Receptor
PDB id Resolution Class Description Source Keywords
5CJ3 1.65 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF THE ZORBAMYCIN BINDING PROTEIN (ZBMA) F STREPTOMYCES FLAVOVIRIDIS WITH ZORBAMYCIN STREPTOMYCES FLAVOVIRIDIS STRUCTURAL GENOMICS PSI-BIOLOGY MIDWEST CENTER FOR STRUCTUGENOMICS MCSG NATPRO ZORBAMYCIN BINDING PROTEIN ENZYME FOR NATURAL PRODUCT BIOSYNTHESIS ZORBAMYCIN ANTIBIOTIC BIPROTEIN-ANTIBIOTIC COMPLEX
Ref.: CRYSTAL STRUCTURE OF THE ZORBAMYCIN-BINDING PROTEIN THE PRIMARY SELF-RESISTANCE ELEMENT IN STREPTOMYCES FLAVOVIRIDIS ATCC21892. BIOCHEMISTRY V. 54 6842 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CL A:203;
B:203;
 Invalid;
Invalid;
 none;
none;
 submit data
35.453 Cl [Cl-]
CU A:202;
B:202;
 Invalid;
Invalid;
 none;
none;
 submit data
63.546 Cu [Cu+2...
52G A:201;
B:201;
 Valid;
Valid;
 none;
Atoms found MORE than expected: % Diff = 2;
 submit data
1412.51 C55 H85 N19 O21 S2 [H]/N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5CJ3 1.65 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF THE ZORBAMYCIN BINDING PROTEIN (ZBMA) F STREPTOMYCES FLAVOVIRIDIS WITH ZORBAMYCIN STREPTOMYCES FLAVOVIRIDIS STRUCTURAL GENOMICS PSI-BIOLOGY MIDWEST CENTER FOR STRUCTUGENOMICS MCSG NATPRO ZORBAMYCIN BINDING PROTEIN ENZYME FOR NATURAL PRODUCT BIOSYNTHESIS ZORBAMYCIN ANTIBIOTIC BIPROTEIN-ANTIBIOTIC COMPLEX
Ref.: CRYSTAL STRUCTURE OF THE ZORBAMYCIN-BINDING PROTEIN THE PRIMARY SELF-RESISTANCE ELEMENT IN STREPTOMYCES FLAVOVIRIDIS ATCC21892. BIOCHEMISTRY V. 54 6842 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 5CJ3 - 52G C55 H85 N19 O21 S2 [H]/N=C(CC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 5CJ3 - 52G C55 H85 N19 O21 S2 [H]/N=C(CC....
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 1JIE - BLM C55 H85 N17 O21 S3 Cc1c(nc(nc....
2 1JIF Kd = 120 nM CU BLM n/a n/a
3 2ZHP Ka = 47100000 M^-1 BY6 CU n/a n/a
4 1XRK - BLM C55 H85 N17 O21 S3 Cc1c(nc(nc....
5 5CJ3 - 52G C55 H85 N19 O21 S2 [H]/N=C(CC....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: 52G; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 52G 1 1
2 BLM 0.553648 0.855556
3 BY6 CU 0.477178 0.870588
Similar Ligands (3D)
Ligand no: 1; Ligand: 52G; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5CJ3; Ligand: 52G; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5cj3.bio1) has 30 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5CJ3; Ligand: 52G; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5cj3.bio1) has 31 residues
No: Leader PDB Ligand Sequence Similarity
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