Receptor
PDB id Resolution Class Description Source Keywords
5AGS 1.47 Å EC: 6.1.1.4 CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF MYCOBACTERI TUBERCULOSIS IN COMPLEX WITH THE ADDUCT 3-(AMINOMETHYL)-4-BE THOXYBENZO[C][1,2]OXABOROL-1(3H)-OL-AMP MYCOBACTERIUM TUBERCULOSIS LIGASE M.TUBERCULOSIS LEUCINE-TRNA LIGASE ACTIVITY ATP + + TRNA(LEU) GIVES AMP + DIPHOSPHATE + L-LEUCYL- TRNA(LEU) ATRNA EDITING ACTIVITY AMINOACYL-TRNA SYNTHETASE PROTEIN BIOSYNTHESIS NOVEL BORON INHIBITORS OF LEURS
Ref.: DISCOVERY OF NOVEL ORAL PROTEIN SYNTHESIS INHIBITOR MYCOBACTERIUM TUBERCULOSIS THAT TARGET LEUCYL-TRNA SYNTHETASE. ANTIMICROB.AGENTS CHEMOTHER. V. 60 6271 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MET A:1515;
Invalid;
none;
submit data
149.211 C5 H11 N O2 S CSCC[...
38Y A:1514;
Valid;
none;
submit data
615.136 C20 H25 B Br N6 O9 P B1(O[...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5AGR 1.3 Å EC: 6.1.1.4 CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF MYCOBACTERI TUBERCULOSIS IN COMPLEX WITH THE ADDUCT (S)-3-(AMINOMETHYL)E THOXYBENZO[C][1,2]OXABOROL-1(3H)-OL-AMP MYCOBACTERIUM TUBERCULOSIS LIGASE ATP + L-LEUCINE + TRNA(LEU) GIVES AMP + DIPHOSPHATE LEUCYL- TRNA(LEU) AMINOACYL-TRNA EDITING ACTIVITY AMINOACYSYNTHETASE PROTEIN BIOSYNTHESIS NOVEL BORON INHIBITORS OF
Ref.: DISCOVERY OF NOVEL ORAL PROTEIN SYNTHESIS INHIBITOR MYCOBACTERIUM TUBERCULOSIS THAT TARGET LEUCYL-TRNA SYNTHETASE. ANTIMICROB.AGENTS CHEMOTHER. V. 60 6271 2016
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 10 families.
1 5AGT - A2H C20 H22 B Cl N6 O9 P [B-]12(c3c....
2 5AGS - 38Y C20 H25 B Br N6 O9 P B1(O[C@@H]....
3 5AGR - A52 C20 H23 B N6 O9 P [B-]12(c3c....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 10 families.
1 5AGT - A2H C20 H22 B Cl N6 O9 P [B-]12(c3c....
2 5AGS - 38Y C20 H25 B Br N6 O9 P B1(O[C@@H]....
3 5AGR - A52 C20 H23 B N6 O9 P [B-]12(c3c....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 2AJH - MET C5 H11 N O2 S CSCC[C@@H]....
2 7BZJ - FGX C28 H31 B N5 O9 P S [B-]12(CCc....
3 4K47 - WMP C24 H24 B N5 O9 P [B-]12(c3c....
4 5AGT - A2H C20 H22 B Cl N6 O9 P [B-]12(c3c....
5 5AGS - 38Y C20 H25 B Br N6 O9 P B1(O[C@@H]....
6 5AGR - A52 C20 H23 B N6 O9 P [B-]12(c3c....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: 38Y; Similar ligands found: 9
No: Ligand ECFP6 Tc MDL keys Tc
1 38Y 1 1
2 ANZ 0.44697 0.878049
3 7D5 0.440367 0.77381
4 A3P 0.422414 0.804878
5 A 0.415929 0.804878
6 AMP 0.415929 0.804878
7 ZZB 0.415493 0.939024
8 TM1 0.401515 0.709677
9 AV2 0.4 0.807229
Similar Ligands (3D)
Ligand no: 1; Ligand: 38Y; Similar ligands found: 2
No: Ligand Similarity coefficient
1 A2H 0.9939
2 A52 0.9861
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5AGR; Ligand: A52; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5agr.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
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