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Receptor
PDB id Resolution Class Description Source Keywords
4YLG 1.8 Å NON-ENZYME: OTHER STRUCTURE OF AN ADP RIBOSYLATION FACTOR FROM ENTAMOEBA HISTO 1:IMSS BOUND TO MG-GDP ENTAMOEBA HISTOLYTICA HM-1:IMSS SIGNALING PROTEIN STRUCTURAL GENOMICS SEATTLE STRUCTURAL GCENTER FOR INFECTIOUS DISEASE SSGCID
Ref.: STRUCTURE OF AN ADP-RIBOSYLATION FACTOR, ARF1, FROM ENTAMOEBA HISTOLYTICA BOUND TO MG(2+)-GDP. ACTA CRYSTALLOGR.,SECT.F V. 71 594 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:201;
B:201;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:202;
B:202;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4YLG 1.8 Å NON-ENZYME: OTHER STRUCTURE OF AN ADP RIBOSYLATION FACTOR FROM ENTAMOEBA HISTO 1:IMSS BOUND TO MG-GDP ENTAMOEBA HISTOLYTICA HM-1:IMSS SIGNALING PROTEIN STRUCTURAL GENOMICS SEATTLE STRUCTURAL GCENTER FOR INFECTIOUS DISEASE SSGCID
Ref.: STRUCTURE OF AN ADP-RIBOSYLATION FACTOR, ARF1, FROM ENTAMOEBA HISTOLYTICA BOUND TO MG(2+)-GDP. ACTA CRYSTALLOGR.,SECT.F V. 71 594 2015
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
5 1YZG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
10 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (19)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 204 families.
1 4V0K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4V0L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
3 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
7 1FZQ Kd = 24 nM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1Z6Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1ZJ6 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
10 1YZG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
12 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
13 1ZD9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 2AL7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
15 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
16 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
17 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
18 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
19 4BAS - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4YLG; Ligand: GDP; Similar sites found with APoc: 562
This union binding pocket(no: 1) in the query (biounit: 4ylg.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 3Q72 GNP None
2 1KAO GDP None
3 1LVG ADP None
4 2GJ8 ALF GDP None
5 2RGX AP5 None
6 1UKZ ADP None
7 1JJV ATP None
8 1D2N ANP None
9 1W4R TTP None
10 3KC1 2T6 None
11 2B8T THM None
12 2JJK R15 None
13 4UXH T5A None
14 2ORV 4TA None
15 5LLB 6YZ None
16 2GNK ATP None
17 3A4M ADP 1.15385
18 2QG6 NMN 1.15607
19 1KO8 6PG 1.15607
20 1OXV ANP 1.7341
21 1P72 ADP 1.7341
22 4TTQ ATP 1.7341
23 3BOS CDP 1.7341
24 1IN4 ADP 1.7341
25 1CR1 TTP 1.7341
26 2ZPA ADP 1.7341
27 4WOP CTP 1.7341
28 3BD9 A3P 1.7341
29 5NM7 GLY 1.8797
30 1G3Q ADP 2.31214
31 3QXC ATP 2.31214
32 2B6N ALA PRO THR 2.31214
33 1H65 GDP 2.59259
34 3MD0 GDP 2.89017
35 4U5X GNP 2.89017
36 3IIJ ADP 2.89017
37 2ZFI ADP 2.89017
38 4PX9 ADP 2.89017
39 4BFW ZVW 2.89017
40 5H4S RAM 2.89017
41 2O0J ADP 2.89017
42 1UJ2 C5P 2.89017
43 4QOS ADP 2.89017
44 1UJ2 ADP 2.89017
45 1X8J A3P 2.89017
46 2I4I AMP 2.89017
47 2WPB ZZI 2.89017
48 3ITJ CIT 2.89017
49 1BO4 COA 2.97619
50 1VHT BA3 3.21101
51 4B47 GDP 3.46821
52 3BFV ADP 3.46821
53 1XMV ADP 3.46821
54 2HF9 GSP 3.46821
55 2DPY ADP 3.46821
56 5GVR LMR 3.46821
57 1XP8 AGS 3.46821
58 5Y6N ADP 3.46821
59 2FAH GDP 3.46821
60 4FCW ADP 3.46821
61 3DZD ADP 3.46821
62 4LJ9 ACP 3.46821
63 1YTM ATP 3.46821
64 1DAK ADP 3.46821
65 1DAK DPU 3.46821
66 1T8U UAP SGN IDS SGN 3.46821
67 4A4Z ANP 3.46821
68 1T8U A3P 3.46821
69 2VHJ ADP 3.46821
70 4LC1 GDP 4.04624
71 1B0U ATP 4.04624
72 3UIE ANP 4.04624
73 1Z6T ADP 4.04624
74 2CHG ANP 4.04624
75 5ME4 HP4 4.04624
76 5WRJ A3P 4.04624
77 1W5T ANP 4.04624
78 4LHD GLY 4.04624
79 1W5T ADP 4.04624
80 4ZDJ UTP 4.04624
81 3BER AMP 4.04624
82 4TL6 ANP 4.04624
83 2VWT PYR 4.04624
84 2D2F ADP 4.04624
85 5WRI A3P 4.04624
86 5YT0 GDP 4.62428
87 5FG3 GDP 4.62428
88 1G6H ADP 4.62428
89 3PQC GDP 4.62428
90 3E70 GDP 4.62428
91 1IWE IMP 4.62428
92 3KJI ADP 4.62428
93 3ZFD ANP 4.62428
94 1LVK MNT BEF 4.62428
95 1SVM ATP 4.62428
96 2XAU ADP 4.62428
97 3IUY AMP 4.62428
98 3BFX A3P 4.62428
99 1Q20 PLO 4.62428
100 1Q20 A3P 4.62428
101 2Z5F A3P 4.62428
102 2PEZ DAT 4.62428
103 2PEZ GGZ 4.62428
104 3CV2 OXL 4.62428
105 1NST A3P 4.62428
106 1JG3 ADN 4.62428
107 1F2U ATP 4.72973
108 1GUA GNP 4.93827
109 2AWN ADP 5.20231
110 4LPS GDP 5.20231
111 2VVG ADP 5.20231
112 1D2E GDP 5.20231
113 3TK1 GDP 5.20231
114 2QEN ADP 5.20231
115 5XKT GNP 5.20231
116 1FP6 ADP 5.20231
117 1E2K TMC 5.20231
118 1VKJ A3P 5.20231
119 4GBM A3P 5.20231
120 3QVV 3QV 5.20231
121 3QVV A3P 5.20231
122 2ZPT A3P 5.20231
123 5BYK A3P 5.20231
124 5BYK OAQ 5.20231
125 2GWH A3P 5.20231
126 5MEX SZZ 5.20231
127 3QKT ANP 5.20231
128 4D42 NAP 5.20231
129 4D42 W0I 5.20231
130 3FSY SCA 5.20231
131 6AIC AMP 5.20231
132 5MEX PAP 5.20231
133 1G7C 5GP 5.31915
134 4IDN GNP 5.47046
135 1SKQ GDP 5.78035
136 1GOJ ADP 5.78035
137 1TQ4 GDP 5.78035
138 2ZR9 DTP 5.78035
139 1QF5 GDP 5.78035
140 1QF5 RPL 5.78035
141 1X6V ADP 5.78035
142 5N69 ADP 5.78035
143 3VX3 ADP 5.78035
144 4D81 ADP 5.78035
145 6C90 ADP 5.78035
146 3KTA AP5 5.78035
147 4PFO ADP 5.78035
148 2QQ0 ANP 5.78035
149 2QQ0 THM 5.78035
150 2QQ0 ADP 5.78035
151 2QQ0 TMP 5.78035
152 4IOK ADP 5.78035
153 4IOK XPO 5.78035
154 2VB6 ADP BEF 5.78035
155 2WOJ ADP ALF 5.78035
156 3ZS9 ADP ALF 5.78035
157 2IXE ATP 5.78035
158 5ZB0 TYD 5.78035
159 5ZB0 ADP 5.78035
160 3DUV KDO 5.78035
161 1XEX ATP 5.78035
162 2OFW ADX 5.78035
163 1V8K ANP 6.09756
164 2HCJ GDP 6.35838
165 1YRB GDP 6.35838
166 1D8T GDP 6.35838
167 2BVN GNP 6.35838
168 2W58 ADP 6.35838
169 2Y65 ADP 6.35838
170 4NCN GTP 6.35838
171 4AG5 ADP 6.35838
172 1JI0 ATP 6.35838
173 3B5J 12D 6.35838
174 5ZXD ATP 6.35838
175 4IHQ ADP 6.35838
176 1S3G AP5 6.35838
177 1P9B GDP 6.35838
178 4MKF AP5 6.35838
179 4MKG AP5 6.35838
180 1G6O ADP 6.35838
181 1AKY AP5 6.35838
182 2IS6 ADP 6.35838
183 5UIV ADP 6.35838
184 3DKP ADP 6.35838
185 1G41 ADP 6.35838
186 4HSE ADP 6.35838
187 2BEK ATP 6.35838
188 2GK6 ADP 6.35838
189 4TMK T5A 6.35838
190 1NY5 ADP 6.35838
191 4OI4 ATP 6.35838
192 2JAQ DCP 6.35838
193 5LX9 OLB 6.35838
194 1J99 AND 6.35838
195 4KBF AMP 6.84932
196 1MKY GDP 6.93642
197 3A1S GDP 6.93642
198 3NHB ADP 6.93642
199 4CVN ADP 6.93642
200 2WHX ADP 6.93642
201 1XKV ATP 6.93642
202 2YOH WMJ 6.93642
203 4GOX A3P 6.93642
204 2JLR ANP 6.93642
205 1NJF ADP 6.93642
206 2GDJ ANP 6.93642
207 1NJF AGS 6.93642
208 1Z83 AP5 6.93642
209 2B8W ALF 5GP 6.93642
210 3FYH ADP 6.93642
211 1F5N GNP 6.93642
212 1I0B PEL 6.93642
213 1ZUI SKM 7.14286
214 4R2I ANP 7.14286
215 5HCN GCP 7.51445
216 1YQT ADP 7.51445
217 1SQ5 ADP 7.51445
218 4ZNL BEF ADP 7.51445
219 2XTN GTP 7.51445
220 1ZIN AP5 7.51445
221 4NU0 AP5 7.51445
222 5I34 GDP 7.51445
223 1OS1 ATP 7.51445
224 1OS1 PYR 7.51445
225 5MZN ADP 7.51445
226 4ZG4 VO4 ADP 7.51445
227 1G3M PCQ 7.51445
228 1G3M A3P 7.51445
229 4PJ3 ANP 7.51445
230 2V5K OXM 7.51445
231 4KFU ACP 7.54717
232 1DAR GDP 8.09249
233 4P4T GDP 8.09249
234 3DC4 ADP 8.09249
235 6DEF GCP 8.09249
236 4BQS K2Q 8.09249
237 4BQS ADP 8.09249
238 4NE2 SH2 8.09249
239 4NE2 ADP 8.09249
240 3P4X ADP 8.09249
241 4XVU ATP 8.09249
242 3TBK ANP 8.09249
243 1OFH ADP 8.09249
244 5E5U MLI 8.09249
245 5TIV A3P 8.09249
246 3MGB PAP 8.09249
247 2WIC GNP 8.67052
248 4R98 GNH 8.67052
249 4HDO GNP 8.67052
250 1SVI GDP 8.67052
251 4WZ6 ATP 8.67052
252 4H1V GNP 8.67052
253 1WF3 GNP 8.67052
254 5L3W GDP 8.67052
255 1OYY AGS 8.67052
256 5Z69 AGS 8.67052
257 3B7G ANP 8.67052
258 2FSH ANP 8.67052
259 1LOJ U 9.1954
260 1BG2 ADP 9.24856
261 1T5C ADP 9.24856
262 3B9Q MLI 9.24856
263 2OG2 MLI 9.24856
264 5L3R GCP 9.24856
265 1XX6 ADP 9.24856
266 2C9O ADP 9.24856
267 2C78 GNP 9.82659
268 2C77 GNP 9.82659
269 2GKS ADP 9.82659
270 5BQ5 ADP BEF 9.82659
271 1B7T ADP 9.82659
272 3RC3 ANP 9.82659
273 4QM7 GTP 9.94152
274 4U00 ADP 10.4046
275 1RRC ADP 10.4046
276 2XT3 ADP 10.4046
277 1ION ADP 10.4046
278 3FB4 AP5 10.4046
279 4X8O AP5 10.4046
280 2Q2Y ADP 10.4046
281 2Q2Y MKR 10.4046
282 1AQU A3P 10.4046
283 4YS0 ADP 10.4046
284 1KK8 BEF ADP 10.7914
285 4XTR ADP 10.8108
286 4XTR ATP 10.8108
287 2QN6 GDP 10.9827
288 4RD0 GDP 10.9827
289 3COB ADP 10.9827
290 5L3V GDP 10.9827
291 2CDN ADP 10.9827
292 1W0J ADP 10.9827
293 5L3S GNP 10.9827
294 5AK0 8V1 10.9827
295 1IHU AF3 10.9827
296 1IHU ADP 10.9827
297 1W0J ADP BEF 10.9827
298 5L3S G 10.9827
299 1U0J ADP 10.9827
300 1YXM ADE 10.9827
301 1GXU 2HP 10.989
302 5U32 GDP 11.5607
303 5TSH ADP 11.5607
304 5TSH ANP 11.5607
305 3QF7 ANP 11.5607
306 5EXT ADP 11.5607
307 5YV5 ADP 11.5607
308 3TMK T5A 11.5607
309 6G14 G4P 12.1387
310 3EC1 GDP 12.1387
311 1PUJ GNP 12.1387
312 1M7G AV2 12.1387
313 3H4S ADP 12.1387
314 5KSP GDP 12.1387
315 1F9V ADP 12.1387
316 4FRZ ADP 12.1387
317 1M7G ADP 12.1387
318 1M7G ADX 12.1387
319 1QF9 ALF 12.3711
320 1QF9 C5P 12.3711
321 1QF9 ADP 12.3711
322 1DCP HBI 12.5
323 5CK5 GDP 12.7168
324 5KSZ GCP 12.7168
325 2NCD ADP 12.7168
326 1NHX FTB 12.7168
327 1NHX PEP 12.7168
328 2GMV UN8 12.7168
329 2GMV PEP 12.7168
330 5HV7 RBL 12.7168
331 2F3R G5P 12.7168
332 5KUT GDP 13.2948
333 1G7S GDP 13.2948
334 4YMU ATP 13.2948
335 4R43 GDP 13.2948
336 5BN3 ADP 13.2948
337 1FNN ADP 13.2948
338 3H86 AP5 13.2948
339 3R7F CP 13.2948
340 4Q1A UDP 13.8728
341 4Q1A 2XZ 13.8728
342 2PL3 ADP 13.8728
343 1NN5 2DT 13.8728
344 1NN5 ANP 13.8728
345 1OE0 TTP 13.8728
346 4HI0 GDP 14.4509
347 2IYL GDP 14.4509
348 1RJ9 GCP 14.4509
349 3FWY ADP 14.4509
350 5ZBR ANP 14.4509
351 3HU3 AGS 14.4509
352 5I0H ADP BEF 14.4509
353 5M04 GDP 15.0289
354 4WZA ACP 15.0289
355 4WZA ADP 15.0289
356 2QZ4 ADP 15.0289
357 3ZIA ATP 15.6069
358 4IEE AGS 15.6069
359 3ZIA ADP 15.6069
360 3FVQ ATP 15.6069
361 4C5N PXL 15.6069
362 2CK3 ANP 16
363 2V7Q ATP 16
364 2V7Q ADP 16
365 2CK3 ADP 16
366 1KK1 GNP 16.185
367 2BIF ANP 16.185
368 2BIF SIN 16.185
369 2ZE7 AMP 16.185
370 2ZE7 DST 16.185
371 1JJ7 ADP 16.763
372 3RLF ANP 16.763
373 5X40 ACP 17.341
374 1L2T ATP 17.341
375 3DEF GDP 17.9191
376 2D7D ADP 17.9191
377 6B4K ANP 17.9191
378 1R6B ADP 18.4971
379 5HR5 ADP 18.4971
380 6B8B ADP 18.8755
381 1E96 GTP 19.0751
382 3WXM GTP 19.0751
383 2J5V PCA 19.0751
384 1I4D GDP 19.6532
385 1DS6 GDP 19.6532
386 1RYH GNP 19.6532
387 2FJU GSP 19.6532
388 2WKQ GTP 19.6532
389 1HE1 GDP 19.6532
390 3SBD GNP 19.6532
391 3W5J GDP 20.2312
392 2J0V GDP 20.2312
393 2W2X GSP 20.2312
394 2XTZ GSP 20.8092
395 3Q85 GNP 21.3018
396 3M1I GTP 21.9653
397 2ZEJ GDP 21.9653
398 3GJ0 GDP 22.5434
399 3GJ3 GDP 22.5434
400 3GJ7 GDP 22.5434
401 3GJ4 GDP 22.5434
402 5BXQ GDP 22.5434
403 3CH5 GDP 22.5434
404 3GJ5 GDP 22.5434
405 6AU6 GDP 22.5434
406 5UWQ GNP 22.5434
407 5UWS GNP 22.5434
408 5UWU GNP 22.5434
409 5UWO GNP 22.5434
410 4HAT GNP 22.5434
411 3GJ8 GDP 22.5434
412 1WA5 GTP 22.5434
413 1G4U GDP 22.5434
414 5UWW GNP 22.5434
415 5DIF GNP 22.5434
416 1CS4 GSP 22.5434
417 5UWJ GNP 22.5434
418 5UWT GNP 22.5434
419 5UWR GNP 22.5434
420 5UWI GNP 22.5434
421 5DHF GNP 22.5434
422 5UWH GNP 22.5434
423 1IBR GNP 22.5434
424 5UWP GNP 22.5434
425 5DI9 GNP 22.5434
426 1MH1 GNP 22.5434
427 1M7B GTP 23.1214
428 1GWN GTP 23.1214
429 2ZJ5 ADP 23.1214
430 1W7J ADP BEF 23.8411
431 4NON GDP 24.2775
432 2CJW GDP 24.8555
433 2HT6 GDP 24.8555
434 5LB3 ADP 24.8555
435 6CS8 F9Y 25.4335
436 1TAD ALF 26.0116
437 1TAD GDP 26.0116
438 1Z2A GDP 26.1905
439 1GOT GDP 26.5896
440 1A4R GNH 26.5896
441 5UPK GNP 26.5896
442 1A4R GDP 26.5896
443 2NGR GDP 26.5896
444 1GRN GDP 26.5896
445 4ITR GDP 26.5896
446 2NGR AF3 26.5896
447 4DCT GDP 27.1676
448 1K6M AGS 27.1676
449 2RCN GDP 27.7457
450 6CRK GDP 27.7457
451 1GP2 GDP 27.7457
452 5KDO GDP 27.7457
453 2OM2 GDP 27.7457
454 1Y3A GDP 27.7457
455 2ODE ALF GDP 27.7457
456 1BH2 GSP 27.7457
457 1NF3 GNP 27.7457
458 1Z0A GDP 28.3237
459 2A5J GDP 28.3237
460 1FQJ GDP 28.3237
461 1FQK GDP 28.3237
462 1SVK ALF GDP 28.3237
463 1Z0F GDP 28.9017
464 4DID GDP 28.9017
465 3REF GDP 28.9017
466 2CE7 ADP 28.9017
467 3T1O GDP 29.4798
468 3T12 GDP ALF 29.4798
469 2BME GNP 29.4798
470 5UQW GDP 29.6296
471 5TB5 GDP 30.2703
472 5TAR GDP 30.2703
473 3T5G GDP 31.2139
474 3AB3 GDP 31.2139
475 6BSX GDP 31.2139
476 5Z2M GTP 31.2139
477 3CX8 GSP 31.2139
478 6BSX E7S 31.2139
479 1VG1 GDP 31.7919
480 1VG9 GDP 31.7919
481 1VG0 GDP 31.7919
482 1VG8 GNP 31.7919
483 1X1R GDP 32.0225
484 4D0N GDP 32.3699
485 2C5L GTP 32.3699
486 2KIN ADP 32.3699
487 6FA4 GNP 32.3699
488 1CXZ GSP 32.3699
489 4K81 GTP 32.7485
490 2GCO GNP 32.948
491 2GCN GDP 32.948
492 3ZQ6 ADP ALF 32.948
493 5O2T GSP 33.1361
494 5OCG GNP 33.526
495 1LFD GNP 33.5329
496 5WLB GNP 33.7349
497 3KUD GDP 33.7349
498 1WQ1 GDP 33.7349
499 2UZI GTP 33.7349
500 1NVV GNP 33.7349
501 3DDC GNP 33.7349
502 1CLU DBG 33.7349
503 1WQ1 AF3 33.7349
504 2FFQ GSP 33.9181
505 2BCG GDP 34.104
506 5HPY GDP 34.104
507 1OW3 GDP 34.104
508 5IRC GDP 34.104
509 1YZN GNP 34.104
510 1TX4 ALF GDP 34.104
511 6D5J GNP 34.1317
512 6D5E GNP 34.1317
513 6BVJ GNP 34.1317
514 6BVK GNP 34.1317
515 6D5H GNP 34.1317
516 6D5G GNP 34.1317
517 6D59 GNP 34.1317
518 6BVL GNP 34.1317
519 6D55 GNP 34.1317
520 6D5L GNP 34.1317
521 6BVI GNP 34.1317
522 6D56 GNP 34.1317
523 6BVM GNP 34.1317
524 6D5M GNP 34.1317
525 6D5V GNP 34.1317
526 5O74 GDP 34.6821
527 2WJG GDP 34.6821
528 1TU3 GNP 35.0877
529 3MJH GTP 35.119
530 1NRJ GTP 35.2601
531 1G16 GDP 35.2941
532 1Z08 GNP 35.2941
533 1R2Q GNP 35.2941
534 1YZQ GNP 35.2941
535 3QBT GNP 35.8382
536 1Z0K GTP 36.0465
537 2WJH GDP 36.1446
538 2WJH FLC 36.1446
539 1KMQ GNP 36.4162
540 5XC5 GTP 36.4162
541 1KY3 GDP 36.9942
542 2F9L GDP 38.1503
543 1Z0J GTP 38.2353
544 3RAB GNP 38.4615
545 2G77 GDP 38.7283
546 2FH5 GTP 38.7283
547 1YVD GNP 39.0533
548 3RWO GDP 39.3064
549 1ZC3 GNP 39.8844
550 1S8F GDP 40.4624
551 2A9K GDP 40.4624
552 1OIX GDP 41.0405
553 1OIV GDP 41.6185
554 1U8Z GDP 41.6667
555 2HV8 GTP 41.8605
556 1D5C GDP 41.9753
557 1Z06 GNP 42.1965
558 4C4P GNP 42.1965
559 1EK0 GNP 42.3529
560 2D7C GTP 42.515
561 3BC1 GNP 42.7746
562 1F6B GDP 46.2428
Pocket No.: 2; Query (leader) PDB : 4YLG; Ligand: GDP; Similar sites found with APoc: 17
This union binding pocket(no: 2) in the query (biounit: 4ylg.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 5EP2 AZU 1.7341
2 3PA8 621 2.31214
3 1CM0 COA 2.97619
4 3B9Z CO2 3.46821
5 1Z82 G3P 3.8806
6 1Z82 G3H 3.8806
7 1JT1 MCO 4.62428
8 5OCQ CIT 5.78035
9 4M3P HCS 6.35838
10 3LN9 FLC 6.47482
11 2ZFZ ARG 7.59494
12 4AG9 COA 9.69697
13 1M5B BN1 9.82659
14 1ZEI CRS 11.3208
15 1DKU AP2 19.6532
16 1HE1 AF3 19.6532
17 1FQJ ALF 28.3237
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