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Receptor
PDB id Resolution Class Description Source Keywords
5BXQ 2.5 Å EC: 3.-.-.- STRUCTURE OF THE NTF2:RANGDP COMPLEX RATTUS NORVEGICUS NUCLEAR TRANSPORT RANGDP NTF2 TRANSPORT PROTEIN
Ref.: STRUCTURAL BASIS FOR MOLECULAR RECOGNITION BETWEEN TRANSPORT FACTOR 2 (NTF2) AND THE GDP-BOUND FORM OF RAS-FAMILY GTPASE RAN. J. MOL. BIOL. V. 277 635 1998
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG E:301;
D:302;
C:302;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
GDP E:303;
C:301;
D:301;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
SO4 E:302;
Invalid;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5BXQ 2.5 Å EC: 3.-.-.- STRUCTURE OF THE NTF2:RANGDP COMPLEX RATTUS NORVEGICUS NUCLEAR TRANSPORT RANGDP NTF2 TRANSPORT PROTEIN
Ref.: STRUCTURAL BASIS FOR MOLECULAR RECOGNITION BETWEEN TRANSPORT FACTOR 2 (NTF2) AND THE GDP-BOUND FORM OF RAS-FAMILY GTPASE RAN. J. MOL. BIOL. V. 277 635 1998
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 5BXQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1A2K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 5BXQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1A2K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 173 families.
1 5BXQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1A2K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5BXQ; Ligand: GDP; Similar sites found with APoc: 593
This union binding pocket(no: 1) in the query (biounit: 5bxq.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1I0B PEL 1.38889
2 3QVV 3QV 1.85185
3 3QVV A3P 1.85185
4 3IUY AMP 2.3622
5 2Y65 ADP 2.77778
6 2ORV 4TA 2.77778
7 1G3M PCQ 2.77778
8 1G3M A3P 2.77778
9 5EP2 AZU 2.77778
10 5K2M ADP 2.77778
11 1W4R TTP 3.07692
12 2F5X ASP 3.14961
13 4V03 ADP 3.24074
14 2OFW ADX 3.36538
15 3P4X ADP 3.7037
16 6B8B ADP 3.7037
17 1SVM ATP 3.7037
18 1W5T ANP 3.7037
19 1W5T ADP 3.7037
20 1JJV ATP 3.8835
21 2PEZ DAT 3.91061
22 2PEZ GGZ 3.91061
23 5KSZ GCP 3.93701
24 1GOJ ADP 3.93701
25 2VVG ADP 3.93701
26 3BFV ADP 3.93701
27 2JLR ANP 3.93701
28 1DAK DPU 3.93701
29 1DAK ADP 3.93701
30 5NM7 GLY 3.93701
31 5H4S RAM 3.93701
32 1Z83 AP5 4.08163
33 1FP6 ADP 4.16667
34 1P72 ADP 4.16667
35 4TL6 ANP 4.16667
36 3BER AMP 4.16667
37 5LV1 78T 4.16667
38 1BXG NAD 4.16667
39 4JZ8 CIT 4.16667
40 1XX6 ADP 4.18848
41 4TMK T5A 4.22535
42 4KOT CE3 4.32099
43 2F3R G5P 4.34783
44 1D2N ANP 4.41176
45 5J1J ANP 4.5614
46 3KJI ADP 4.62963
47 1E2K TMC 4.62963
48 1L2T ATP 4.62963
49 1K6M AGS 4.62963
50 4FCW ADP 4.62963
51 5BYK A3P 4.6332
52 5BYK OAQ 4.6332
53 3FKQ ATP 4.72441
54 3ZFD ANP 4.72441
55 3B5J 12D 4.72441
56 5AK0 8V1 4.72441
57 1KK8 BEF ADP 4.72441
58 3DZD ADP 4.72441
59 1B7T ADP 4.72441
60 2ZJ5 ADP 4.72441
61 4UTG ANP 4.72441
62 2X7I CIT 4.72441
63 4ITM ATP 4.72441
64 2V5K OXM 4.72441
65 2IL4 COA 4.85437
66 4WOP CTP 4.88889
67 5L3W GDP 5.09259
68 5FHD ADP ALF 5.09259
69 2OZE AGS 5.09259
70 2AWN ADP 5.09259
71 5FTB ANP 5.09259
72 1BO4 COA 5.35714
73 2QQ0 ANP 5.43478
74 2QQ0 THM 5.43478
75 2QQ0 TMP 5.43478
76 2QQ0 ADP 5.43478
77 4ZKD GDP 5.51181
78 1QF5 GDP 5.51181
79 1QF5 RPL 5.51181
80 1V8K ANP 5.51181
81 5I34 GDP 5.51181
82 5XDR ADP 5.51181
83 3NHB ADP 5.51181
84 2CDN ADP 5.51181
85 4IHQ ADP 5.51181
86 1XP8 AGS 5.51181
87 2PWY SAH 5.51181
88 6AIC AMP 5.51181
89 1H74 ADP 5.51181
90 4A4Z ANP 5.51181
91 2NAD NAD 5.51181
92 3MGB PAP 5.51181
93 4J0Q GDP 5.55556
94 4RZ3 ADP 5.55556
95 3LRE ADP 5.55556
96 1VHT BA3 5.55556
97 4IEE AGS 5.55556
98 2G2Y MLI 5.55556
99 1ME8 RVP 5.55556
100 5GVR LMR 5.55556
101 4R2I ANP 5.71429
102 1Y63 ADP 5.97826
103 3T34 GDP 6.01852
104 3COB ADP 6.01852
105 3H4S ADP 6.01852
106 4FRZ ADP 6.01852
107 3QKT ANP 6.01852
108 5EXT ADP 6.01852
109 3QXC ATP 6.01852
110 4IDN GNP 6.01852
111 3B7G ANP 6.01852
112 2DPY ADP 6.01852
113 1QF9 ADP 6.18557
114 1QF9 ALF 6.18557
115 1QF9 C5P 6.18557
116 3E70 GDP 6.29921
117 3ZQ6 ADP ALF 6.29921
118 1G3Q ADP 6.29921
119 6A20 ADP 6.29921
120 1ZIN AP5 6.29921
121 5G3Y ADP 6.29921
122 1S3G AP5 6.29921
123 4X8O AP5 6.29921
124 4MKG AP5 6.29921
125 4MKF AP5 6.29921
126 5G41 AP5 6.29921
127 5M7P ADP 6.29921
128 4GBM A3P 6.29921
129 3BFX A3P 6.29921
130 5ZB0 ADP 6.29921
131 5ZB0 TYD 6.29921
132 5YF1 SFG 6.29921
133 5YF1 8V0 6.29921
134 4M7V RAR 6.29921
135 5E5U MLI 6.29921
136 1NV8 SAM 6.29921
137 4M7V NAP 6.29921
138 4U00 ADP 6.48148
139 1IN4 ADP 6.48148
140 1YTM ATP 6.48148
141 5X40 ACP 6.48148
142 2BEK ATP 6.48148
143 4PX9 ADP 6.48148
144 2CBZ ATP 6.48148
145 3RLF ANP 6.48148
146 1R0X ATP 6.48148
147 2I4I AMP 6.48148
148 1GXU 2HP 6.59341
149 4HUT ATP 6.80628
150 3WYA GDP 6.94444
151 3WY9 GDP 6.94444
152 3CNL GNP 6.94444
153 5L3S GNP 6.94444
154 5L3V GDP 6.94444
155 3DC4 ADP 6.94444
156 2ZFI ADP 6.94444
157 1CR1 TTP 6.94444
158 4GOX A3P 6.94444
159 5VGR GDP 6.94444
160 5Z69 AGS 6.94444
161 4UXH T5A 7.06522
162 2WOJ ADP ALF 7.08661
163 3ZS9 ADP ALF 7.08661
164 2FNA ADP 7.08661
165 2CHG ANP 7.08661
166 1OS1 PYR 7.08661
167 1OS1 ATP 7.08661
168 5BQ5 ADP BEF 7.08661
169 5ZXD ATP 7.08661
170 2PZE ATP 7.08661
171 4BFW ZVW 7.08661
172 2ZPA ADP 7.08661
173 2GMV UN8 7.08661
174 2GMV PEP 7.08661
175 1NHX FTB 7.08661
176 1NHX PEP 7.08661
177 1NST A3P 7.08661
178 4JLS 3ZE 7.08661
179 1ZUI SKM 7.14286
180 4BQS K2Q 7.38636
181 4BQS ADP 7.38636
182 1SVK ALF GDP 7.40741
183 1BH2 GSP 7.40741
184 1Y3A GDP 7.40741
185 2OM2 GDP 7.40741
186 2GKS ADP 7.40741
187 3TBK ANP 7.40741
188 2FSH ANP 7.40741
189 2B8T THM 7.40741
190 3V2U ATP 7.40741
191 6C90 ADP 7.69231
192 2QZ4 ADP 7.87037
193 2BIF ANP 7.87037
194 2BIF SIN 7.87037
195 2ZE7 DST 7.87037
196 2ZE7 AMP 7.87037
197 2XTZ GSP 7.87402
198 3AB3 GDP 7.87402
199 1ZCB GDP 7.87402
200 4KVA GTP 7.87402
201 1KO8 6PG 7.87402
202 5LTJ ADP 7.87402
203 5K5Z ANP 7.87402
204 4HSE ADP 7.87402
205 1UKZ ADP 7.87402
206 4NU0 AP5 7.87402
207 1XEX ATP 7.87402
208 3KTA AP5 7.87402
209 4WZ6 ATP 7.87402
210 3BOS CDP 7.87402
211 4IOK XPO 7.87402
212 4IOK ADP 7.87402
213 5LTJ BEF 7.87402
214 1OE0 TTP 7.87402
215 2JJK R15 7.87402
216 2J5V PCA 7.87402
217 4QRH 0O2 7.87402
218 2A2C ADP 7.87402
219 2A2C NG1 7.87402
220 3R96 AMP 7.87402
221 3R96 ACO 7.87402
222 3KC1 2T6 7.87402
223 3L9W AMP 7.87402
224 5KUT GDP 7.93651
225 3FWY ADP 8.33333
226 5BN3 ADP 8.33333
227 4YMU ATP 8.33333
228 1F5N GNP 8.33333
229 1XMV ADP 8.33333
230 4PJ3 ANP 8.33333
231 5X62 SAH 8.33333
232 4TTQ ATP 8.37209
233 1NN5 ANP 8.37209
234 1NN5 2DT 8.37209
235 2WJG GDP 8.51064
236 1G7C 5GP 8.51064
237 2C78 GNP 8.66142
238 3WXM GTP 8.66142
239 2C77 GNP 8.66142
240 6AU6 GDP 8.66142
241 1SKQ GDP 8.66142
242 4XTR ATP 8.66142
243 4XTR ADP 8.66142
244 4XVU ATP 8.66142
245 2NCD ADP 8.66142
246 1XKV ATP 8.66142
247 2CE7 ADP 8.66142
248 5IFS ADP 8.66142
249 1RRC ADP 8.66142
250 2W58 ADP 8.66142
251 5Y6N ADP 8.66142
252 3EZ2 ADP 8.66142
253 2PL3 ADP 8.66142
254 2FAH GDP 8.66142
255 5LLB 6YZ 8.66142
256 1Q20 PLO 8.66142
257 1Q20 A3P 8.66142
258 1VKJ A3P 8.66142
259 6EJI UD2 8.66142
260 3PQC GDP 8.71795
261 4QM7 GTP 8.77193
262 2JAQ DCP 8.78049
263 3FB4 AP5 8.7963
264 5UIV ADP 8.7963
265 4QOS ADP 8.7963
266 5C9P FUC 8.7963
267 2WJH GDP 9.03614
268 2WJH FLC 9.03614
269 4NON GDP 9.25926
270 1PUJ GNP 9.25926
271 1U0J ADP 9.25926
272 4DDY DN6 9.25926
273 3VMF GTP 9.44882
274 1NRJ GTP 9.44882
275 1LVK MNT BEF 9.44882
276 2ZR9 DTP 9.44882
277 4R43 GDP 9.44882
278 4PPF FLC 9.44882
279 4YS0 ADP 9.44882
280 6H5E ANP 9.44882
281 2YOH WMJ 9.52381
282 4HI0 GDP 9.54774
283 4RD0 GDP 9.72222
284 2QN6 GDP 9.72222
285 4LPS GDP 9.72222
286 2WHX ADP 9.72222
287 6CS8 F9Y 9.72222
288 1ION ADP 9.72222
289 1B0U ATP 9.72222
290 5KSP GDP 10
291 5H7K GDP 10.1852
292 5H7J GCP 10.1852
293 5TSH ANP 10.1852
294 4D81 ADP 10.1852
295 5TSH ADP 10.1852
296 1YRB GDP 10.2362
297 4P4T GDP 10.2362
298 4Q1A UDP 10.2362
299 4Q1A 2XZ 10.2362
300 3A4M ADP 10.2362
301 2XAU ADP 10.2362
302 1G41 ADP 10.2362
303 5VHC BEF ADP 10.2362
304 3FVQ ATP 10.2362
305 3Q9L ATP 10.2362
306 3DKP ADP 10.2362
307 1FNN ADP 10.2362
308 5MZN ADP 10.2362
309 3KLL MAL 10.2362
310 2ZW5 COA 10.2362
311 1OJ4 ANP 10.2362
312 2BVN GNP 10.6481
313 2HCJ GDP 10.6481
314 1D8T GDP 10.6481
315 3U6B GDP 10.6481
316 4G5G GDP 10.6481
317 5JBQ GDP 10.6481
318 4P3Y GDP 10.6481
319 3U6K GDP 10.6481
320 4PC3 GDP 10.6481
321 4XGU ADP 10.6481
322 2IS6 ADP 10.6481
323 1FQJ GDP 10.8844
324 5W75 GDP 11.0236
325 5XKT GNP 11.0236
326 5IRR GSP 11.0236
327 3UIE ANP 11.0236
328 5U32 GDP 11.0236
329 2Q2Y ADP 11.0236
330 2Q2Y MKR 11.0236
331 5MVR ADP 11.0236
332 1OFH ADP 11.0236
333 3H86 AP5 11.0236
334 4YJ1 ADP 11.0236
335 5H67 ATP 11.0236
336 2OG2 MLI 11.0236
337 5MEX SZZ 11.0236
338 2WZF BGC 11.0236
339 5MEX PAP 11.0236
340 6B4K ANP 11.1111
341 3ZIA ATP 11.1111
342 5H68 AGS 11.1111
343 3ZIA ADP 11.1111
344 1M7G ADX 11.3744
345 1M7G AV2 11.3744
346 1M7G ADP 11.3744
347 6CRK GDP 11.5741
348 5KDO GDP 11.5741
349 1X6V ADP 11.5741
350 1AKY AP5 11.5741
351 1UJ2 ADP 11.5741
352 1UJ2 C5P 11.5741
353 2FH5 GTP 11.811
354 1LVG ADP 11.811
355 5L3R GCP 11.811
356 4H1V GNP 11.811
357 1IHU ADP 11.811
358 1IHU AF3 11.811
359 1BG2 ADP 11.811
360 2QG6 NMN 11.811
361 4JLV ADP 11.811
362 3B9Q MLI 11.811
363 1S7N COA 11.811
364 3CIF G3H 11.811
365 3CIF NAD 11.811
366 2VOH CIT 11.811
367 5GOE GDP 12.037
368 3DEF GDP 12.037
369 2XT3 ADP 12.037
370 3TMK T5A 12.037
371 1SQ5 ADP 12.037
372 2Z5F A3P 12.037
373 4CVN ADP 12.4088
374 1H65 GDP 12.5
375 2IYL GDP 12.5
376 4WZA ACP 12.5
377 4WZA ADP 12.5
378 3IO3 ADP 12.5
379 1OXV ANP 12.5
380 4NE2 ADP 12.5
381 4NE2 SH2 12.5
382 1NY5 ADP 12.5
383 2RCN GDP 12.5984
384 2ODE ALF GDP 12.5984
385 5IRN ADP 12.5984
386 4LYA ATP 12.5984
387 1JI0 ATP 12.5984
388 1Z6T ADP 12.5984
389 4YDS ATP 12.5984
390 5TIV A3P 12.5984
391 5AHO TLA 12.5984
392 3ITJ CIT 12.5984
393 1AQU A3P 12.5984
394 4TMZ GSP 12.963
395 4NCN GTP 12.963
396 5HCN GCP 12.963
397 1DAR GDP 12.963
398 3TK1 GDP 13.3858
399 5ZBR ANP 13.3858
400 1G6H ADP 13.3858
401 5WRJ A3P 13.3858
402 5WRI A3P 13.3858
403 1F2U ATP 13.4228
404 5FG3 GDP 13.4259
405 2O0J ADP 13.4259
406 4E03 ADP 13.5922
407 1TQ4 GDP 13.8889
408 3CX8 GSP 14.1732
409 1F9V ADP 14.1732
410 1NJF ADP 14.1732
411 1NJF AGS 14.1732
412 5I0H ADP BEF 14.1732
413 2ZTS ADP 14.1732
414 2GK6 ADP 14.1732
415 4B47 GDP 14.3519
416 1JJ7 ADP 14.3519
417 5M04 GDP 14.8148
418 2OBM ADP 14.9606
419 4DCT GDP 15.2778
420 5LB3 ADP 15.748
421 3RC3 ANP 15.748
422 2HF9 GSP 16.5354
423 2D7D ADP 16.5354
424 1OYY AGS 16.5354
425 5J1S ATP 17.0732
426 5W76 GDP 17.1296
427 5CK5 GDP 17.3228
428 5W7Q GDP 17.3228
429 5WC2 ADP 17.3228
430 5N69 ADP 17.3228
431 4LJ9 ACP 17.3228
432 4OI4 ATP 17.3913
433 1IWE IMP 17.5926
434 1KK1 GNP 18.1102
435 1RJ9 GCP 18.1102
436 3IIJ ADP 18.3333
437 4R98 GNH 18.8192
438 3W5J GDP 18.8976
439 2VB6 ADP BEF 18.8976
440 4PFO ADP 18.8976
441 4ZG4 VO4 ADP 18.9815
442 5HR5 ADP 19.4444
443 2X77 GDP 19.5767
444 1P9B GDP 19.685
445 2C9O ADP 19.685
446 4ZDJ UTP 19.685
447 2V2V V12 19.685
448 1WDT GTP 19.9074
449 1W7J ADP BEF 19.9074
450 2V7Q ATP 20.4724
451 1W0J ADP 20.4724
452 2CK3 ANP 20.4724
453 2CK3 ADP 20.4724
454 1W0J ADP BEF 20.4724
455 2V7Q ADP 20.4724
456 1CS4 GSP 20.7547
457 3DOE GTP 20.8333
458 2KIN ADP 21
459 1UPT GTP 21.0526
460 3AQ4 GDP 21.1957
461 6ECT SAM 21.2598
462 4M9Q GNP 21.2963
463 1KSH GDP 21.5054
464 1F6B GDP 21.7172
465 1D2E GDP 21.7593
466 1T5C ADP 22.0472
467 2ZPT A3P 22.0472
468 1MR3 G3D 22.0994
469 1HTW ADP 22.1519
470 1MKY GDP 22.2222
471 1O3Y GTP 22.2892
472 2J59 GTP 22.2892
473 1J2J GTP 22.2892
474 4YLG GDP 22.5434
475 1G7S GDP 22.8346
476 4KAX GTP 23.0769
477 1RE0 GDP 23.1707
478 1S9D GDP 23.1707
479 2A5F GTP 23.4286
480 2WIC GNP 23.6111
481 3FYH ADP 23.622
482 3EWA ANP 23.622
483 2RGX AP5 23.622
484 4OHY ANP 23.622
485 3QF7 ANP 24
486 3PCR GTP 24.0741
487 2R4V GSH 24.0741
488 3N5C GDP 24.6914
489 2W83 GTP 24.8485
490 4ZNL BEF ADP 25.9843
491 3A1S GDP 26.3889
492 6FAA ADP 26.7717
493 1M2O GNP 27.3684
494 4ZI2 GNP 28.4211
495 4GOJ GNP 28.5714
496 2QTV GNP 28.7425
497 2WKQ GTP 29.1667
498 1FZQ GDP 29.2818
499 3T12 GDP ALF 29.2929
500 3T1O GDP 29.2929
501 1YZG GDP 29.6089
502 2J0V GDP 29.717
503 1ZJ6 G3D 30.4813
504 5JCP GDP ALF 30.5556
505 4BAS GNP 31.1558
506 1GWN GTP 31.7073
507 2GCN GDP 31.8408
508 2GCO GNP 31.8408
509 1RYH GNP 32.5123
510 6BSX E7S 32.5843
511 6BSX GDP 32.5843
512 1DS6 GDP 33.3333
513 4V0K GDP 33.7278
514 1I4D GDP 33.8542
515 5DI3 GNP 34.0541
516 2W2X GSP 34.0541
517 1E96 GTP 34.375
518 3SBD GNP 34.7594
519 4D0N GDP 35.1351
520 6BCB GSP 35.1351
521 6BCA GSP 35.1351
522 6BC0 GSP 35.1351
523 4DID GDP 35.2332
524 1M7B GTP 35.3261
525 4ITR GDP 35.6021
526 3LXR GDP 35.6757
527 5HPY GDP 35.6757
528 2WMO GTP 35.7895
529 1G4U GDP 35.8696
530 4XOI GTP 36.1111
531 2FJU GSP 36.5169
532 4XSH GSP 36.8715
533 3T5G GDP 37.0166
534 1MH1 GNP 37.0968
535 5EE5 GTP 37.4269
536 4YC7 GNP 37.5691
537 1HE1 GDP 38.0682
538 1HE1 AF3 38.0682
539 5YT0 GDP 38.0952
540 1R4A GNP 38.7879
541 1ZD9 GDP 39.3617
542 4DKX GDP 41.6667
543 2F9L GDP 42.2111
544 2BCG GDP 42.233
545 5OCG GNP 42.328
546 2ZEJ GDP 42.3913
547 1OIX GDP 42.4084
548 4U5X GNP 42.6966
549 1OIV GDP 42.9319
550 2CJW GDP 43.75
551 5TAR GDP 43.7838
552 5TB5 GDP 43.7838
553 5UQW GDP 43.9153
554 3CPJ GDP 43.9815
555 2A9K GDP 44.9198
556 3TKL GTP 45.4082
557 1Z06 GNP 45.5026
558 3Q85 GNP 45.5621
559 3BC1 GNP 45.641
560 5UPK GNP 45.9459
561 2EW1 GNP 46.2687
562 4LX0 BEF GDP 46.3277
563 1VG8 GNP 46.3768
564 1VG0 GDP 46.3768
565 5JCZ GDP 46.9274
566 3Q72 GNP 46.988
567 1YZN GNP 47.027
568 3RWO GDP 47.027
569 2A5J GDP 47.1204
570 1X1R GDP 47.191
571 4K81 GTP 47.3684
572 2C5L GTP 47.3988
573 4C4P GNP 47.3988
574 1ZC3 GNP 47.4286
575 5LEF GTP 47.644
576 5SZH GNP 47.7833
577 5O2T GSP 47.929
578 1UAD GNP 48
579 3SFV GDP 48.6188
580 1CLU DBG 48.7952
581 2UZI GTP 48.7952
582 5E95 GDP 48.8095
583 1G16 GDP 48.8235
584 2HT6 GDP 48.8506
585 5OEC GDP 49.1803
586 3KUD GDP 49.3976
587 1U8Z GDP 49.4048
588 1Z0J GTP 49.4118
589 5O74 GDP 49.4444
590 1KY3 GDP 49.4506
591 1YVD GNP 49.7041
592 5WDR GNP 49.7076
593 2Y8E GNP 49.7207
594 3DDC GNP 50
Pocket No.: 2; Query (leader) PDB : 5BXQ; Ligand: GDP; Similar sites found with APoc: 38
This union binding pocket(no: 2) in the query (biounit: 5bxq.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 4WEI GLC GAL None
2 2PI8 NAG NAG NAG NAG NAG NAG 3.14961
3 3SXN COA 3.93701
4 1X8J A3P 4.16667
5 2JEV NHQ 4.72441
6 5T67 SAH 4.72441
7 3UYW TAU 4.72441
8 6DIO NAD 5.09259
9 4M52 FAD 5.51181
10 4Z87 GDP 5.51181
11 4Z0G 5GP 5.51181
12 2JK0 ASP 6.01852
13 2B4B COA 7.08661
14 2B4D COA 7.08661
15 2GWH A3P 7.87402
16 2VBQ BSJ 7.87402
17 1T8U UAP SGN IDS SGN 7.87402
18 1Q19 SSC 8.66142
19 3R7F CP 8.66142
20 3WR7 COA 8.66142
21 1Q19 APC 8.66142
22 1J99 AND 9.44882
23 1V8B NAD 9.44882
24 1TKB N1T 9.72222
25 5WQP NCA 10.2362
26 4ZY1 4U5 10.6481
27 5TVJ COA 11.0236
28 5TVJ 7LF 11.0236
29 4EUE NAI 11.0236
30 1T3D CYS 12.5984
31 5XOY LYS 12.5984
32 4D06 NAR 13.3858
33 5K04 COA 14.3519
34 4AVB ACO 14.9606
35 4TQK NAG 17.3228
36 2VZZ SCA 24.4094
37 4A62 ANP 25.9843
38 3L6C MLI 26.7717
Pocket No.: 3; Query (leader) PDB : 5BXQ; Ligand: GDP; Similar sites found with APoc: 7
This union binding pocket(no: 3) in the query (biounit: 5bxq.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 5T67 JHZ 4.72441
2 3WDM ADN 4.72441
3 2V58 LZJ 6.94444
4 1SAY PYR 7.08661
5 2P3V SRT 8.66142
6 1YBH FAD 10.2362
7 4Z24 FAD 11.0236
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