Receptor
PDB id Resolution Class Description Source Keywords
5AQZ 1.65 Å EC: 3.6.1.3 HSP72 WITH ADENOSINE-DERIVED INHIBITOR HOMO SAPIENS HEAT SHOCK PROTEIN HSP70 HSP72 ATPASE CHAPERONE ADENOSIINHIBITOR
Ref.: EXPLOITING PROTEIN CONFORMATIONAL CHANGE TO OPTIMIZ ADENOSINE-DERIVED INHIBITORS OF HSP70. J.MED.CHEM. V. 59 4625 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SGV A:1389;
Valid;
none;
Kd = 3.3 uM
309.278 C12 H15 N5 O5 c1c(c...
EDO A:1391;
A:1390;
A:1393;
A:1392;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5AR0 1.9 Å EC: 3.6.1.3 HSP72 WITH ADENOSINE-DERIVED INHIBITOR HOMO SAPIENS HEAT SHOCK PROTEIN HSP70 HSP72 ATPASE CHAPERONE ADENOSIINHIBITOR
Ref.: EXPLOITING PROTEIN CONFORMATIONAL CHANGE TO OPTIMIZ ADENOSINE-DERIVED INHIBITORS OF HSP70. J.MED.CHEM. V. 59 4625 2016
Members (16)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 6ZYI - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
2 1HJO - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
3 6G3S - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
4 6FHK - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
5 3AY9 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
6 5AQX - KC7 C21 H23 N3 O4 c1ccc(cc1)....
7 5MKR Ki = 17 uM TI8 C22 H25 Cl N6 O5 C=CC(=O)OC....
8 5AR0 Kd = 720 nM GB8 C20 H21 N7 O4 c1cc2cc(cc....
9 5AQW - 5P7 C14 H17 N3 O3 c1ccc2c(c1....
10 5MKS Ki = 17 uM TI8 C22 H25 Cl N6 O5 C=CC(=O)OC....
11 3ATU - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
12 1S3X - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
13 5AQZ Kd = 3.3 uM SGV C12 H15 N5 O5 c1c(c2c(nc....
14 2E8A - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
15 3ATV - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
16 5AQY - ADN C10 H13 N5 O4 c1nc(c2c(n....
70% Homology Family (74)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 261 families.
1 5EY4 Kd = 0.00075 M DTP C10 H16 N5 O12 P3 c1nc(c2c(n....
2 5EX5 - 7DD C11 H16 N4 O10 P2 c1cn(c2c1c....
3 5F1X Kd = 0.000000064 M ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
4 3LDP Kd = 2.41 uM 3P1 C20 H21 N7 O4 c1ccc2c(c1....
5 5F2R Kd = 0.000052 M ACP C11 H18 N5 O12 P3 c1nc(c2c(n....
6 5EXW Kd = 0.000000064 M 7DT C11 H17 N4 O13 P3 c1cn(c2c1c....
7 3LDO - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
8 5EVZ Kd = 0.000000064 M ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
9 3LDL - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
10 5F0X - DAT C10 H15 N5 O9 P2 c1nc(c2c(n....
11 3IUC - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
12 6ZYH - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
13 3GDQ - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
14 3JXU - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
15 6G3R - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
16 6P2U - NO7 C13 H17 N5 O10 P2 C#CCNc1c2c....
17 1KAZ - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
18 1QQN - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
19 1NGH - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
20 1ATR - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
21 1NGC - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
22 1NGF - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
23 1BA1 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
24 3HSC - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
25 1BA0 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
26 1QQO - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
27 2QWL - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
28 1NGG - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
29 6B1I - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
30 1ATS - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
31 1NGJ - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
32 1NGE - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
33 1KAY - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
34 1BUP - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
35 1QQM - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
36 6ZYJ - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
37 6B1N - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
38 1KAX - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
39 1NGD - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
40 2QWM - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
41 2BUP - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
42 1NGA - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
43 4H5T - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
44 1NGI - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
45 6B1M - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
46 1HPM - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
47 1NGB - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
48 5FPM - IWT C8 H6 N2 O S c1ccc(cc1)....
49 5FPE - 3TR C2 H4 N4 c1[nH]nc(n....
50 3I33 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
51 5FPD - PZA C5 H5 N3 O c1cnc(cn1)....
52 3FE1 - ADP MG n/a n/a
53 6ZYI - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
54 1HJO - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
55 6G3S - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
56 6FHK - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
57 3AY9 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
58 5AQX - KC7 C21 H23 N3 O4 c1ccc(cc1)....
59 5MKR Ki = 17 uM TI8 C22 H25 Cl N6 O5 C=CC(=O)OC....
60 5AR0 Kd = 720 nM GB8 C20 H21 N7 O4 c1cc2cc(cc....
61 5AQW - 5P7 C14 H17 N3 O3 c1ccc2c(c1....
62 5MKS Ki = 17 uM TI8 C22 H25 Cl N6 O5 C=CC(=O)OC....
63 3ATU - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
64 1S3X - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
65 5AQZ Kd = 3.3 uM SGV C12 H15 N5 O5 c1c(c2c(nc....
66 2E8A - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
67 3ATV - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
68 5AQY - ADN C10 H13 N5 O4 c1nc(c2c(n....
69 7A4V - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
70 6EOE - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
71 6EOF - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
72 3QFU - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
73 6RZQ - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
74 6S02 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
50% Homology Family (85)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 5EY4 Kd = 0.00075 M DTP C10 H16 N5 O12 P3 c1nc(c2c(n....
2 5EX5 - 7DD C11 H16 N4 O10 P2 c1cn(c2c1c....
3 5F1X Kd = 0.000000064 M ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
4 3LDP Kd = 2.41 uM 3P1 C20 H21 N7 O4 c1ccc2c(c1....
5 5F2R Kd = 0.000052 M ACP C11 H18 N5 O12 P3 c1nc(c2c(n....
6 5EXW Kd = 0.000000064 M 7DT C11 H17 N4 O13 P3 c1cn(c2c1c....
7 3LDO - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
8 5EVZ Kd = 0.000000064 M ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
9 3LDL - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
10 5F0X - DAT C10 H15 N5 O9 P2 c1nc(c2c(n....
11 3IUC - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
12 6ZYH - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
13 3GDQ - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
14 3JXU - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
15 6G3R - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
16 6P2U - NO7 C13 H17 N5 O10 P2 C#CCNc1c2c....
17 2V7Y - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
18 1KAZ - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
19 1QQN - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
20 1NGH - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
21 1ATR - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
22 1NGC - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
23 1NGF - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
24 1BA1 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
25 3HSC - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
26 1BA0 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
27 1QQO - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
28 2QWL - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
29 1NGG - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
30 6B1I - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
31 1ATS - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
32 1NGJ - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
33 1NGE - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
34 1KAY - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
35 1BUP - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
36 1QQM - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
37 6ZYJ - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
38 6B1N - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
39 1KAX - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
40 1NGD - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
41 2QWM - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
42 2BUP - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
43 1NGA - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
44 4H5T - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
45 1NGI - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
46 6B1M - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
47 1HPM - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
48 1NGB - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
49 5FPM - IWT C8 H6 N2 O S c1ccc(cc1)....
50 5FPE - 3TR C2 H4 N4 c1[nH]nc(n....
51 3I33 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
52 5FPD - PZA C5 H5 N3 O c1cnc(cn1)....
53 6GFA - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
54 6ASY - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
55 3FE1 - ADP MG n/a n/a
56 4GNI - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
57 6ZYI - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
58 1HJO - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
59 6G3S - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
60 6FHK - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
61 3AY9 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
62 5AQX - KC7 C21 H23 N3 O4 c1ccc(cc1)....
63 5MKR Ki = 17 uM TI8 C22 H25 Cl N6 O5 C=CC(=O)OC....
64 5AR0 Kd = 720 nM GB8 C20 H21 N7 O4 c1cc2cc(cc....
65 5AQW - 5P7 C14 H17 N3 O3 c1ccc2c(c1....
66 5MKS Ki = 17 uM TI8 C22 H25 Cl N6 O5 C=CC(=O)OC....
67 3ATU - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
68 1S3X - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
69 5AQZ Kd = 3.3 uM SGV C12 H15 N5 O5 c1c(c2c(nc....
70 2E8A - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
71 3ATV - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
72 5AQY - ADN C10 H13 N5 O4 c1nc(c2c(n....
73 4JN4 - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
74 4JNE - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
75 7A4V - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
76 6EOE - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
77 6EOF - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
78 5OBY - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
79 5OBW - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
80 5OBV - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
81 5OBU - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
82 5FPN - KYD C6 H8 N2 O2 Cc1c(c(n[n....
83 3QFU - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
84 6RZQ - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
85 6S02 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: SGV; Similar ligands found: 14
No: Ligand ECFP6 Tc MDL keys Tc
1 SGV 1 1
2 5ID 0.59375 0.923077
3 EKH 0.59375 0.923077
4 EKK 0.584615 0.923077
5 FTU 0.584615 0.923077
6 TO1 0.575758 0.952381
7 HO4 0.567164 0.952381
8 MZR 0.441176 0.859375
9 XYA 0.428571 0.967742
10 ADN 0.428571 0.967742
11 TBN 0.428571 0.983607
12 RAB 0.428571 0.967742
13 ZJB 0.425 0.857143
14 AD3 0.4 0.967742
Similar Ligands (3D)
Ligand no: 1; Ligand: SGV; Similar ligands found: 137
No: Ligand Similarity coefficient
1 7CI 0.9744
2 MG7 0.9479
3 RPP 0.9439
4 5I5 0.9371
5 LM7 0.9184
6 GMP 0.9121
7 UX0 0.9118
8 25V 0.9109
9 Q9G 0.9060
10 NOS 0.9055
11 RB1 0.9042
12 581 0.8985
13 RFZ 0.8980
14 XZ8 0.8974
15 GNG 0.8967
16 ABJ 0.8955
17 5FD 0.8940
18 9DI 0.8939
19 AB3 0.8921
20 5N5 0.8911
21 P9I 0.8906
22 A 0.8905
23 MTA 0.8899
24 IMG 0.8897
25 BZC 0.8889
26 CFE 0.8885
27 Z16 0.8885
28 FMC 0.8884
29 ER6 0.8882
30 5AD 0.8874
31 5CD 0.8873
32 5E4 0.8870
33 NWW 0.8869
34 1DA 0.8869
35 A4D 0.8868
36 26A 0.8868
37 DBM 0.8865
38 8OX 0.8852
39 3D1 0.8849
40 2FA 0.8846
41 5P7 0.8841
42 MDR 0.8840
43 1TD 0.8837
44 4P8 0.8833
45 D1M 0.8832
46 PUR 0.8822
47 145 0.8822
48 Z2T 0.8817
49 K10 0.8817
50 6GR 0.8817
51 B2L 0.8816
52 7GP 0.8813
53 GA2 0.8808
54 PRH 0.8807
55 Y3J 0.8803
56 CJZ 0.8802
57 GPU 0.8802
58 GPQ 0.8800
59 3BH 0.8800
60 HPR 0.8800
61 MTP 0.8798
62 4UO 0.8786
63 6MD 0.8785
64 7M5 0.8785
65 ARJ 0.8783
66 NOC 0.8783
67 IMH 0.8770
68 THM 0.8768
69 5NB 0.8764
70 UA2 0.8764
71 GPK 0.8761
72 VAR 0.8760
73 3DT 0.8757
74 Z15 0.8753
75 Z57 0.8752
76 EXX 0.8750
77 8HG 0.8746
78 XTS 0.8745
79 7A9 0.8744
80 L3L 0.8734
81 TLF 0.8728
82 IMV 0.8727
83 3AD 0.8725
84 ZYV 0.8725
85 6GP 0.8719
86 6J3 0.8714
87 PP1 0.8709
88 YM6 0.8708
89 NNR 0.8707
90 F01 0.8706
91 ID8 0.8703
92 13A 0.8699
93 PP2 0.8698
94 5DN 0.8690
95 8HH 0.8689
96 CL9 0.8677
97 9T6 0.8676
98 2LX 0.8672
99 5E1 0.8671
100 3WJ 0.8671
101 BGC OXZ 0.8664
102 5NN 0.8660
103 5F1 0.8654
104 5BT 0.8649
105 0DN 0.8644
106 UO1 0.8644
107 NTF 0.8642
108 78P 0.8642
109 5P3 0.8641
110 9MR 0.8640
111 DCF 0.8637
112 6BD 0.8637
113 KMP 0.8630
114 NYJ 0.8626
115 B2X 0.8623
116 IMQ 0.8618
117 AFX 0.8617
118 5UD 0.8616
119 T62 0.8612
120 IFM BGC 0.8611
121 FHI 0.8601
122 IMK 0.8598
123 AVX 0.8581
124 MCF 0.8579
125 NAR 0.8573
126 KOM 0.8569
127 A7M 0.8566
128 YK9 0.8551
129 3WO 0.8550
130 3WN 0.8550
131 57D 0.8547
132 BIE 0.8547
133 7D7 0.8544
134 3RQ 0.8538
135 YJX 0.8529
136 25O 0.8524
137 I0D 0.8512
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5AR0; Ligand: GB8; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5ar0.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
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