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Receptor
PDB id Resolution Class Description Source Keywords
5AZC 1.9 Å EC: 2.4.99.- CRYSTAL STRUCTURE OF ESCHERICHIA COLI LGT IN COMPLEX WITH PHOSPHATIDYLGLYCEROL ESCHERICHIA COLI INHIBITOR COMPLEX TRANSFERASE
Ref.: CRYSTAL STRUCTURE OF E. COLI LIPOPROTEIN DIACYLGLYC TRANSFERASE NAT COMMUN V. 7 10198 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PGT A:302;
A:305;
A:307;
A:310;
A:304;
A:308;
A:301;
A:309;
A:306;
A:303;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Atoms found LESS than expected: % Diff = 0;
Atoms found LESS than expected: % Diff = 0;
Atoms found LESS than expected: % Diff = 0;
Atoms found LESS than expected: % Diff = 0;
Atoms found LESS than expected: % Diff = 0;
Atoms found LESS than expected: % Diff = 0;
Atoms found LESS than expected: % Diff = 0;
none;
Atoms found LESS than expected: % Diff = 0;
Atoms found LESS than expected: % Diff = 0;
submit data
751.023 C40 H79 O10 P CCCCC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5AZC 1.9 Å EC: 2.4.99.- CRYSTAL STRUCTURE OF ESCHERICHIA COLI LGT IN COMPLEX WITH PHOSPHATIDYLGLYCEROL ESCHERICHIA COLI INHIBITOR COMPLEX TRANSFERASE
Ref.: CRYSTAL STRUCTURE OF E. COLI LIPOPROTEIN DIACYLGLYC TRANSFERASE NAT COMMUN V. 7 10198 2016
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 5AZB - BOG C14 H28 O6 CCCCCCCCO[....
2 5AZC - PGT C40 H79 O10 P CCCCCCCCCC....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 5AZB - BOG C14 H28 O6 CCCCCCCCO[....
2 5AZC - PGT C40 H79 O10 P CCCCCCCCCC....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 5AZB - BOG C14 H28 O6 CCCCCCCCO[....
2 5AZC - PGT C40 H79 O10 P CCCCCCCCCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PGT; Similar ligands found: 107
No: Ligand ECFP6 Tc MDL keys Tc
1 PGT 1 1
2 LHG 1 1
3 CD4 0.870968 0.954545
4 44G 0.868852 1
5 D3D 0.867647 0.977778
6 PGW 0.867647 0.977778
7 DR9 0.855072 0.977778
8 PGV 0.855072 0.977778
9 PGK 0.842857 0.93617
10 P6L 0.842857 0.977778
11 OZ2 0.830986 0.977778
12 DGG 0.808219 0.93617
13 CN3 0.771429 0.954545
14 PTY 0.746269 0.826923
15 PEV 0.746269 0.826923
16 PEH 0.746269 0.826923
17 8PE 0.746269 0.826923
18 PEF 0.746269 0.826923
19 CN6 0.742857 0.954545
20 P5S 0.73913 0.843137
21 PEE 0.735294 0.811321
22 9PE 0.735294 0.826923
23 HGX 0.714286 0.701754
24 PC7 0.714286 0.701754
25 LIO 0.714286 0.701754
26 PLD 0.714286 0.701754
27 HGP 0.714286 0.701754
28 6PL 0.714286 0.701754
29 3PH 0.703125 0.911111
30 7PH 0.703125 0.911111
31 LPP 0.703125 0.911111
32 6PH 0.703125 0.911111
33 F57 0.703125 0.911111
34 PX8 0.692308 0.888889
35 7P9 0.692308 0.911111
36 PX2 0.692308 0.888889
37 AGA 0.666667 0.955556
38 XP5 0.661972 0.701754
39 LOP 0.657895 0.811321
40 L9Q 0.657895 0.811321
41 6OU 0.657895 0.811321
42 PII 0.648649 0.84
43 CDL 0.647887 0.866667
44 PD7 0.646154 0.911111
45 P50 0.64557 0.807692
46 PSF 0.633803 0.843137
47 TGL 0.633333 0.659091
48 PCW 0.632911 0.689655
49 ZPE 0.620253 0.811321
50 PCK 0.617284 0.666667
51 M7U 0.616438 0.911111
52 D21 0.616438 0.891304
53 PIF 0.61039 0.823529
54 P3A 0.609756 0.934783
55 PIZ 0.6 0.803922
56 GP7 0.595238 0.811321
57 FAW 0.59375 0.704545
58 L2C 0.59375 0.704545
59 DGA 0.59375 0.704545
60 DDR 0.59375 0.704545
61 44E 0.590909 0.911111
62 PEK 0.590361 0.811321
63 IP9 0.5875 0.803922
64 52N 0.5875 0.823529
65 PIO 0.5875 0.823529
66 PSC 0.581395 0.689655
67 B7N 0.578313 0.823529
68 3PE 0.565789 0.75
69 MC3 0.551282 0.660714
70 PCF 0.551282 0.660714
71 PC1 0.551282 0.660714
72 GYM 0.539683 0.727273
73 1QW 0.539683 0.727273
74 PDK 0.537634 0.716667
75 LBR 0.535211 0.652174
76 LPC 0.526316 0.736842
77 LAP 0.526316 0.736842
78 LP3 0.526316 0.736842
79 PGM 0.520548 0.933333
80 PIE 0.517241 0.769231
81 T7X 0.516484 0.823529
82 NKO 0.507246 0.911111
83 NKN 0.507246 0.911111
84 2JT 0.5 0.666667
85 G2A 0.5 0.666667
86 EPH 0.5 0.811321
87 POV 0.494253 0.649123
88 L9R 0.494253 0.649123
89 S12 0.493976 0.807692
90 SQD 0.482759 0.640625
91 CN5 0.481013 0.933333
92 OLB 0.472222 0.711111
93 OLC 0.472222 0.711111
94 42H 0.470588 0.724138
95 DGD 0.467391 0.618182
96 1O2 0.456522 0.6
97 MVC 0.452055 0.711111
98 3TF 0.451613 0.6
99 NKP 0.448718 0.891304
100 PCJ 0.44186 0.607143
101 78N 0.438356 0.711111
102 78M 0.438356 0.711111
103 DLP 0.43617 0.649123
104 1L2 0.42 0.6
105 DB4 0.402439 0.764706
106 PBU 0.4 0.764706
107 GGD 0.4 0.607143
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5AZC; Ligand: PGT; Similar sites found with APoc: 153
This union binding pocket(no: 1) in the query (biounit: 5azc.bio1) has 32 residues
No: Leader PDB Ligand Sequence Similarity
1 1NU4 MLA None
2 1UO5 PIH None
3 2VWA PTY None
4 3KO0 TFP None
5 1HBK COA None
6 4WG0 CHD None
7 1BWO LPC None
8 1L0I PSR None
9 4V2O CLQ None
10 2QZT PLM None
11 6AYI C3G None
12 3G58 988 0.666667
13 4OAR 2S0 1.55039
14 5OLK DTP 1.66667
15 3ROE THM 1.88679
16 1R6N 434 1.89573
17 3KP6 SAL 1.98676
18 5CX8 TG6 2
19 4UHL VFV 2
20 1AUA BOG 2.02703
21 1NQ7 HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU 2.04918
22 3RV5 DXC 2.24719
23 1SJD NPG 2.33333
24 6B21 C9V 2.33333
25 1M2Z BOG 2.33463
26 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 2.38095
27 4HBM 0Y7 2.5
28 4O4Z N2O 2.5974
29 3FS1 ALA ALA LEU ALA ALA LEU LEU ALA ALA 2.6087
30 5L7G LYS SER LEU LEU GLN GLN LEU LEU THR GLU 2.62295
31 3E70 GDP 2.66667
32 4K10 NI9 2.66667
33 2JC9 ADN 2.66667
34 1P72 THM 2.66667
35 5DXG EST 2.68199
36 5DX3 EST 2.68199
37 5WGQ EST 2.68199
38 5DXE EST 2.68199
39 5WGD EST 2.68199
40 3BPX SAL 2.7027
41 2QA8 GEN 2.71318
42 2QZO KN1 2.71318
43 5HYR EST 2.71318
44 4MG9 27K 2.7451
45 4MGA 27L 2.7451
46 1X0P FAD 2.7972
47 4OGN 2U5 2.85714
48 4J24 EST 2.91667
49 4J26 EST 2.91667
50 5IM3 DTP 3
51 4UOZ GLA 3
52 4Q0A 4OA 3
53 1LOX RS7 3
54 3V1S 0LH 3
55 2CIX CEJ 3.01003
56 4RJD TFP 3.0303
57 4OAS 2SW 3.125
58 5C1M OLC 3.2
59 4MRP GSH 3.33333
60 5D3U TRP 3.33333
61 1O6U PLM 3.33333
62 5HCN DAO 3.44828
63 3T03 3T0 3.52113
64 4LWU 20U 3.52941
65 5UC9 MYR 3.53982
66 5DCH 1YO 3.64583
67 4XCP PLM 3.66667
68 3X01 AMP 3.66667
69 1J78 VDY 3.66667
70 4UCC ZKW 3.86266
71 2F7A BEZ 3.87931
72 4WGF HX2 3.90244
73 5CXI 5TW 3.94089
74 5OCA 9QZ 3.96825
75 6BR8 PGV 3.96825
76 3HP9 CF1 4
77 1YXM ADE 4
78 2Z9I GLY ALA THR VAL 4.01235
79 3G4Q MCH 4.10959
80 5U9J GER 4.14201
81 5VRH OLB 4.21456
82 5IUY BOG 4.33333
83 2GWH PCI 4.36242
84 5LX9 OLB 4.66667
85 5UV1 0FV 4.66667
86 4OB6 S2T 4.66667
87 2HZL PYR 4.66667
88 2RH1 CLR 4.66667
89 2YLD CMO 4.72441
90 2I74 MAN MAN MAN MAN 4.7619
91 3OGN 3OG 4.83871
92 6BR9 6OU 5
93 6BR9 PGV 5
94 4BTB PRO PRO PRO PRO PRO PRO PRO PRO PRO 5.02092
95 4V3I ASP LEU THR ARG PRO 5.05837
96 5XNA SHV 5.07246
97 5CHR 4NC 5.10949
98 2BHW NEX 5.17241
99 4IA6 EIC 5.33333
100 1MID LAP 5.49451
101 3R9V DXC 5.59441
102 4URX FK1 5.66667
103 6BVI EC4 5.66667
104 6BVJ EAS 5.66667
105 6BVL EBY 5.66667
106 1U25 IHS 5.66667
107 2BCG GER 5.82524
108 5V3Y 5V8 5.94406
109 3TL1 JRO 6.28931
110 4M51 BEZ 6.33333
111 5OSW DIU 6.33333
112 5LWY OLB 6.54206
113 4Q6R 30J 6.66667
114 4GN8 ASO 6.68896
115 3KRO PPV 6.77966
116 1DTL BEP 6.8323
117 1T0S BML 6.97674
118 3SQP 3J8 7
119 5W7B MYR 7.33333
120 1L6O SER LEU LYS LEU MET THR THR VAL 7.36842
121 5XJ7 87O 7.46269
122 5X80 SAL 7.5
123 3GF2 SAL 7.53425
124 5FPN KYD 7.66667
125 1H0A I3P 8.22785
126 3B9Z CO2 8.66667
127 2WOR 2AN 9
128 3PEV IHP 9.04255
129 1NF8 BOG 9.66184
130 1MT1 AG2 9.73451
131 6CGN DA 10
132 4YSX E23 10.2564
133 5TVI MYR 10.8696
134 6CB2 OLC 10.9215
135 2O5L MNR 11.3333
136 1XZ3 ICF 12.069
137 5VGS 9A7 12.1019
138 2OZ5 7XY 12.5
139 3O01 DXC 13
140 5C9J DAO 13.1313
141 5WL1 CUY 13.1313
142 3HUJ AGH 13.1313
143 4F4S EFO 13.1579
144 5V4R MGT 14.1975
145 1J6X MET 14.375
146 4DOO DAO 15.122
147 6BJO DUY 16.8
148 1RV1 IMZ 18.8235
149 1M48 FRG 20.3008
150 5Z84 CHD 23.7288
151 5ZCO PEK 23.7288
152 4OGQ 7PH 38.2353
153 4OGQ 1O2 38.2353
Pocket No.: 2; Query (leader) PDB : 5AZC; Ligand: PGT; Similar sites found with APoc: 43
This union binding pocket(no: 2) in the query (biounit: 5azc.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 3AQT RCO 1.63265
2 1RL4 BL5 2.12766
3 4XNV BUR 2.33333
4 2O1S TDP 2.33333
5 4RJK TPP 2.33333
6 6GVZ CHO 2.66667
7 5B47 TPP 3
8 5U97 PIT 3.33333
9 5NTP 98E 3.36134
10 3ABA FLI 3.66667
11 1KOL NAD 3.66667
12 3WCA FPS 3.66667
13 1GPE FAD 3.66667
14 2ZCQ B65 3.75427
15 1ZED PNP 4
16 3AI7 TPP 4
17 5B48 TDN 4
18 1OKC CXT 4.0404
19 4C9G CXT 4.33333
20 5M36 9SZ 4.36681
21 5LX9 OLA 4.66667
22 1VMK GUN 5.05415
23 1RP7 TZD 5.33333
24 1UMD TDP COI 6
25 6H3O FAD 6.33333
26 5LWY OLA 6.54206
27 4XFR CIT 7
28 3DVA TPW 7.33333
29 1I0B PEL 8.66667
30 4K5S PM0 8.66667
31 1CZA ADP 9.33333
32 4JN6 OXL 10
33 5TVI O8N 10.8696
34 3F8C HT1 12.6984
35 2Y69 CHD 17.5
36 5ZCO CHD 23.7288
37 5W97 CHD 23.7288
38 2DYS PGV 23.7288
39 2DYR PGV 23.7288
40 5Z84 PGV 23.7288
41 5ZCO PGV 23.7288
42 4ZGM 32M 25.8065
43 4OGQ UMQ 38.2353
Pocket No.: 3; Query (leader) PDB : 5AZC; Ligand: PGT; Similar sites found with APoc: 177
This union binding pocket(no: 3) in the query (biounit: 5azc.bio1) has 71 residues
No: Leader PDB Ligand Sequence Similarity
1 1HBK MYR None
2 4I67 G G G RPC None
3 1CMC SAM None
4 2WPW ACO 1
5 4JE7 BB2 1.01523
6 3B99 U51 1.33333
7 1SBR VIB 1.5
8 1E4I NFG 1.66667
9 3M31 FAD 1.66667
10 4XB4 45D 1.97368
11 3NB0 G6P 2
12 4O6M C5P 2
13 4G2R H1L 2
14 3IL6 B83 2
15 3B1F NAD 2.06897
16 1NHZ 486 2.14286
17 1TIQ COA 2.22222
18 2VL8 UDP 2.33333
19 4P6X HCY 2.35294
20 6C1R EFD 2.36967
21 6BA2 7KM 2.37288
22 4G86 BNT 2.46479
23 3OLL EST 2.5
24 3U3U EAH 2.57511
25 1YYE 196 2.61194
26 4DE3 DN8 2.6616
27 1PFK ADP 2.66667
28 2HHP FLC 2.66667
29 3P5P A3C 2.66667
30 5ZI9 FLC 2.69231
31 4U82 FPS 2.73438
32 4MGD 27N 2.7451
33 4MGB XDH 2.7451
34 2BJ4 OHT 2.77778
35 4TV1 36M 2.78884
36 3UUD EST 2.78884
37 4WT2 3UD 2.85714
38 4KYQ FLC 2.88462
39 4OIC A8S 2.89855
40 1UUY PPI 2.99401
41 1TV5 N8E 3
42 5Z5I XYP 3
43 4Q0A GLY HIS LYS ILE LEU HIS ARG LEU LEU GLN 3
44 5Y79 3PG 3
45 3EE4 MYR 3
46 3SE5 ANP 3.04878
47 1TMX HGX 3.07167
48 4IBF 1D5 3.10078
49 5UC1 486 3.15315
50 5B4B LP5 3.22581
51 2WPX ACO 3.24484
52 5YZC 95C 3.33333
53 3HPY MCT 3.33333
54 2Q8M AMP 3.33333
55 5H81 NAP 3.33333
56 3JRS A8S 3.36538
57 1TL2 NDG 3.38983
58 5V13 JH3 3.47222
59 1K7L 544 3.47222
60 3RDE OYP 3.4904
61 3SP6 IL2 3.50877
62 1YOK P6L 3.51562
63 2D2F ADP 3.6
64 3KDU NKS 3.61011
65 1XX6 ADP 3.66492
66 1J78 OLA 3.66667
67 5X20 AOT 3.66667
68 1ZPD CIT 3.66667
69 3G4G D71 3.66667
70 2GMH UQ5 3.66667
71 3G9E RO7 3.69004
72 2NPA MMB 3.7037
73 1RDT 570 3.71901
74 6EXO C3E 3.72093
75 3FEI CTM 3.74532
76 5K52 OCD 3.77358
77 1FM9 570 3.78151
78 4DS8 A8S 3.82775
79 5FUS DAO 3.83275
80 4US3 TRP 3.95604
81 6BR8 6OU 3.96825
82 2JHP GUN 4
83 2O1V ADP 4
84 3B96 MYA 4
85 6F6E PLM 4
86 5CYV WCA 4.10959
87 3WR7 COA 4.11765
88 5IJJ I6P 4.16667
89 1UHK CZN 4.18848
90 3TDC 0EU 4.33333
91 3L0E G58 4.33333
92 3S6X SIA GAL BGC 4.33333
93 6C0B PAM 4.33333
94 1W55 GPP 4.33333
95 3G5K BB2 4.37158
96 3GWN FAD 4.38596
97 5HGZ ACO 4.52675
98 1H9G COA MYR 4.52675
99 3IPQ 965 4.59364
100 4NTO 1PW 4.66667
101 3W5N RAM 4.66667
102 3QKD HI0 4.97238
103 3KC1 2T6 5
104 1UBY DMA 5
105 2JJK R15 5
106 3KFC 61X 5.13834
107 2BHW XAT 5.17241
108 3KMZ EQO 5.26316
109 1BW9 NAD 5.33333
110 1ATL 0QI 5.44554
111 5HH0 COA 5.5
112 6GD6 EVB 5.55556
113 5AMH EF2 5.6
114 1GHE ACO 5.64972
115 1ZEI CRS 5.66038
116 1U26 IHS 5.66667
117 4ZW9 GLC 5.66667
118 4ZW9 BGC 5.66667
119 2PRG BRL 5.68182
120 5J6A P46 5.75
121 4RHP PEF 5.95745
122 1DKF BMS 5.95745
123 2QJY SMA 6
124 2QQC AG2 6.25
125 4B5W PYR 6.25
126 6DIO CIT 6.33333
127 5OSW AE4 6.33333
128 1XVB 3BR 6.47059
129 5UGW GSH 6.85714
130 4V1F BQ1 6.97674
131 4NB5 2JT 7.01754
132 2B4D COA 7.01754
133 2HFP NSI 7.0922
134 1Q2C COA 7.40741
135 4XU6 TDA 7.61905
136 4RC8 STE 7.65766
137 1XMY ROL 7.66667
138 1XMU ROF 7.66667
139 1XM4 PIL 7.66667
140 5UC4 83S 7.72727
141 2WPB ZZI 8
142 5MTE BB2 8.0292
143 4UA3 COA 8.24742
144 4KVL PLM 8.33333
145 2IU8 PLM 8.33333
146 3GWL FAD 8.49057
147 3B6C SDN 8.54701
148 5MWE TCE 8.57143
149 5N8V KZZ 8.69565
150 2AMT GPP 8.80503
151 6BMS POV 9
152 2QV7 ADP 9
153 5ZBK AMP 9.85222
154 2IBZ SMA 10.2362
155 3CX5 SMA 10.3175
156 1EZV SMA 10.4
157 3IX9 MTX 10.5263
158 2ALG DAO 11.9565
159 2ALG HP6 11.9565
160 5E70 RCD 12
161 2X65 M1P 12.2024
162 5K53 STE 13.7405
163 3CXH SMA 14.2857
164 6GL8 F3Q 14.5349
165 3KIF GDL 15.0943
166 1N8V BDD 15.1786
167 2C94 TSF 15.625
168 2DYR TGL 23.7288
169 5Z84 TGL 23.7288
170 2DYS TGL 23.7288
171 5ZCO TGL 23.7288
172 3L9R L9Q 24.4898
173 5NNT DPV 29.7297
174 3KPE TM3 30.7692
175 1LNX URI 32.0988
176 4OGQ SQD 38.2353
177 4OGQ 2WD 38.2353
Pocket No.: 4; Query (leader) PDB : 5AZC; Ligand: PGT; Similar sites found with APoc: 368
This union binding pocket(no: 4) in the query (biounit: 5azc.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 5MT9 ARG None
2 5MT9 SRO None
3 4YV5 SVR None
4 2OKL BB2 None
5 5Z1N PEF None
6 5X4Q 7Z6 None
7 1XON PIL 0.666667
8 5N5U 7N8 1
9 5N5U AMP 1
10 5IF4 6AK 1.25786
11 2Q2Y MKR 1.33333
12 2Q2Y ADP 1.33333
13 5Y24 GLY MET PRO ARG GLY ALA 1.33333
14 1SR7 MOF 1.5444
15 2HJ3 FAD 1.6
16 2Q1H AS4 1.6
17 3G5N PB2 1.66667
18 2PX6 DH9 1.66667
19 3QCP FAD 1.66667
20 4QWT ACD 1.66667
21 2VAT COA 1.66667
22 5F1R 42O 1.68776
23 4D7M TDC 1.84332
24 3QMK SGN IDS SGN IDS 1.86916
25 3P0K FAD 1.8797
26 1N4H REA 1.9305
27 2Z7I 742 2
28 4ZBR DIF 2
29 4ZBR NPS 2
30 2WSA MYA 2
31 2WSA 646 2
32 2HKJ RDC 2
33 5EK3 5PK 2
34 3D9F N6C 2
35 3D9F FAD 2
36 4J7Q B7N 2
37 1NQ7 ARL 2.04918
38 5G5W R8C 2.14286
39 3JUQ AKD 2.16216
40 3JUQ AJD 2.16216
41 4UDB CV7 2.20588
42 4KBS PX2 2.32558
43 4OIV XX9 2.33333
44 1BUC CAA 2.33333
45 4UWJ MYA 2.33333
46 4UWJ 7L5 2.33333
47 3OKI OKI 2.33333
48 5W7D PX8 2.33333
49 3HR1 PF9 2.33333
50 2E9L BGC 2.33333
51 2E9L PLM 2.33333
52 4GU5 FAD 2.33333
53 3RUU 37G 2.33333
54 4Z24 FAD 2.33333
55 3DCT 064 2.33333
56 1EU1 MGD 2.33333
57 3BEJ MUF 2.33333
58 3F3E LEU 2.33333
59 5N9T 8QQ 2.33333
60 1M2Z DEX 2.33463
61 5HCV 60R 2.33463
62 3T50 FMN 2.34375
63 4XIZ LPP 2.35294
64 4JHG ZEA 2.38095
65 5DRB 5FJ 2.4055
66 4ELG 52I 2.40964
67 4ELG 52J 2.40964
68 4OHU NAD 2.42215
69 4OHU 2TK 2.42215
70 6MPT C30 2.44755
71 3SFI 3SF 2.54237
72 1N83 CLR 2.59259
73 5MWY YNU 2.62295
74 5L7G 6QE 2.62295
75 5DUF G7A 2.6616
76 1IYK MYA 2.66667
77 4OYA 1VE 2.66667
78 2OBD 2OB 2.66667
79 2OBD PCW 2.66667
80 4M73 M72 2.66667
81 5EEH P9P 2.66667
82 4M73 SAH 2.66667
83 3Q8G PEE 2.66667
84 3MPI GRA 2.66667
85 4JZX 476 2.66667
86 5NDF UDP 2.66667
87 5NWI TYR PHE SER SEP ASN 2.67176
88 3WDM ADN 2.68199
89 5DEY 59T 2.6936
90 4XCL AGS 2.7027
91 2I0G I0G 2.72374
92 4TUZ 36J 2.7451
93 4MG7 27H 2.7451
94 4MG8 27J 2.7451
95 5AAV GW5 2.77778
96 5NI5 8YB 2.77778
97 2QE4 JJ3 2.82258
98 1U3R 338 2.90456
99 2YJD YJD 2.91667
100 6ESN BWE 2.99625
101 2FXU BID 3
102 6HH6 A3R 3
103 2FV5 541 3
104 2BIF BOG 3
105 4IGH FMN 3
106 4IGH 1EA 3
107 4IGH ORO 3
108 5LGA 6VH 3
109 5E7V M7E 3
110 2C9E PID 3
111 4I4B 1CV 3
112 3W54 RNB 3
113 5G57 6M5 3
114 4WPF 3SN 3.0303
115 4B7P 9UN 3.04348
116 3VHZ L2P GLC MAN SGA 3.05344
117 3VHZ SOG 3.05344
118 2YI0 YI0 3.05677
119 6FX0 E9T 3.0837
120 5NTW 98N 3.11284
121 1XQP 8HG 3.125
122 2EV1 OLA 3.15315
123 1OQC FAD 3.2
124 5C1M CLR 3.2
125 2QHD DAO 3.27869
126 1EWF PC1 3.33333
127 4L1F COS 3.33333
128 5WIU AQD 3.33333
129 1OLM VTQ 3.33333
130 2J1P GRG 3.41297
131 3ET3 ET1 3.42466
132 4INB 1F6 3.42466
133 5JF2 SF7 3.43137
134 3ET1 ET1 3.43643
135 3LLI FAD 3.44828
136 5K7H IVC 3.4632
137 1DB1 VDX 3.4749
138 5IXK 6EW 3.50877
139 2E3N 6CM 3.52941
140 1YUC EPH 3.52941
141 2EI4 22B 3.55731
142 1G27 BB1 3.57143
143 4OMJ 2TX 3.59712
144 3VVY ET 3.60825
145 2P4Y C03 3.61011
146 3GN8 DEX 3.61446
147 4GCZ FMN 3.63636
148 5OHJ 9VE 3.66667
149 3COW 52H 3.66667
150 5C2H 4PX 3.66667
151 1N1G BCP 3.66667
152 5C2H 4XU 3.66667
153 2H7C COA 3.66667
154 3T58 FAD 3.66667
155 6FS0 E4W 3.66972
156 3FUR Z12 3.67647
157 1T27 PCW 3.69004
158 3I51 6PL 3.7037
159 6GG9 FMN 3.7037
160 3GZ9 D32 3.71747
161 4IS0 1R4 3.73444
162 3JZB 4HY 3.74532
163 4NAT ADP 3.75
164 3V49 PK0 3.7594
165 5DLY 5D7 3.7594
166 6A5Y 9CR 3.78151
167 2BL9 CP6 3.78151
168 1FM9 9CR 3.78151
169 6A5Y 9R0 3.78151
170 1PZO CBT 3.80228
171 4ZAL 4LR 3.82775
172 4ZAL FNR 3.82775
173 3O76 GTB 3.82775
174 3IS2 FAD 3.8961
175 4POJ 2VP 3.8961
176 4M8E 29V 3.8961
177 2RKN LP3 3.8961
178 2AX9 BHM 3.90625
179 3H0A D30 3.94737
180 4DV8 0LX 4
181 4EOX 0S5 4
182 2P1C GG3 4
183 5HSA FAS 4
184 1BGQ RDC 4
185 3D72 FAD 4.02685
186 4WUJ FMN 4.08163
187 3ETG GTP 4.19162
188 3ETG NDP 4.19162
189 3ETG GLU 4.19162
190 1JR8 FAD 4.2735
191 3E2M E2M 4.32432
192 5LXT GDP 4.33333
193 2C31 TZD 4.33333
194 2C31 ADP 4.33333
195 2Q6B HR2 4.33333
196 4P42 PEE 4.33333
197 4M0R 644 4.33333
198 2XSU PIE 4.33333
199 1YMT DR9 4.47154
200 5ECP JAA 4.4843
201 5ECP MET 4.4843
202 1WS1 BB2 4.48718
203 1YP0 PEF 4.60251
204 5X5M 7YU 4.62963
205 1NP7 FAD 4.66667
206 5HGR 45D 4.66667
207 3T6E UQ9 4.66667
208 3T6E MQ9 4.66667
209 3FAL REA 4.88722
210 3FAL LO2 4.88722
211 2D5Z L35 4.96454
212 4ZVV GN0 5
213 1M13 HYF 5
214 4ZVV NAD 5
215 1RX0 2MC 5
216 5LIA 6XN 5
217 1NRL SRL 5
218 2XCG XCG 5
219 1BII ARG GLY PRO GLY ARG ALA PHE VAL THR ILE 5.04202
220 3E85 BSU 5.06329
221 3NHT U46 5.06757
222 2GFD RDA 5.08475
223 2O4J VD4 5.13699
224 2BHW LUX 5.17241
225 3GKJ HC3 5.17241
226 2UXI G50 5.2381
227 2LBD REA 5.24345
228 3KMR EQN 5.26316
229 4LY9 S6P 5.33333
230 4LY9 1YY 5.33333
231 2J8C U10 5.33808
232 2J8C SPO 5.33808
233 5DKK FMN 5.51724
234 3VRV YSD 5.53506
235 5XPL 8C9 5.53506
236 5W7U GY8 5.58376
237 4DM8 REA 5.61798
238 1XAP TTB 5.61798
239 3QLM PLM 5.64516
240 4YNU FAD 5.66667
241 3Q9T FAY 5.66667
242 4DXJ 0M9 5.66667
243 4DXJ IPE 5.66667
244 3EWK FAD 5.72687
245 1N46 PFA 5.81395
246 4IAE 1DX 5.82011
247 5BQI 4UL 5.84416
248 5BQI GSH 5.84416
249 1NTV ASN PHE ASP ASN PRO VAL TYR ARG LYS THR 5.92105
250 1FCZ 156 5.95745
251 1DKF OLA 5.95745
252 4PJT 2YQ 6
253 5IVX ARG GLY PRO GLY ARG ALA PHE VAL THR ILE 6
254 4MIB 28M 6
255 3GDN FAD 6
256 3GDN HBX 6
257 1FCH TYR GLN SER LYS LEU 6
258 5B25 4QJ 6
259 1ZT1 PHE GLU ALA ASN GLY ASN LEU ILE 6
260 4MA7 P2Z 6.14035
261 1Q1Y BB2 6.28272
262 5CSD ACD 6.28931
263 4KCF AKM 6.33333
264 3LN0 52B 6.33333
265 3TGE TGE 6.44172
266 1XVB BHL 6.47059
267 2E2R 2OH 6.55738
268 6D28 NEC 6.59341
269 2A1L PCW 6.66667
270 5U1M ACE LEU TYR ALA SER SER ASN PRO ALA PTR 6.66667
271 5V03 658 6.86275
272 5LOF 70R 7
273 2XXP DSL 7
274 1LQY BB2 7.06522
275 3SCM LGN 7.07071
276 3QUZ QUV 7.07071
277 3G08 FEE 7.07071
278 1LEK GLU GLN TYR LYS PHE TYR SER VAL 7.07071
279 3RUG DB6 7.07071
280 1MHC FME TYR PHE ILE ASN ILE LEU THR LEU 7.07071
281 3E3U NVC 7.1066
282 3IIS PID 7.28477
283 4C2X NHW 7.33333
284 1JQI CAA 7.33333
285 3V66 D3A 7.33333
286 3AHQ FAD 7.33333
287 5W7B PA1 PO4 FTT FTT GCS FTT PO4 KDO MYR 7.33333
288 5X13 HC4 7.44681
289 4B5P ACO 7.5
290 3GWT 066 7.66667
291 3E8T UQ8 7.72727
292 1IID NHM 7.81991
293 1FO0 ILE ASN PHE ASP PHE ASN THR ILE 8.03571
294 6CHP F0Y 8.07453
295 4PGK Y69 8.19672
296 3QVP FAD 8.33333
297 4IVG ANP 8.33333
298 4IPE ANP 8.33333
299 5B0W 22B 8.59107
300 3MBG FAD 8.63309
301 1UVC STE 8.79121
302 1U3G THF 8.99471
303 4I6G FAD 9
304 6BMS PLM 9
305 3LDW ZOL 9
306 2X5W K2B 9.09091
307 1T8U UAP SGN IDS SGN 9.19118
308 3KXC PLM 9.27835
309 1ELW GLY PRO THR ILE GLU GLU VAL ASP 9.32203
310 5ETJ IM5 9.33333
311 4MNS 2AX 9.43396
312 3U5S FAD 9.52381
313 3O55 FAD 9.6
314 1XW6 GSH 9.63303
315 5SVV FMN 10.219
316 2IBZ UQ6 10.2362
317 5OVV ACE ILE GLU SER THR GLU ILE 10.5691
318 1FK5 OLA 10.7527
319 2A06 SMA 11.2903
320 3WYJ H78 11.4625
321 3LEO GSH 11.6129
322 5OLZ T4E 11.6667
323 2EVL GAL SPH EIC 11.9617
324 3BJC WAN 12.3333
325 6GMN F4E 12.5
326 2CB8 MYA 12.6437
327 5MU6 MYA 12.6667
328 5MU6 KFK 12.6667
329 4R38 RBF 12.8571
330 4CVZ TYR GLU LEU ASP GLU LYS PHE ASP ARG LEU 13
331 5WL1 D3D 13.1313
332 5T70 THR SER ASN LEU GLN GLU GLN ILE GLY TRP 13.1313
333 5C9J STE 13.1313
334 5U98 1KX 13.1313
335 2FKW RG1 13.2075
336 2YNE NHW 13.3333
337 2YNE YNE 13.3333
338 2YNC YNC 13.3333
339 2GJ3 FAD 13.3333
340 3RWP ABQ 13.6667
341 3EYK EYK 13.6667
342 5ISZ GLY ILE LEU GLY PHE VAL PHE THR LEU 14.9091
343 1GNI OLA 16.3333
344 5KAU RHQ 16.9697
345 2JBZ COA 17.4825
346 5OM2 DXT 17.5
347 2Z6D FMN 18.4615
348 4X6F 3XU 21.9048
349 2DYS PSC 23.7288
350 5ZCO PSC 23.7288
351 5Z84 PSC 23.7288
352 5Z84 PEK 23.7288
353 2DYR PEK 23.7288
354 2DYS PEK 23.7288
355 4F7E 0SH 24.4898
356 3L9R L9R 24.4898
357 2FYU FDN 28.5714
358 6GH1 ARG LEU PRO ALA LYS ALA PRO LEU LEU 29
359 4WO4 JLS 29
360 3QFJ LEU LEU PHE GLY PHE PRO VAL TYR VAL 29
361 5C0C ARG GLN PHE GLY PRO ASP TRP ILE VAL ALA 29
362 1OGA GLY ILE LEU GLY PHE VAL PHE THR LEU 29
363 5JHD GLY ILE LEU GLY PHE VAL PHE THR LEU 29
364 1KJM ALA GLN PHE SER ALA SER ALA SER ARG 29
365 5XS3 VAL ARG SER ARG ARG CYS LEU ARG LEU 29.5918
366 3B1M KRC 36.8421
367 4OGQ 2WM 38.2353
368 5TWO 7MV 46.6667
369 5UNJ RJW 50
370 4QJR PIZ 50
Pocket No.: 5; Query (leader) PDB : 5AZC; Ligand: PGT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 5azc.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 5AZC; Ligand: PGT; Similar sites found with APoc: 37
This union binding pocket(no: 6) in the query (biounit: 5azc.bio1) has 73 residues
No: Leader PDB Ligand Sequence Similarity
1 5CX6 CDP 1.33333
2 6A0S NDP 2.33333
3 1UH4 GLC 2.33333
4 5JO1 6LM 2.66667
5 3FIU POP 2.81124
6 4GAH 0ET 2.87081
7 2WDA L42 3
8 4X1B MLI 3
9 3B6O TMP 3.23887
10 1FP1 HCC 3.33333
11 6GBV FMN 3.42466
12 6A46 DCM 3.51562
13 2CJW GDP 3.64583
14 6CS8 F9Y 3.66667
15 2R75 01G 4
16 5M37 9SZ 4.34783
17 4DK7 0KS 5.26316
18 4QC6 30N 5.33333
19 4QVX 3CQ 5.38922
20 3HOK Q80 5.5794
21 4WQ2 3SU 5.78035
22 1YKI FMN 5.99078
23 1GOT GDP 6
24 4WBD CIT 6.33333
25 3NKS ACJ 6.33333
26 4M52 M52 6.66667
27 2GTE VA 7.25806
28 3KDJ A8S 7.33333
29 4H6U ACO 8
30 2V0U FMN 8.21918
31 5EFW FMN 8.27586
32 3RMK BML 8.43373
33 2Z6C FMN 8.52713
34 3ITJ CIT 9
35 2DQA NAG NAG NAG 10.4839
36 5DJT FMN 11.4754
37 5K04 COA 22.9412
Pocket No.: 7; Query (leader) PDB : 5AZC; Ligand: PGT; Similar sites found with APoc: 12
This union binding pocket(no: 7) in the query (biounit: 5azc.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 5EW9 5VC 2.21402
2 4ORM ORO 3
3 4ORM 2V6 3
4 4ORM FMN 3
5 1JF0 CZH 3.58974
6 5UWA 8ND 4.4335
7 1QV1 CZH 4.61538
8 5Y02 HBX 5.60748
9 4MOP 2H5 7
10 2BW7 ECS 7.76256
11 3R35 4CO 9.93377
12 2WPF WPF 12.6667
Pocket No.: 8; Query (leader) PDB : 5AZC; Ligand: PGT; Similar sites found with APoc: 20
This union binding pocket(no: 8) in the query (biounit: 5azc.bio1) has 66 residues
No: Leader PDB Ligand Sequence Similarity
1 1X87 NAD 2
2 1Y3A GDP 2.33333
3 3I6B KDO 2.77778
4 2ZFU SAH 3.25581
5 4OKD GLC GLC GLC 3.33333
6 1OFU GDP 3.33333
7 3NMV PYV 3.93258
8 1ZGS XMM 4.66667
9 1ZCB GDP 4.66667
10 3A06 FOM 4.66667
11 2JFN UMA 5.61404
12 1LSS NAD 5.71429
13 4COL DTP 6
14 2V57 PRL 6.84211
15 4ZU3 4SD 7.04846
16 3KUD GDP 7.40741
17 4JLS 3ZE 9.21053
18 3GQT UFO 9.33333
19 5C2N NAG 10.4167
20 1FQJ GDP 19.0476
Pocket No.: 9; Query (leader) PDB : 5AZC; Ligand: PGT; Similar sites found with APoc: 11
This union binding pocket(no: 9) in the query (biounit: 5azc.bio1) has 74 residues
No: Leader PDB Ligand Sequence Similarity
1 2BOS GLA GAL GLC NBU None
2 2BOS GLA GAL GLC None
3 4QO5 NAG 1.33333
4 1G2N EPH 2.27273
5 4RW3 PLM 2.33333
6 1M21 PHE CSI LEU PHA 2.33333
7 4LA7 A1O 3.62694
8 6EXS C3H 3.66667
9 2CNT COA 6.25
10 1P1M MET 8
11 5ZBL AMP 10.8374
Pocket No.: 10; Query (leader) PDB : 5AZC; Ligand: PGT; Similar sites found with APoc: 123
This union binding pocket(no: 10) in the query (biounit: 5azc.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1JGS SAL None
2 6EVN PRO PRO GLY PRO ALA GLY PRO PRO GLY None
3 5G3N X28 None
4 1UO4 PIH None
5 4DR9 BB2 1.04167
6 1GEG GLC 1.5625
7 5IKH 6BW 1.66667
8 2O4C NAD 1.66667
9 2C6Q NDP 2
10 1P0F NAP 2
11 2C6Q IMP 2
12 2HI4 BHF 2.33333
13 5DN9 NAD 2.33333
14 4RW3 TDA 2.33333
15 1S17 GNR 2.33333
16 5U83 ZN8 2.35849
17 6C7D EOJ 2.63158
18 3CGD COA 2.66667
19 3CGD NAD 2.66667
20 3CGD FAD 2.66667
21 2WH8 II2 2.66667
22 4I90 CHT 2.66667
23 5OPM DTP 2.66667
24 1R5L VIV 2.67176
25 1J54 TMP 2.68817
26 3RET SAL 2.9703
27 3RET PYR 2.9703
28 1EM6 CP4 3
29 2AMV BIN 3
30 3PVT 3HC 3
31 1W96 S1A 3
32 2GBB CIT 3.20513
33 4RYV ZEA 3.22581
34 2YOO K2B 3.33333
35 4YRY NAD 3.33333
36 2VHW NAI 3.33333
37 3FSY SCA 3.33333
38 5NM7 GLY 3.38346
39 5YJF 8WO 3.52113
40 5YJF SAH 3.52113
41 4DW4 U5P 3.59281
42 3KV8 FAH 3.59712
43 4Q9M FPP 3.65854
44 4N4J HG1 3.66667
45 5MBC FMN 3.66667
46 6CI7 ACP 3.66667
47 1ZDU P3A 3.67347
48 3K5I AIR 3.72208
49 5LJ0 6XX 3.84615
50 4O1Z MXM 4
51 5DY5 5GR 4
52 1HK8 DGT 4
53 4GBD MCF 4
54 4O4K 2PK 4
55 4WZH FMN 4
56 4R29 SAM 4.01786
57 2OBF F83 4.15225
58 2OBF SAH 4.15225
59 3KA2 2NC 4.4335
60 6AYH C3G 4.47761
61 4M4Q 21A 4.56432
62 2RH1 CAU 4.66667
63 3NTA COA 4.66667
64 3NT6 COA 4.66667
65 4WVO 3UZ 4.97238
66 5ZM0 FAD 5
67 3NTD COA 5
68 4NKW PLO 5
69 5H94 LYS MET ASN THR GLN PHE THR ALA VAL 5.10204
70 6CAY ERG 5.32544
71 4BNU 9KQ 5.57621
72 4DJA FAD 5.66667
73 4DJA DLZ 5.66667
74 4U63 FAD 5.66667
75 3L1N PLM 5.6701
76 3ZLR X0B 5.6962
77 3HSS MLA 5.80205
78 3ICT COA 6
79 3ICS COA 6
80 3DZT EAH 6
81 2IDO TMP 6.0241
82 2GJ5 VD3 6.17284
83 1OW4 2AN 6.20155
84 2XFH CL6 6.33333
85 5XJN 88L 6.33333
86 4B7S QLE 6.33333
87 6BYM HC3 6.40394
88 4H07 IPH 6.49351
89 5IXG OTP 6.50888
90 5W99 A1V 6.66667
91 3KB6 NAD 6.66667
92 6IIU A8X 7
93 3WHB DCC 7.2165
94 4Z87 5GP 7.33333
95 3W68 VIV 7.5188
96 2V5E SCR 7.92079
97 4JD3 COA 8
98 4JD3 PLM 8
99 2VBU CDP 8.08823
100 3TD3 GLY 8.13008
101 3AB1 FAD 9.33333
102 4W6Z 8ID 9.33333
103 1LLU NAD 9.33333
104 1J49 NAD 9.66667
105 1LN1 DLP 9.81308
106 2ZFZ ARG 10.1266
107 5L2Z 70C 10.3448
108 1EZV UQ6 10.4
109 3GE7 AFQ 10.6667
110 4I4Z 2NE 11.2727
111 5A8E XTK 11.6667
112 1OWB NAD 11.6667
113 2WPF FAD 12.6667
114 5OJY 9XB 12.9921
115 2PSM BAM 14.0496
116 4CDN FO1 14.3333
117 4CDN FAD 14.3333
118 1D6H COA 15.3333
119 3UMV FAD 15.3333
120 4E5N NAD 17
121 2FP2 TSA 18.0723
122 3N7S 3N7 20
123 4OGQ 2WA 38.2353
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