP 8.37696
81 5LEF GTP 8.37696
82 3RWO GDP 8.64865
83 3RWO GDP 8.64865
84 3RWO GDP 8.64865
85 3RWO GDP 8.64865
86 3DOE GTP 8.85417
87 5O74 GDP 8.88889
88 5O74 GDP 8.88889
89 5O74 GDP 8.88889
90 5O74 GDP 8.88889
91 5O74 GDP 8.88889
92 2Y8E GNP 8.93855
93 2Y8E GNP 8.93855
94 2Y8E GNP 8.93855
95 4ZI2 GNP 8.94737
96 4ZI2 GNP 8.94737
97 3NKV GNP 9.14286
98 3NKV GNP 9.14286
99 2FFQ GSP 9.35672
100 3CPJ GDP 9.41704
101 5KUT GDP 9.52381
102 5KUT GDP 9.52381
103 5KUT GDP 9.52381
104 1J2J GTP 9.63855
105 1O3Y GTP 9.63855
106 1O3Y GTP 9.63855
107 2J59 GTP 9.63855
108 2J59 GTP 9.63855
109 2J59 GTP 9.63855
110 2J59 GTP 9.63855
111 2J59 GTP 9.63855
112 2J59 GTP 9.63855
113 2BME GNP 9.67742
114 2BME GNP 9.67742
115 2BME GNP 9.67742
116 2BME GNP 9.67742
117 1S9D GDP 9.7561
118 1RE0 GDP 9.7561
119 1KY3 GDP 9.89011
120 1D8T GDP 10.1266
121 4P3Y GDP 10.1266
122 3U6B GDP 10.1266
123 3U6K GDP 10.1266
124 1D8T GDP 10.1266
125 5JBQ GDP 10.1266
126 3U6B GDP 10.1266
127 4G5G GDP 10.1266
128 2BVN GNP 10.1266
129 4PC3 GDP 10.1266
130 3U6K GDP 10.1266
131 1S8F GDP 10.1695
132 1S8F GDP 10.1695
133 1S8F GDP 10.1695
134 1S8F GDP 10.1695
135 1S8F GDP 10.1695
136 2HF9 GSP 10.177
137 2HF9 GSP 10.177
138 3BC1 GNP 10.2564
139 3BC1 GNP 10.2564
140 1Z0A GDP 10.3448
141 1Z0A GDP 10.3448
142 1Z0A GDP 10.3448
143 1Z0A GDP 10.3448
144 1Z0A GDP 10.3448
145 1Z0A GDP 10.3448
146 1Z0A GDP 10.3448
147 1Z0A GDP 10.3448
148 1Z0A GDP 10.3448
149 1Z0A GDP 10.3448
150 1Z0A GDP 10.3448
151 1Z0A GDP 10.3448
152 2F9L GDP 10.5528
153 6HH2 GDP 10.5556
154 1Z0F GDP 10.6145
155 3TKL GTP 10.7143
156 6IF3 GTP 10.7527
157 6IF2 GTP 10.7527
158 5XKT GNP 10.7595
159 5XKT GNP 10.7595
160 3Q72 GNP 10.8434
161 3Q72 GNP 10.8434
162 3SFV GDP 11.0497
163 5SZH GNP 11.1111
164 1VG8 GNP 11.1111
165 1VG8 GNP 11.1111
166 1VG8 GNP 11.1111
167 1VG0 GDP 11.1111
168 5UWH GNP 11.3924
169 5UWT GNP 11.3924
170 5UWR GNP 11.3924
171 5UWS GNP 11.3924
172 5UWI GNP 11.3924
173 5DHF GNP 11.3924
174 5UWQ GNP 11.3924
175 6CIT GNP 11.3924
176 5UWO GNP 11.3924
177 5UWJ GNP 11.3924
178 5UWU GNP 11.3924
179 5UWP GNP 11.3924
180 5DIF GNP 11.3924
181 5UWW GNP 11.3924
182 1OIV GDP 11.5183
183 1OIX GDP 11.5183
184 1OIV GDP 11.5183
185 4GOJ GNP 11.6667
186 1Z08 GNP 11.7647
187 1Z08 GNP 11.7647
188 1Z08 GNP 11.7647
189 1Z08 GNP 11.7647
190 1Z08 GNP 11.7647
191 1Z08 GNP 11.7647
192 5XC5 GTP 11.9318
193 2EW1 GNP 11.9403
194 3AQ4 GDP 11.9565
195 3AQ4 GDP 11.9565
196 3GJ8 GDP 12.2172
197 3GJ8 GDP 12.2172
198 3GJ0 GDP 12.2172
199 3GJ0 GDP 12.2172
200 3GJ7 GDP 12.2172
201 3GJ7 GDP 12.2172
202 5JCZ GDP 12.2905
203 3WYF GTP 12.3288
204 3WYF GTP 12.3288
205 1VG9 GDP 12.4324
206 1VG9 GDP 12.4324
207 1VG9 GDP 12.4324
208 1VG9 GDP 12.4324
209 1VG1 GDP 12.4324
210 2W2X GSP 12.4324
211 2W2X GSP 12.4324
212 1IBR GNP 12.5
213 4HAT GNP 12.5
214 3GJX GTP 12.5
215 4YLG GDP 12.7168
216 4YLG GDP 12.7168
217 2HV8 GTP 12.7907
218 2HV8 GTP 12.7907
219 2HV8 GTP 12.7907
220 1TU3 GNP 12.8655
221 1TU3 GNP 12.8655
222 1TU3 GNP 12.8655
223 1TU3 GNP 12.8655
224 1TU3 GNP 12.8655
225 1Z0J GTP 12.9412
226 1YVD GNP 13.0178
227 6A8D GDP 13.0208
228 6IYB GTP 13.0653
229 5Z2M GTP 13.0682
230 5Z2M GTP 13.0682
231 4KVG GTP 13.0952
232 2D7C GTP 13.1737
233 4HDO GNP 13.1737
234 1GUA GNP 13.1737
235 2D7C GTP 13.1737
236 4HDQ GNP 13.1737
237 3X1Z GNP 13.1737
238 3QBT GNP 13.5714
239 3QBT GNP 13.5714
240 3QBT GNP 13.5714
241 3QBT GNP 13.5714
242 2EFE GNH 13.8122
243 2EFE GNH 13.8122
244 6FA3 GNP 13.9535
245 6FA3 GNP 13.9535
246 6FA3 GNP 13.9535
247 6FA3 GNP 13.9535
248 6FA3 GNP 13.9535
249 4C4P GNP 14.0187
250 1KSH GDP 14.5161
251 3GJ5 GDP 14.7059
252 3GJ5 GDP 14.7059
253 3WYG GTP 14.8352
254 3GJ3 GDP 15.1515
255 1WA5 GTP 15.3409
256 1Z0K GTP 15.942
257 1Z0K GTP 15.942
258 5HCN GCP 16.4751
259 4M9Q GNP 17.1806
260 4M9Q GNP 17.1806
261 4M9Q GNP 17.1806
262 5BXQ GDP 17.3228
263 5BXQ GDP 17.3228
264 5BXQ GDP 17.3228
265 5UQW GDP 17.4603
266 3MJH GTP 17.6471
267 3MJH GTP 17.6471
268 2G77 GDP 17.6768
269 2C5L GTP 17.9191
270 2C5L GTP 17.9191
271 1ZD9 GDP 18.0851
272 1UPT GTP 18.1287
273 1UPT GTP 18.1287
274 1UPT GTP 18.1287
275 1UPT GTP 18.1287
276 1M2O GNP 18.3544
277 1M2O GNP 18.3544
278 1M2O GNP 18.3544
279 5E95 GDP 18.4524
280 6BVJ GNP 18.5629
281 6D59 GNP 18.5629
282 6BVL GNP 18.5629
283 6BVI GNP 18.5629
284 6BVK GNP 18.5629
285 6D5L GNP 18.5629
286 6D56 GNP 18.5629
287 6D5E GNP 18.5629
288 6D5J GNP 18.5629
289 6D5H GNP 18.5629
290 6CUO GNP 18.5629
291 6D55 GNP 18.5629
292 6D5V GNP 18.5629
293 6D5W GNP 18.5629
294 6D5G GNP 18.5629
295 1WQ1 GDP 18.6747
296 3DDC GNP 18.6747
297 3DDC GNP 18.6747
298 1NVV GNP 18.6747
299 1NVV GNP 18.6747
300 1NVV GNP 18.6747
301 1CLU DBG 18.6747
302 3KUD GDP 18.6747
303 1F6B GDP 18.6869
304 1F6B GDP 18.6869
305 2HCJ GDP 18.9189
306 1D5C GDP 19.1358
307 2QTV GNP 19.1617
308 5TB5 GDP 20
309 5TAR GDP 20
310 5TB5 GDP 20
311 2X77 GDP 20.1058
312 2X77 GDP 20.1058
313 4V0K GDP 20.1183
314 4V0K GDP 20.1183
315 5WHA GDP 20.5882
316 5WHA GDP 20.5882
317 5WHA GDP 20.5882
318 5WHA GDP 20.5882
319 5O2T GSP 20.7101
320 5WLB GNP 21.0843
321 5WLB GNP 21.0843
322 1Z06 GNP 21.164
323 4ZKD GDP 21.8354
324 3Q85 GNP 21.8935
325 3Q85 GNP 21.8935
326 1LFD GNP 24.1379
327 1LFD GNP 24.1379
328 3GJ4 GDP 24.2424
329 3GJ4 GDP 24.2424
330 5EE5 GTP 31.5789
331 2A5F GTP 32
332 1R4A GNP 32.1212
333 1R4A GNP 32.1212
334 1R4A GNP 32.1212
335 1R4A GNP 32.1212
336 3PCR GTP 33.3333
337 1YZG GDP 33.5196
338 2W83 GTP 33.9394
339 2W83 GTP 33.9394
340 2W83 GTP 33.9394
341 3N5C GDP 34.5679
342 3N5C GDP 34.5679
Pocket No.: 2; Query (leader) PDB : 5CK5; Ligand: GDP; Similar sites found with APoc: 323
This union binding pocket(no: 2) in the query (biounit: 5ck5.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 3TK1 GDP 2.21519
2 5FG3 GDP 2.21519
3 3MD0 GDP 2.21519
4 5W7Q GDP 2.21519
5 3TK1 GDP 2.21519
6 1DAR GDP 2.21519
7 4LC1 GDP 2.21519
8 1SKQ GDP 2.21519
9 1WF3 GNP 2.65781
10 1MKY GDP 2.8481
11 1YRB GDP 3.05344
12 3EC1 GDP 3.16456
13 3WYA GDP 3.22581
14 3WY9 GDP 3.22581
15 2RCN GDP 3.48101
16 2RCN GDP 3.48101
17 1TQ4 GDP 4.43038
18 5W75 GDP 4.43038
19 5W75 GDP 4.43038
20 3CX8 GSP 4.4335
21 4NON GDP 4.61538
22 4NON GDP 4.61538
23 5M04 GDP 4.72222
24 4NCN GTP 4.74684
25 4J0Q GDP 4.74684
26 4TMZ GSP 4.74684
27 4J0Q GDP 4.74684
28 4J0Q GDP 4.74684
29 4J0Q GDP 4.74684
30 4J0Q GDP 4.74684
31 6AU6 GDP 4.74684
32 1Z2A GDP 4.7619
33 6S6D GTP 4.79233
34 6G14 G4P 5.10204
35 6G14 G4P 5.10204
36 5WDR GNP 5.26316
37 5WDR GNP 5.26316
38 1G7S GDP 5.37975
39 3T5G GDP 5.52486
40 2ZEJ GDP 5.97826
41 2ZEJ GDP 5.97826
42 4RD0 GDP 6.01266
43 4HI0 GDP 6.03015
44 4HI0 GDP 6.03015
45 5YT0 GDP 6.32911
46 4B47 GDP 6.64557
47 2CJW GDP 6.77083
48 2CJW GDP 6.77083
49 3CNL GNP 6.87023
50 5OEC GDP 7.10383
51 6FF8 GTP 7.18232
52 6FF8 GTP 7.18232
53 4DKX GDP 7.40741
54 4DKX GDP 7.40741
55 2HT6 GDP 7.47126
56 2HT6 GDP 7.47126
57 6HDU GTP 7.6087
58 6HDU GTP 7.6087
59 6HDU GTP 7.6087
60 6HDU GTP 7.6087
61 3RAB GNP 7.69231
62 2XTZ GSP 7.91139
63 2XTZ GSP 7.91139
64 2A9K GDP 8.02139
65 1ZJ6 G3D 8.02139
66 1ZJ6 G3D 8.02139
67 1ZJ6 G3D 8.02139
68 4LHW GNP 8.04598
69 4LHW GNP 8.04598
70 4LHW GNP 8.04598
71 4LHW GNP 8.04598
72 1UAD GNP 8.08081
73 1UAD GNP 8.08081
74 2A5J GDP 8.37696
75 5LEF GTP 8.37696
76 5LEF GTP 8.37696
77 3RWO GDP 8.64865
78 3RWO GDP 8.64865
79 3RWO GDP 8.64865
80 3RWO GDP 8.64865
81 3DOE GTP 8.85417
82 5O74 GDP 8.88889
83 5O74 GDP 8.88889
84 5O74 GDP 8.88889
85 5O74 GDP 8.88889
86 5O74 GDP 8.88889
87 2Y8E GNP 8.93855
88 2Y8E GNP 8.93855
89 2Y8E GNP 8.93855
90 4ZI2 GNP 8.94737
91 4ZI2 GNP 8.94737
92 3NKV GNP 9.14286
93 3NKV GNP 9.14286
94 2FFQ GSP 9.35672
95 3CPJ GDP 9.41704
96 1O3Y GTP 9.63855
97 1O3Y GTP 9.63855
98 1J2J GTP 9.63855
99 2J59 GTP 9.63855
100 2J59 GTP 9.63855
101 2J59 GTP 9.63855
102 2J59 GTP 9.63855
103 2J59 GTP 9.63855
104 2BME GNP 9.67742
105 2BME GNP 9.67742
106 2BME GNP 9.67742
107 1S9D GDP 9.7561
108 1RE0 GDP 9.7561
109 1KY3 GDP 9.89011
110 1D8T GDP 10.1266
111 4P3Y GDP 10.1266
112 3U6B GDP 10.1266
113 1D8T GDP 10.1266
114 4G5G GDP 10.1266
115 5JBQ GDP 10.1266
116 3U6B GDP 10.1266
117 3U6K GDP 10.1266
118 2BVN GNP 10.1266
119 4PC3 GDP 10.1266
120 1S8F GDP 10.1695
121 1S8F GDP 10.1695
122 1S8F GDP 10.1695
123 1S8F GDP 10.1695
124 2HF9 GSP 10.177
125 2HF9 GSP 10.177
126 3BC1 GNP 10.2564
127 3BC1 GNP 10.2564
128 1Z0A GDP 10.3448
129 1Z0A GDP 10.3448
130 1Z0A GDP 10.3448
131 1Z0A GDP 10.3448
132 1Z0A GDP 10.3448
133 1Z0A GDP 10.3448
134 1Z0A GDP 10.3448
135 1Z0A GDP 10.3448
136 1Z0A GDP 10.3448
137 1Z0A GDP 10.3448
138 1Z0A GDP 10.3448
139 2F9L GDP 10.5528
140 6HH2 GDP 10.5556
141 1Z0F GDP 10.6145
142 3TKL GTP 10.7143
143 6IF3 GTP 10.7527
144 6IF2 GTP 10.7527
145 5XKT GNP 10.7595
146 5XKT GNP 10.7595
147 3Q72 GNP 10.8434
148 3Q72 GNP 10.8434
149 3SFV GDP 11.0497
150 5SZH GNP 11.1111
151 1VG8 GNP 11.1111
152 1VG0 GDP 11.1111
153 1VG8 GNP 11.1111
154 1VG8 GNP 11.1111
155 5UWH GNP 11.3924
156 5UWS GNP 11.3924
157 6CIT GNP 11.3924
158 5UWI GNP 11.3924
159 5UWO GNP 11.3924
160 5UWT GNP 11.3924
161 5UWR GNP 11.3924
162 5DHF GNP 11.3924
163 5UWP GNP 11.3924
164 5UWQ GNP 11.3924
165 5UWU GNP 11.3924
166 5DIF GNP 11.3924
167 5UWW GNP 11.3924
168 1OIX GDP 11.5183
169 1OIV GDP 11.5183
170 1OIV GDP 11.5183
171 4GOJ GNP 11.6667
172 1Z08 GNP 11.7647
173 1Z08 GNP 11.7647
174 1Z08 GNP 11.7647
175 1Z08 GNP 11.7647
176 1Z08 GNP 11.7647
177 1Z08 GNP 11.7647
178 3AB3 GDP 11.7886
179 5XC5 GTP 11.9318
180 2EW1 GNP 11.9403
181 3AQ4 GDP 11.9565
182 3AQ4 GDP 11.9565
183 3GJ8 GDP 12.2172
184 3GJ0 GDP 12.2172
185 3GJ8 GDP 12.2172
186 3GJ0 GDP 12.2172
187 3GJ7 GDP 12.2172
188 3GJ7 GDP 12.2172
189 5JCZ GDP 12.2905
190 3WYF GTP 12.3288
191 3WYF GTP 12.3288
192 1VG9 GDP 12.4324
193 1VG9 GDP 12.4324
194 1VG9 GDP 12.4324
195 1VG9 GDP 12.4324
196 1VG1 GDP 12.4324
197 4HAT GNP 12.5
198 1IBR GNP 12.5
199 3GJX GTP 12.5
200 4YLG GDP 12.7168
201 4YLG GDP 12.7168
202 2HV8 GTP 12.7907
203 2HV8 GTP 12.7907
204 2HV8 GTP 12.7907
205 1TU3 GNP 12.8655
206 1TU3 GNP 12.8655
207 1TU3 GNP 12.8655
208 1TU3 GNP 12.8655
209 1Z0J GTP 12.9412
210 1YVD GNP 13.0178
211 6A8D GDP 13.0208
212 6IYB GTP 13.0653
213 5Z2M GTP 13.0682
214 5Z2M GTP 13.0682
215 4KVG GTP 13.0952
216 2D7C GTP 13.1737
217 4HDO GNP 13.1737
218 2D7C GTP 13.1737
219 1GUA GNP 13.1737
220 4HDQ GNP 13.1737
221 3X1Z GNP 13.1737
222 3QBT GNP 13.5714
223 3QBT GNP 13.5714
224 3QBT GNP 13.5714
225 3QBT GNP 13.5714
226 2EFE GNH 13.8122
227 2EFE GNH 13.8122
228 6FA3 GNP 13.9535
229 6FA3 GNP 13.9535
230 6FA3 GNP 13.9535
231 6FA3 GNP 13.9535
232 6FA3 GNP 13.9535
233 4C4P GNP 14.0187
234 1KSH GDP 14.5161
235 3GJ5 GDP 14.7059
236 3GJ5 GDP 14.7059
237 3WYG GTP 14.8352
238 3GJ3 GDP 15.1515
239 1WA5 GTP 15.3409
240 1Z0K GTP 15.942
241 1Z0K GTP 15.942
242 5HCN GCP 16.4751
243 4M9Q GNP 17.1806
244 4M9Q GNP 17.1806
245 4M9Q GNP 17.1806
246 5BXQ GDP 17.3228
247 5BXQ GDP 17.3228
248 5BXQ GDP 17.3228
249 5UQW GDP 17.4603
250 3MJH GTP 17.6471
251 3MJH GTP 17.6471
252 2G77 GDP 17.6768
253 2C5L GTP 17.9191
254 2C5L GTP 17.9191
255 1ZD9 GDP 18.0851
256 1UPT GTP 18.1287
257 1UPT GTP 18.1287
258 1UPT GTP 18.1287
259 1UPT GTP 18.1287
260 1M2O GNP 18.3544
261 1M2O GNP 18.3544
262 1M2O GNP 18.3544
263 5E95 GDP 18.4524
264 6D5W GNP 18.5629
265 6BVJ GNP 18.5629
266 6BVI GNP 18.5629
267 6BVL GNP 18.5629
268 6BVK GNP 18.5629
269 6D59 GNP 18.5629
270 6D5L GNP 18.5629
271 6D5E GNP 18.5629
272 6D5H GNP 18.5629
273 6D56 GNP 18.5629
274 6D5J GNP 18.5629
275 6D55 GNP 18.5629
276 6CUO GNP 18.5629
277 6D5V GNP 18.5629
278 6D5G GNP 18.5629
279 1NVV GNP 18.6747
280 1NVV GNP 18.6747
281 1NVV GNP 18.6747
282 1WQ1 GDP 18.6747
283 1CLU DBG 18.6747
284 3DDC GNP 18.6747
285 3KUD GDP 18.6747
286 1F6B GDP 18.6869
287 1F6B GDP 18.6869
288 2HCJ GDP 18.9189
289 1D5C GDP 19.1358
290 2QTV GNP 19.1617
291 5TB5 GDP 20
292 5TAR GDP 20
293 2X77 GDP 20.1058
294 2X77 GDP 20.1058
295 4V0K GDP 20.1183
296 4V0K GDP 20.1183
297 5WHA GDP 20.5882
298 5WHA GDP 20.5882
299 5WHA GDP 20.5882
300 5WHA GDP 20.5882
301 5O2T GSP 20.7101
302 5WLB GNP 21.0843
303 5WLB GNP 21.0843
304 1Z06 GNP 21.164
305 4ZKD GDP 21.8354
306 3Q85 GNP 21.8935
307 3Q85 GNP 21.8935
308 1LFD GNP 24.1379
309 1LFD GNP 24.1379
310 3GJ4 GDP 24.2424
311 3GJ4 GDP 24.2424
312 5EE5 GTP 31.5789
313 1R4A GNP 32.1212
314 1R4A GNP 32.1212
315 1R4A GNP 32.1212
316 1R4A GNP 32.1212
317 3PCR GTP 33.3333
318 1YZG GDP 33.5196
319 2W83 GTP 33.9394
320 2W83 GTP 33.9394
321 2W83 GTP 33.9394
322 3N5C GDP 34.5679
323 3N5C GDP 34.5679
Pocket No.: 3; Query (leader) PDB : 5CK5; Ligand: GDP; Similar sites found with APoc: 340
This union binding pocket(no: 3) in the query (biounit: 5ck5.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 5FG3 GDP 2.21519
2 3MD0 GDP 2.21519
3 4LC1 GDP 2.21519
4 3TK1 GDP 2.21519
5 5W7Q GDP 2.21519
6 2C78 GNP 2.21519
7 4LC1 GDP 2.21519
8 3TK1 GDP 2.21519
9 3VMF GTP 2.21519
10 1SKQ GDP 2.21519
11 1D2E GDP 2.21519
12 1D2E GDP 2.21519
13 1DAR GDP 2.21519
14 1RYH GNP 2.46305
15 1WF3 GNP 2.65781
16 3E5H GNP 2.80899
17 1MKY GDP 2.8481
18 1YRB GDP 3.05344
19 3EC1 GDP 3.16456
20 3WXM GTP 3.16456
21 3WXM GTP 3.16456
22 3WY9 GDP 3.22581
23 3WY9 GDP 3.22581
24 3WYA GDP 3.22581
25 2RCN GDP 3.48101
26 2RCN GDP 3.48101
27 1TQ4 GDP 4.43038
28 5W75 GDP 4.43038
29 5W75 GDP 4.43038
30 5W75 GDP 4.43038
31 3CX8 GSP 4.4335
32 4NON GDP 4.61538
33 4NON GDP 4.61538
34 5M04 GDP 4.72222
35 4NCN GTP 4.74684
36 4TMZ GSP 4.74684
37 4J0Q GDP 4.74684
38 4J0Q GDP 4.74684
39 4J0Q GDP 4.74684
40 4J0Q GDP 4.74684
41 4J0Q GDP 4.74684
42 6AU6 GDP 4.74684
43 1Z2A GDP 4.7619
44 6S6D GTP 4.79233
45 6S6D GDP 4.79233
46 1FQK GDP 5.06329
47 6G14 G4P 5.10204
48 6G14 G4P 5.10204
49 5WDR GNP 5.26316
50 5WDR GNP 5.26316
51 1G7S GDP 5.37975
52 3T5G GDP 5.52486
53 2ZEJ GDP 5.97826
54 2ZEJ GDP 5.97826
55 4RD0 GDP 6.01266
56 4HI0 GDP 6.03015
57 4HI0 GDP 6.03015
58 1CS4 GSP 6.13208
59 5YT0 GDP 6.32911
60 2J0V GDP 6.60377
61 4B47 GDP 6.64557
62 2CJW GDP 6.77083
63 2CJW GDP 6.77083
64 3CNL GNP 6.87023
65 5OEC GDP 7.10383
66 6FF8 GTP 7.18232
67 6FF8 GTP 7.18232
68 4DKX GDP 7.40741
69 4DKX GDP 7.40741
70 2HT6 GDP 7.47126
71 2HT6 GDP 7.47126
72 2QN6 GDP 7.52688
73 6HDU GTP 7.6087
74 6HDU GTP 7.6087
75 6HDU GTP 7.6087
76 6HDU GTP 7.6087
77 3RAB GNP 7.69231
78 1SVI GDP 7.69231
79 2XTZ GSP 7.91139
80 2XTZ GSP 7.91139
81 2XTZ GSP 7.91139
82 2A9K GDP 8.02139
83 1ZJ6 G3D 8.02139
84 1ZJ6 G3D 8.02139
85 1ZJ6 G3D 8.02139
86 4LHW GNP 8.04598
87 4LHW GNP 8.04598
88 4LHW GNP 8.04598
89 1UAD GNP 8.08081
90 1UAD GNP 8.08081
91 2A5J GDP 8.37696
92 5LEF GTP 8.37696
93 5LEF GTP 8.37696
94 3RWO GDP 8.64865
95 3RWO GDP 8.64865
96 3RWO GDP 8.64865
97 3RWO GDP 8.64865
98 3DOE GTP 8.85417
99 5O74 GDP 8.88889
100 5O74 GDP 8.88889
101 5O74 GDP 8.88889
102 5O74 GDP 8.88889
103 5O74 GDP 8.88889
104 2Y8E GNP 8.93855
105 2Y8E GNP 8.93855
106 2Y8E GNP 8.93855
107 4ZI2 GNP 8.94737
108 3NKV GNP 9.14286
109 3NKV GNP 9.14286
110 2FFQ GSP 9.35672
111 3CPJ GDP 9.41704
112 5KUT GDP 9.52381
113 5KUT GDP 9.52381
114 5KUT GDP 9.52381
115 1J2J GTP 9.63855
116 1O3Y GTP 9.63855
117 1O3Y GTP 9.63855
118 2J59 GTP 9.63855
119 2J59 GTP 9.63855
120 2J59 GTP 9.63855
121 2J59 GTP 9.63855
122 2BME GNP 9.67742
123 2BME GNP 9.67742
124 2BME GNP 9.67742
125 1S9D GDP 9.7561
126 1RE0 GDP 9.7561
127 1D8T GDP 10.1266
128 3U6B GDP 10.1266
129 4P3Y GDP 10.1266
130 1D8T GDP 10.1266
131 3U6B GDP 10.1266
132 4G5G GDP 10.1266
133 5JBQ GDP 10.1266
134 2BVN GNP 10.1266
135 3U6K GDP 10.1266
136 3U6K GDP 10.1266
137 4PC3 GDP 10.1266
138 1S8F GDP 10.1695
139 1S8F GDP 10.1695
140 1S8F GDP 10.1695
141 1S8F GDP 10.1695
142 1S8F GDP 10.1695
143 2HF9 GSP 10.177
144 2HF9 GSP 10.177
145 3BC1 GNP 10.2564
146 3BC1 GNP 10.2564
147 1Z0A GDP 10.3448
148 1Z0A GDP 10.3448
149 1Z0A GDP 10.3448
150 1Z0A GDP 10.3448
151 1Z0A GDP 10.3448
152 1Z0A GDP 10.3448
153 1Z0A GDP 10.3448
154 1Z0A GDP 10.3448
155 1Z0A GDP 10.3448
156 1Z0A GDP 10.3448
157 1Z0A GDP 10.3448
158 2F9L GDP 10.5528
159 6HH2 GDP 10.5556
160 1Z0F GDP 10.6145
161 3TKL GTP 10.7143
162 6IF2 GTP 10.7527
163 5XKT GNP 10.7595
164 5XKT GNP 10.7595
165 3Q72 GNP 10.8434
166 3Q72 GNP 10.8434
167 3SFV GDP 11.0497
168 5SZH GNP 11.1111
169 1VG8 GNP 11.1111
170 1VG8 GNP 11.1111
171 1VG8 GNP 11.1111
172 5UWI GNP 11.3924
173 6CIT GNP 11.3924
174 5UWT GNP 11.3924
175 5UWH GNP 11.3924
176 5UWR GNP 11.3924
177 5UWS GNP 11.3924
178 5UWP GNP 11.3924
179 5UWO GNP 11.3924
180 5DIF GNP 11.3924
181 5DHF GNP 11.3924
182 5UWU GNP 11.3924
183 5UWW GNP 11.3924
184 5UWQ GNP 11.3924
185 1OIX GDP 11.5183
186 1OIV GDP 11.5183
187 1OIV GDP 11.5183
188 4GOJ GNP 11.6667
189 1Z08 GNP 11.7647
190 1Z08 GNP 11.7647
191 1Z08 GNP 11.7647
192 1Z08 GNP 11.7647
193 1Z08 GNP 11.7647
194 1Z08 GNP 11.7647
195 3AB3 GDP 11.7886
196 5XC5 GTP 11.9318
197 2EW1 GNP 11.9403
198 3AQ4 GDP 11.9565
199 3AQ4 GDP 11.9565
200 3GJ0 GDP 12.2172
201 3GJ8 GDP 12.2172
202 3GJ8 GDP 12.2172
203 3GJ7 GDP 12.2172
204 3GJ0 GDP 12.2172
205 3GJ7 GDP 12.2172
206 5JCZ GDP 12.2905
207 3WYF GTP 12.3288
208 3WYF GTP 12.3288
209 1VG9 GDP 12.4324
210 1VG9 GDP 12.4324
211 1VG9 GDP 12.4324
212 1VG9 GDP 12.4324
213 1VG1 GDP 12.4324
214 2W2X GSP 12.4324
215 2W2X GSP 12.4324
216 4HAT GNP 12.5
217 1IBR GNP 12.5
218 3GJX GTP 12.5
219 4YLG GDP 12.7168
220 4YLG GDP 12.7168
221 2HV8 GTP 12.7907
222 2HV8 GTP 12.7907
223 2HV8 GTP 12.7907
224 1TU3 GNP 12.8655
225 1TU3 GNP 12.8655
226 1TU3 GNP 12.8655
227 1TU3 GNP 12.8655
228 1Z0J GTP 12.9412
229 1YVD GNP 13.0178
230 6A8D GDP 13.0208
231 6IYB GTP 13.0653
232 5Z2M GTP 13.0682
233 4KVG GTP 13.0952
234 2D7C GTP 13.1737
235 4HDO GNP 13.1737
236 1GUA GNP 13.1737
237 4HDQ GNP 13.1737
238 3X1Z GNP 13.1737
239 3QBT GNP 13.5714
240 3QBT GNP 13.5714
241 3QBT GNP 13.5714
242 3QBT GNP 13.5714
243 2EFE GNH 13.8122
244 2EFE GNH 13.8122
245 6FA3 GNP 13.9535
246 6FA3 GNP 13.9535
247 6FA3 GNP 13.9535
248 6FA3 GNP 13.9535
249 6FA3 GNP 13.9535
250 4C4P GNP 14.0187
251 1KSH GDP 14.5161
252 3GJ5 GDP 14.7059
253 3GJ5 GDP 14.7059
254 3WYG GTP 14.8352
255 3GJ3 GDP 15.1515
256 1WA5 GTP 15.3409
257 6CRK GDP 15.493
258 1Z0K GTP 15.942
259 1Z0K GTP 15.942
260 5HCN GCP 16.4751
261 4M9Q GNP 17.1806
262 4M9Q GNP 17.1806
263 5BXQ GDP 17.3228
264 5BXQ GDP 17.3228
265 5BXQ GDP 17.3228
266 5UQW GDP 17.4603
267 3MJH GTP 17.6471
268 3MJH GTP 17.6471
269 2G77 GDP 17.6768
270 2C5L GTP 17.9191
271 2C5L GTP 17.9191
272 1ZD9 GDP 18.0851
273 1UPT GTP 18.1287
274 1UPT GTP 18.1287
275 1UPT GTP 18.1287
276 1UPT GTP 18.1287
277 1M2O GNP 18.3544
278 1M2O GNP 18.3544
279 1M2O GNP 18.3544
280 5E95 GDP 18.4524
281 6D5W GNP 18.5629
282 6BVJ GNP 18.5629
283 6BVL GNP 18.5629
284 6BVI GNP 18.5629
285 6D59 GNP 18.5629
286 6BVK GNP 18.5629
287 6D56 GNP 18.5629
288 6D5H GNP 18.5629
289 6D55 GNP 18.5629
290 6D5E GNP 18.5629
291 6D5J GNP 18.5629
292 6CUO GNP 18.5629
293 6D5V GNP 18.5629
294 6D5G GNP 18.5629
295 1NVV GNP 18.6747
296 1NVV GNP 18.6747
297 1NVV GNP 18.6747
298 1WQ1 GDP 18.6747
299 3DDC GNP 18.6747
300 1CLU DBG 18.6747
301 3KUD GDP 18.6747
302 1F6B GDP 18.6869
303 1F6B GDP 18.6869
304 2HCJ GDP 18.9189
305 2QTV GNP 19.1617
306 5TB5 GDP 20
307 5TAR GDP 20
308 5TB5 GDP 20
309 2X77 GDP 20.1058
310 2X77 GDP 20.1058
311 4V0K GDP 20.1183
312 4V0K GDP 20.1183
313 5WHA GDP 20.5882
314 5WHA GDP 20.5882
315 5WHA GDP 20.5882
316 5WHA GDP 20.5882
317 5O2T GSP 20.7101
318 5WLB GNP 21.0843
319 5WLB GNP 21.0843
320 1Z06 GNP 21.164
321 4ZKD GDP 21.8354
322 3Q85 GNP 21.8935
323 3Q85 GNP 21.8935
324 1LFD GNP 24.1379
325 1LFD GNP 24.1379
326 3GJ4 GDP 24.2424
327 3GJ4 GDP 24.2424
328 4DID GDP 27.6316
329 5EE5 GTP 31.5789
330 1R4A GNP 32.1212
331 1R4A GNP 32.1212
332 1R4A GNP 32.1212
333 1R4A GNP 32.1212
334 3PCR GTP 33.3333
335 1YZG GDP 33.5196
336 2W83 GTP 33.9394
337 2W83 GTP 33.9394
338 2W83 GTP 33.9394
339 3N5C GDP 34.5679
340 3N5C GDP 34.5679
Pocket No.: 4; Query (leader) PDB : 5CK5; Ligand: GDP; Similar sites found with APoc: 187
This union binding pocket(no: 4) in the query (biounit: 5ck5.bio4) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 3TK1 GDP