Receptor
PDB id Resolution Class Description Source Keywords
4XDA 1.75 Å EC: 2.7.1.15 VIBRIO CHOLERAE O395 RIBOKINASE COMPLEXED WITH RIBOSE, ADP A ION. VIBRIO CHOLERAE SEROTYPE O1 (STRAIN AT/ CLASSICAL OGAWA 395 / O395) RIBOKINASE RIBOSE KINASE
Ref.: CRYSTAL STRUCTURE OF APO AND LIGAND BOUND VIBRIO CH RIBOKINASE (VC-RK): ROLE OF MONOVALENT CATION INDUC ACTIVATION AND STRUCTURAL FLEXIBILITY IN SUGAR PHOSPHORYLATION ADV.EXP.MED.BIOL. V. 842 293 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ADP B:401;
D:402;
C:402;
B:402;
A:402;
 Valid;
Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
none;
 submit data
427.201 C10 H15 N5 O10 P2 c1nc(...
NA C:403;
A:403;
B:403;
D:403;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
22.99 Na [Na+]
RIB A:401;
C:401;
D:401;
 Valid;
Valid;
Valid;
 none;
none;
none;
 submit data
150.13 C5 H10 O5 C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4XDA 1.75 Å EC: 2.7.1.15 VIBRIO CHOLERAE O395 RIBOKINASE COMPLEXED WITH RIBOSE, ADP A ION. VIBRIO CHOLERAE SEROTYPE O1 (STRAIN AT/ CLASSICAL OGAWA 395 / O395) RIBOKINASE RIBOSE KINASE
Ref.: CRYSTAL STRUCTURE OF APO AND LIGAND BOUND VIBRIO CH RIBOKINASE (VC-RK): ROLE OF MONOVALENT CATION INDUC ACTIVATION AND STRUCTURAL FLEXIBILITY IN SUGAR PHOSPHORYLATION ADV.EXP.MED.BIOL. V. 842 293 2015
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4XDA - RIB C5 H10 O5 C([C@@H]1[....
2 4XCK - RIB C5 H10 O5 C([C@@H]1[....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4XDA - RIB C5 H10 O5 C([C@@H]1[....
2 4XCK - RIB C5 H10 O5 C([C@@H]1[....
3 1RKD - RIB C5 H10 O5 C([C@@H]1[....
4 1GQT - RIB C5 H10 O5 C([C@@H]1[....
5 1RKS - RIB C5 H10 O5 C([C@@H]1[....
6 1RK2 - ALF Al F4 F[Al-](F)(....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4XDA - RIB C5 H10 O5 C([C@@H]1[....
2 4XCK - RIB C5 H10 O5 C([C@@H]1[....
3 1RKD - RIB C5 H10 O5 C([C@@H]1[....
4 1GQT - RIB C5 H10 O5 C([C@@H]1[....
5 1RKS - RIB C5 H10 O5 C([C@@H]1[....
6 1RK2 - ALF Al F4 F[Al-](F)(....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ADP; Similar ligands found: 435
No: Ligand ECFP6 Tc MDL keys Tc
1 ADP 1 1
2 ATP 0.9 1
3 A2D 0.895522 0.971831
4 AQP 0.887324 1
5 5FA 0.887324 1
6 AP5 0.884058 0.971831
7 B4P 0.884058 0.971831
8 BA3 0.869565 0.971831
9 AN2 0.84507 0.985915
10 M33 0.833333 0.958333
11 ACQ 0.826667 0.972222
12 A 0.823529 0.971429
13 AMP 0.823529 0.971429
14 ACP 0.821918 0.972222
15 AR6 0.810811 0.971831
16 APR 0.810811 0.971831
17 ANP 0.802632 0.972222
18 AD9 0.8 0.972222
19 AGS 0.8 0.945946
20 SAP 0.8 0.945946
21 ADX 0.783784 0.873418
22 CA0 0.783784 0.945205
23 TAT 0.779221 0.958904
24 AMP MG 0.774648 0.891892
25 50T 0.773333 0.958333
26 ABM 0.763889 0.917808
27 APC 0.763158 0.958904
28 PRX 0.763158 0.893333
29 ATF 0.759494 0.958904
30 A22 0.753086 0.985915
31 A12 0.743243 0.958904
32 AP2 0.743243 0.958904
33 ADP MG 0.736842 0.905405
34 SRA 0.736111 0.918919
35 ADQ 0.73494 0.945205
36 25L 0.732558 0.985915
37 ADP BEF 0.727273 0.881579
38 BEF ADP 0.727273 0.881579
39 5AL 0.725 0.931507
40 2A5 0.717949 0.918919
41 A1R 0.714286 0.907895
42 AU1 0.714286 0.972222
43 ADP PO3 0.708861 0.943662
44 PAP 0.708861 0.985714
45 ATR 0.708861 0.971429
46 SRP 0.707317 0.906667
47 7D3 0.706667 0.905405
48 25A 0.702381 0.971831
49 ATP MG 0.7 0.905405
50 OAD 0.697674 0.945205
51 RBY 0.6875 0.932432
52 ADV 0.6875 0.932432
53 00A 0.686047 0.883117
54 5SV 0.682353 0.848101
55 8QN 0.682353 0.931507
56 OOB 0.682353 0.931507
57 3OD 0.681818 0.945205
58 BIS 0.681818 0.933333
59 ADP ALF 0.674699 0.87013
60 ALF ADP 0.674699 0.87013
61 AMO 0.674419 0.932432
62 4AD 0.674419 0.92
63 PAJ 0.674419 0.884615
64 GAP 0.670732 0.893333
65 MAP 0.670588 0.945946
66 DLL 0.666667 0.931507
67 ANP MG 0.666667 0.894737
68 VO4 ADP 0.666667 0.931507
69 AHX 0.666667 0.896104
70 ADP VO4 0.666667 0.931507
71 PTJ 0.662921 0.896104
72 3UK 0.659091 0.918919
73 SON 0.658228 0.932432
74 LAD 0.651685 0.860759
75 WAQ 0.651685 0.883117
76 PR8 0.651685 0.85
77 ITT 0.65 0.943662
78 7D4 0.65 0.905405
79 G5P 0.648936 0.921053
80 RAB 0.647059 0.84507
81 ADN 0.647059 0.84507
82 XYA 0.647059 0.84507
83 TXA 0.644444 0.932432
84 1ZZ 0.644444 0.839506
85 ME8 0.644444 0.839506
86 NB8 0.644444 0.896104
87 FYA 0.644444 0.905405
88 6AD 0.642857 0.909091
89 ADP BMA 0.640449 0.918919
90 G3A 0.638298 0.921053
91 DAL AMP 0.632184 0.905405
92 AFH 0.631579 0.884615
93 9SN 0.630435 0.871795
94 GTA 0.625 0.886076
95 YAP 0.623656 0.894737
96 FA5 0.623656 0.906667
97 UP5 0.622449 0.92
98 XAH 0.617021 0.839506
99 AV2 0.616279 0.917808
100 AOC 0.615385 0.821918
101 48N 0.612245 0.896104
102 4UV 0.610526 0.894737
103 TXD 0.606061 0.907895
104 DND 0.606061 0.932432
105 NAX 0.606061 0.873418
106 NXX 0.606061 0.932432
107 NAI 0.606061 0.907895
108 6V0 0.606061 0.896104
109 5N5 0.605634 0.819444
110 5AS 0.604938 0.77907
111 A4P 0.60396 0.843373
112 DAT 0.60241 0.905405
113 A2R 0.602273 0.985915
114 TXE 0.6 0.907895
115 OMR 0.6 0.851852
116 4UU 0.597938 0.894737
117 A A 0.597826 0.944444
118 A4D 0.597222 0.819444
119 5CD 0.597222 0.805556
120 AP0 0.594059 0.896104
121 4TC 0.594059 0.896104
122 A3P 0.592593 0.971429
123 139 0.592233 0.873418
124 T5A 0.592233 0.841463
125 7D5 0.592105 0.878378
126 ATP A A A 0.589474 0.930556
127 LAQ 0.585859 0.839506
128 MYR AMP 0.585106 0.817073
129 YLP 0.58 0.819277
130 UPA 0.578431 0.907895
131 7DD 0.578313 0.985714
132 ADJ 0.576923 0.851852
133 3AM 0.576923 0.929577
134 COD 0.575472 0.811765
135 NAD 0.575472 0.931507
136 3AT 0.574713 0.971831
137 JB6 0.574468 0.883117
138 4UW 0.574257 0.860759
139 EP4 0.573333 0.753247
140 A2P 0.573171 0.957143
141 CNA 0.571429 0.932432
142 TYM 0.568627 0.906667
143 PPS 0.568182 0.873418
144 TYR AMP 0.56701 0.881579
145 DTA 0.565789 0.786667
146 M2T 0.565789 0.734177
147 AR6 AR6 0.565657 0.917808
148 A3D 0.564815 0.918919
149 3DH 0.564103 0.773333
150 G5A 0.563218 0.77907
151 YLB 0.563107 0.819277
152 YLC 0.563107 0.839506
153 AMP DBH 0.561224 0.893333
154 MTA 0.558442 0.773333
155 DTP 0.556818 0.905405
156 AHZ 0.554455 0.817073
157 NA7 0.553191 0.958904
158 IOT 0.552381 0.831325
159 7MD 0.55 0.8625
160 ZAS 0.55 0.766234
161 IMO 0.548781 0.929577
162 YLA 0.54717 0.819277
163 NAE 0.544643 0.894737
164 TAD 0.544554 0.884615
165 A5A 0.544444 0.807229
166 2AM 0.544304 0.943662
167 TSB 0.543478 0.819277
168 6RE 0.54321 0.759494
169 AYB 0.542056 0.809524
170 NAQ 0.539823 0.871795
171 V3L 0.539326 0.971831
172 ARG AMP 0.539216 0.829268
173 AF3 ADP 3PG 0.538462 0.8375
174 SSA 0.538462 0.8
175 LA8 ALF 3PG 0.538462 0.8375
176 ALF ADP 3PG 0.538462 0.8375
177 ZID 0.535088 0.918919
178 LPA AMP 0.533981 0.817073
179 54H 0.532609 0.788235
180 52H 0.532609 0.77907
181 VMS 0.532609 0.788235
182 BTX 0.53211 0.841463
183 J7C 0.53012 0.769231
184 A3N 0.53012 0.786667
185 5X8 0.528736 0.763158
186 BT5 0.527273 0.831325
187 5CA 0.526882 0.8
188 53H 0.526882 0.77907
189 ARU 0.526316 0.860759
190 EAD 0.525862 0.873418
191 RGT 0.525253 0.958904
192 OVE 0.52439 0.905405
193 S4M 0.52381 0.666667
194 7DT 0.522727 0.985714
195 GDP 0.522222 0.92
196 DDS 0.522222 0.878378
197 AVV 0.521277 0.896104
198 NDE 0.521008 0.932432
199 7MC 0.518868 0.841463
200 DSH 0.518072 0.725
201 MAO 0.517647 0.759036
202 LSS 0.515789 0.761364
203 DSZ 0.515789 0.8
204 NSS 0.515789 0.8
205 P5A 0.515464 0.744444
206 DZD 0.513514 0.884615
207 NVA LMS 0.510417 0.761364
208 12D 0.509615 0.785714
209 NAD IBO 0.509091 0.87013
210 M24 0.508772 0.85
211 YLY 0.508772 0.809524
212 P1H 0.508333 0.851852
213 5AD 0.506849 0.746479
214 GJV 0.505882 0.75
215 LEU LMS 0.505155 0.761364
216 G A A A 0.504505 0.871795
217 4TA 0.504505 0.807229
218 NAJ PZO 0.504425 0.848101
219 KAA 0.5 0.752809
220 NDC 0.5 0.871795
221 7D7 0.5 0.743243
222 71V 0.5 0.907895
223 A3G 0.5 0.8
224 128 0.5 0.776471
225 GSU 0.5 0.77907
226 N0B 0.495726 0.819277
227 NJP 0.495495 0.945946
228 ODP 0.495495 0.909091
229 2SA 0.494624 0.932432
230 6C6 0.494505 0.881579
231 SFG 0.494382 0.75
232 0WD 0.491071 0.921053
233 YSA 0.490196 0.77907
234 PO4 PO4 A A A A PO4 0.489796 0.902778
235 6IA 0.48913 0.8375
236 SAM 0.48913 0.690476
237 A7D 0.488636 0.776316
238 6FA 0.488 0.841463
239 FB0 0.487805 0.804598
240 NAJ PYZ 0.487179 0.85
241 IDP 0.483516 0.918919
242 A5D 0.483516 0.786667
243 SA8 0.483516 0.707317
244 MHZ 0.483146 0.697674
245 PGS 0.483146 0.883117
246 D5M 0.482353 0.878378
247 DA 0.482353 0.878378
248 NEC 0.482353 0.746667
249 NIA 0.481928 0.822785
250 Y3J 0.480519 0.726027
251 FAD 0.480315 0.851852
252 FAS 0.480315 0.851852
253 FDA 0.48 0.833333
254 N6P 0.479592 0.915493
255 GGZ 0.479167 0.825
256 SAH 0.478261 0.74359
257 SAI 0.478261 0.734177
258 NPW 0.477477 0.886076
259 NDP 0.477477 0.921053
260 AAM 0.476744 0.971429
261 AMZ 0.47561 0.916667
262 C2R 0.47561 0.90411
263 A A A 0.474747 0.905405
264 GTP 0.473684 0.92
265 U A G G 0.473684 0.883117
266 SMM 0.473684 0.686047
267 TXP 0.473214 0.921053
268 NZQ 0.473214 0.909091
269 A3S 0.47191 0.810811
270 AMP NAD 0.470588 0.881579
271 SFD 0.46875 0.734043
272 AIR 0.468354 0.901408
273 AAT 0.468085 0.707317
274 EEM 0.468085 0.690476
275 Z5A 0.466667 0.77907
276 7C5 0.466667 0.818182
277 J7V 0.466667 0.833333
278 62F 0.465649 0.8625
279 FAY 0.462121 0.8625
280 ETB 0.461538 0.833333
281 DCA 0.461538 0.823529
282 A3T 0.461538 0.821918
283 A6D 0.46 0.722892
284 A U 0.459459 0.87013
285 6K6 0.459184 0.930556
286 GEK 0.459184 0.7375
287 RFL 0.458647 0.821429
288 S7M 0.458333 0.690476
289 NAP 0.458333 0.945205
290 4YB 0.457944 0.761364
291 WSA 0.454545 0.788235
292 TAP 0.454545 0.907895
293 FNK 0.454545 0.804598
294 COA 0.453782 0.823529
295 0T1 0.453782 0.823529
296 101 0.453488 0.878378
297 XNP 0.452174 0.873418
298 NA0 0.45082 0.932432
299 7RP 0.448276 0.928571
300 GP3 0.446809 0.921053
301 TM1 0.446602 0.77381
302 APU 0.446429 0.894737
303 PUA 0.445378 0.884615
304 V1N 0.443396 0.917808
305 7RA 0.443182 0.957747
306 30N 0.442623 0.752688
307 CAO 0.442623 0.795455
308 AMX 0.442623 0.833333
309 COS 0.442623 0.804598
310 ACK 0.44186 0.861111
311 QQY 0.44186 0.815789
312 649 0.441441 0.744444
313 0UM 0.44 0.698795
314 NHD 0.439655 0.905405
315 CMX 0.439024 0.823529
316 SCO 0.439024 0.823529
317 GCP 0.438776 0.896104
318 8BR 0.438202 0.906667
319 GNH 0.4375 0.907895
320 3AD 0.4375 0.805556
321 62X 0.435644 0.666667
322 ACO 0.435484 0.795455
323 FCX 0.435484 0.795455
324 FAM 0.435484 0.804598
325 GNP 0.434343 0.896104
326 NMX 0.433071 0.76087
327 MGP 0.43299 0.884615
328 PLP AAD 0.432203 0.741573
329 26A 0.432099 0.763158
330 HAX 0.432 0.804598
331 K15 0.431373 0.682353
332 DG1 0.430894 0.921053
333 1DG 0.430894 0.921053
334 QQX 0.430233 0.805195
335 2VA 0.430108 0.8
336 S8M 0.43 0.759494
337 2MC 0.429688 0.769231
338 3KK 0.428571 0.804598
339 6G0 0.428571 0.884615
340 FYN 0.428571 0.823529
341 P5F 0.428571 0.823529
342 NAD BBN 0.428571 0.841463
343 U G A 0.427481 0.839506
344 AS 0.426966 0.833333
345 FAI 0.426966 0.916667
346 RMB 0.426966 0.873239
347 1RB 0.425287 0.885714
348 MCD 0.425197 0.804598
349 OXK 0.425197 0.804598
350 COK 0.425197 0.804598
351 CA6 0.425197 0.729167
352 SOP 0.425197 0.804598
353 G1R 0.424242 0.907895
354 CC5 0.423077 0.816901
355 SXZ 0.423077 0.710843
356 F2N 0.422535 0.813953
357 NAD CJ3 0.422222 0.811765
358 ANZ 0.422018 0.8
359 CMC 0.421875 0.804598
360 CO6 0.421875 0.804598
361 1VU 0.421875 0.795455
362 ZDA 0.421053 0.864865
363 GDD 0.420561 0.884615
364 GKE 0.420561 0.884615
365 GDC 0.420561 0.884615
366 NFD 0.420168 0.883117
367 GSP 0.42 0.873418
368 D3Y 0.42 0.789474
369 MC4 0.419847 0.76087
370 3L1 0.419753 0.773333
371 3D1 0.419753 0.773333
372 FA9 0.41958 0.864198
373 5GP 0.419355 0.906667
374 G 0.419355 0.906667
375 KB1 0.419048 0.698795
376 SCD 0.418605 0.823529
377 CAJ 0.418605 0.804598
378 2BA 0.417582 0.915493
379 CMP 0.417582 0.901408
380 SO8 0.416667 0.789474
381 N01 0.416667 0.905405
382 VRT 0.416667 0.769231
383 3HC 0.415385 0.813953
384 A1S 0.415385 0.804598
385 BCO 0.415385 0.804598
386 IVC 0.415385 0.813953
387 MLC 0.415385 0.804598
388 1HE 0.415385 0.786517
389 NMN AMP PO4 0.415254 0.87013
390 2FA 0.414634 0.813333
391 MGO 0.414141 0.860759
392 3NZ 0.413462 0.782051
393 MCA 0.412214 0.795455
394 CAA 0.412214 0.813953
395 YE1 0.412214 0.813953
396 COO 0.412214 0.804598
397 GAV 0.411765 0.884615
398 P2P 0.411111 0.902778
399 JLN 0.411111 0.890411
400 ZZB 0.410256 0.77381
401 CNV FAD 0.410072 0.793103
402 SCA 0.409091 0.804598
403 RP1 0.409091 0.842105
404 103 0.409091 0.837838
405 2CP 0.409091 0.795455
406 SP1 0.409091 0.842105
407 PAX 0.408 0.829268
408 FAD NBT 0.407143 0.75
409 NVA 2AD 0.40625 0.74359
410 COW 0.406015 0.795455
411 BYC 0.406015 0.804598
412 2KQ 0.406015 0.786517
413 COF 0.406015 0.786517
414 3CP 0.406015 0.804598
415 IRC 0.406015 0.813953
416 1GZ 0.406015 0.795455
417 HGG 0.406015 0.804598
418 CA8 0.406015 0.729167
419 G2P 0.405941 0.884615
420 SLU 0.404959 0.770115
421 U A C C 0.404959 0.858974
422 RBZ 0.404494 0.849315
423 1CZ 0.404412 0.795455
424 BCA 0.402985 0.795455
425 FAQ 0.402985 0.804598
426 4CA 0.402985 0.795455
427 MTP 0.402439 0.730769
428 8OD 0.402062 0.945205
429 CO7 0.401515 0.804598
430 DAL FAD PER 0.401408 0.809524
431 G2R 0.4 0.884615
432 HXC 0.4 0.786517
433 ENQ 0.4 0.916667
434 GMV 0.4 0.896104
435 GRA 0.4 0.804598
Ligand no: 2; Ligand: RIB; Similar ligands found: 105
No: Ligand ECFP6 Tc MDL keys Tc
1 Z6J 1 1
2 RIB 1 1
3 AHR 1 1
4 FUB 1 1
5 32O 1 1
6 MAN 0.653846 0.866667
7 BGC 0.653846 0.866667
8 GAL 0.653846 0.866667
9 ALL 0.653846 0.866667
10 WOO 0.653846 0.866667
11 GIV 0.653846 0.866667
12 BMA 0.653846 0.866667
13 GLA 0.653846 0.866667
14 GXL 0.653846 0.866667
15 GLC 0.653846 0.866667
16 FUB AHR 0.486486 0.875
17 AHR AHR 0.486486 0.875
18 GAF 0.483871 0.764706
19 GCS 0.483871 0.684211
20 G3F 0.483871 0.764706
21 PA1 0.483871 0.684211
22 SHG 0.483871 0.764706
23 G2F 0.483871 0.764706
24 1GN 0.483871 0.684211
25 2FG 0.483871 0.764706
26 X6X 0.483871 0.684211
27 2H5 0.483871 0.764706
28 3MG 0.46875 0.764706
29 SR1 0.466667 0.764706
30 2GS 0.454545 0.764706
31 AHR AHR AHR 0.45 0.875
32 FUB AHR AHR 0.45 0.875
33 RP5 0.441176 0.675
34 ABF 0.441176 0.675
35 HSX 0.441176 0.675
36 GAL BGC 0.439024 0.742857
37 MAL MAL 0.439024 0.722222
38 GAL GLC 0.439024 0.742857
39 CBK 0.439024 0.742857
40 MAL 0.439024 0.742857
41 N9S 0.439024 0.742857
42 BMA GAL 0.439024 0.742857
43 BGC GLC 0.439024 0.742857
44 GLA GAL 0.439024 0.742857
45 LAT 0.439024 0.742857
46 BGC BMA 0.439024 0.742857
47 BGC GAL 0.439024 0.742857
48 CBI 0.439024 0.742857
49 GLA GLA 0.439024 0.742857
50 LBT 0.439024 0.742857
51 GLC GAL 0.439024 0.742857
52 BMA BMA 0.439024 0.742857
53 MAB 0.439024 0.742857
54 GLC BGC 0.439024 0.742857
55 B2G 0.439024 0.742857
56 TRE 0.424242 0.742857
57 YIO 0.419355 0.757576
58 GLF 0.40625 0.735294
59 ALX 0.405405 0.619048
60 BNX 0.405405 0.619048
61 M3M 0.404762 0.742857
62 MAN GLC 0.404762 0.742857
63 LB2 0.404762 0.742857
64 GLA GAL GLC 0.4 0.742857
65 ASO 0.4 0.757576
66 MTT 0.4 0.742857
67 DXI 0.4 0.742857
68 CEX 0.4 0.742857
69 CE6 0.4 0.742857
70 MAN BMA BMA BMA BMA 0.4 0.742857
71 BGC BGC BGC BGC BGC BGC 0.4 0.742857
72 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.4 0.742857
73 BGC GLC GLC GLC GLC 0.4 0.742857
74 GLC GLC GLC GLC GLC GLC GLC 0.4 0.742857
75 GAL GAL GAL 0.4 0.742857
76 MAN MAN BMA BMA BMA BMA 0.4 0.742857
77 BMA BMA BMA BMA BMA 0.4 0.742857
78 B4G 0.4 0.742857
79 BGC GLC GLC GLC GLC GLC GLC 0.4 0.742857
80 GLC GAL GAL 0.4 0.742857
81 BMA MAN BMA 0.4 0.742857
82 BGC GLC GLC 0.4 0.742857
83 GLC BGC BGC BGC BGC BGC 0.4 0.742857
84 CTT 0.4 0.742857
85 GLC GLC BGC GLC GLC GLC GLC 0.4 0.742857
86 CT3 0.4 0.742857
87 GLC BGC BGC 0.4 0.742857
88 GLC GLC GLC GLC GLC GLC GLC GLC 0.4 0.742857
89 GLC BGC GLC 0.4 0.742857
90 CEY 0.4 0.742857
91 MLR 0.4 0.742857
92 BMA BMA MAN 0.4 0.722222
93 MAN BMA BMA 0.4 0.742857
94 GLC GLC GLC GLC GLC 0.4 0.742857
95 BGC GLC GLC GLC 0.4 0.742857
96 GLC GLC BGC 0.4 0.742857
97 BMA BMA BMA BMA BMA BMA 0.4 0.742857
98 CE5 0.4 0.742857
99 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.4 0.742857
100 CTR 0.4 0.742857
101 GLC BGC BGC BGC BGC 0.4 0.742857
102 BGC BGC BGC GLC 0.4 0.742857
103 BMA BMA BMA 0.4 0.742857
104 MT7 0.4 0.742857
105 CE8 0.4 0.742857
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4XDA; Ligand: ADP; Similar sites found: 51
This union binding pocket(no: 1) in the query (biounit: 4xda.bio2) has 33 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3CV2 OXL 0.02967 0.40888 1.94175
2 2CUN 3PG 0.02816 0.40761 1.94175
3 2XT3 ADP 0.03631 0.40647 2.589
4 5HCN GCP 0.02553 0.40512 2.68199
5 4MGA 27L 0.04139 0.40751 2.7451
6 2F5X ASP 0.0104 0.44 2.88462
7 3B6C SDN 0.01029 0.43795 2.99145
8 2J5V PCA 0.01795 0.43316 3.23625
9 1GQY ACP 0.01842 0.40529 3.23625
10 2CFM AMP 0.03659 0.40068 3.23625
11 5V1B 8UY 0.0226 0.41958 3.33333
12 3AB4 THR 0.01808 0.41644 3.37079
13 2DT9 THR 0.02208 0.41592 4.19162
14 4MA6 28E 0.01485 0.42941 4.4586
15 5FJJ MAN 0.001897 0.41905 4.85437
16 1X8D RNS 0.03209 0.41172 4.85437
17 5BU2 ADP 0.03045 0.40128 4.85437
18 4AZT LY2 0.01467 0.42108 5.50162
19 1XPJ TLA 0.0007459 0.50066 5.55556
20 2HW1 ANP 0.001825 0.42229 6.71141
21 3BPX SAL 0.008807 0.44408 6.75676
22 3NC9 TR3 0.0000000004415 0.6648 6.79612
23 2R5V HHH 0.02371 0.40674 6.79612
24 5F1H 5U6 0.02493 0.41314 7.31707
25 1P0Z FLC 0.03253 0.41112 7.63359
26 3IT7 TLA 0.02596 0.41174 7.69231
27 4RW3 TDA 0.00412 0.42074 8.27815
28 4RW3 IPD 0.04035 0.40209 8.27815
29 4O4Z N2O 0.01217 0.42304 9.74026
30 4EN4 GT1 0.001293 0.41961 10.0324
31 4EN4 ATP 0.001293 0.41961 10.0324
32 4EN4 GT0 0.001293 0.41961 10.0324
33 1EPB REA 0.01704 0.40691 11.5854
34 1O4T OXL 0.00883 0.42584 12.782
35 2JG1 ANP 0.00000001953 0.65495 13.5922
36 2JG1 TA6 0.00003993 0.55149 13.5922
37 2JGV ADP 0.000004634 0.40542 13.5922
38 4C5N PXL 0.00005525 0.45879 16.3043
39 4C5N ACP 0.00008165 0.45749 16.3043
40 3CQD ATP 0.00004756 0.50998 16.8285
41 2J5B TYE 0.02011 0.4265 17.7994
42 4XF6 LIP 0.00000001862 0.57628 20.5128
43 4XF6 INS 0.00000001862 0.57628 20.5128
44 4XF6 ADP 0.00000002383 0.55873 20.5128
45 2ABS ACP 0.000000002784 0.63657 26.893
46 3B1Q NOS 0.000006315 0.56325 31.3916
47 2I6A 5I5 0.00001171 0.54471 32.0388
48 3LOO B4P 0.000000000005531 0.72917 32.6861
49 3OTX AP5 0.000000005174 0.61412 37.5405
50 2C49 ANP 0.00000001435 0.66082 41.0596
51 2C49 ADN 0.000003574 0.57473 41.0596
Pocket No.: 2; Query (leader) PDB : 4XDA; Ligand: RIB; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 4xda.bio2) has 10 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 4XDA; Ligand: ADP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 4xda.bio2) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 4XDA; Ligand: RIB; Similar sites found: 51
This union binding pocket(no: 4) in the query (biounit: 4xda.bio2) has 33 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3CV2 OXL 0.02967 0.40888 1.94175
2 2CUN 3PG 0.02816 0.40761 1.94175
3 2XT3 ADP 0.03631 0.40647 2.589
4 5HCN GCP 0.02553 0.40512 2.68199
5 4MGA 27L 0.04139 0.40751 2.7451
6 2F5X ASP 0.0104 0.44 2.88462
7 3B6C SDN 0.01029 0.43795 2.99145
8 2J5V PCA 0.01795 0.43316 3.23625
9 1GQY ACP 0.01842 0.40529 3.23625
10 2CFM AMP 0.03659 0.40068 3.23625
11 5V1B 8UY 0.0226 0.41958 3.33333
12 3AB4 THR 0.01808 0.41644 3.37079
13 2DT9 THR 0.02208 0.41592 4.19162
14 4MA6 28E 0.01485 0.42941 4.4586
15 5FJJ MAN 0.001897 0.41905 4.85437
16 1X8D RNS 0.03209 0.41172 4.85437
17 5BU2 ADP 0.03045 0.40128 4.85437
18 4AZT LY2 0.01467 0.42108 5.50162
19 1XPJ TLA 0.0007459 0.50066 5.55556
20 2HW1 ANP 0.001825 0.42229 6.71141
21 3BPX SAL 0.008807 0.44408 6.75676
22 3NC9 TR3 0.0000000004415 0.6648 6.79612
23 2R5V HHH 0.02371 0.40674 6.79612
24 5F1H 5U6 0.02493 0.41314 7.31707
25 1P0Z FLC 0.03253 0.41112 7.63359
26 3IT7 TLA 0.02596 0.41174 7.69231
27 4RW3 TDA 0.00412 0.42074 8.27815
28 4RW3 IPD 0.04035 0.40209 8.27815
29 4O4Z N2O 0.01217 0.42304 9.74026
30 4EN4 GT1 0.001293 0.41961 10.0324
31 4EN4 ATP 0.001293 0.41961 10.0324
32 4EN4 GT0 0.001293 0.41961 10.0324
33 1EPB REA 0.01704 0.40691 11.5854
34 1O4T OXL 0.00883 0.42584 12.782
35 2JG1 ANP 0.00000001953 0.65495 13.5922
36 2JG1 TA6 0.00003993 0.55149 13.5922
37 2JGV ADP 0.000004634 0.40542 13.5922
38 4C5N PXL 0.00005525 0.45879 16.3043
39 4C5N ACP 0.00008165 0.45749 16.3043
40 3CQD ATP 0.00004756 0.50998 16.8285
41 2J5B TYE 0.02011 0.4265 17.7994
42 4XF6 LIP 0.00000001862 0.57628 20.5128
43 4XF6 INS 0.00000001862 0.57628 20.5128
44 4XF6 ADP 0.00000002383 0.55873 20.5128
45 2ABS ACP 0.000000002784 0.63657 26.893
46 3B1Q NOS 0.000006315 0.56325 31.3916
47 2I6A 5I5 0.00001171 0.54471 32.0388
48 3LOO B4P 0.000000000005531 0.72917 32.6861
49 3OTX AP5 0.000000005174 0.61412 37.5405
50 2C49 ANP 0.00000001435 0.66082 41.0596
51 2C49 ADN 0.000003574 0.57473 41.0596
Pocket No.: 5; Query (leader) PDB : 4XDA; Ligand: ADP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 4xda.bio1) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 4XDA; Ligand: RIB; Similar sites found: 53
This union binding pocket(no: 6) in the query (biounit: 4xda.bio1) has 16 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3BY8 MLT 0.0112 0.40824 1.40845
2 3GGO NAI 0.03857 0.40897 2.26537
3 3GGO ENO 0.03857 0.40897 2.26537
4 2CYB TYR 0.01596 0.40305 2.26537
5 1ZAP A70 0.01802 0.41292 2.589
6 2CWH PYC 0.02547 0.4099 2.589
7 3RGA LSB 0.00898 0.41018 2.82686
8 4FFG 0U8 0.01668 0.41269 2.91262
9 5MY8 RXZ 0.02354 0.40172 2.91262
10 1TLL NAP 0.01129 0.41909 3.05233
11 4JGX PLM 0.007273 0.4124 3.10078
12 4TW7 37K 0.02612 0.40086 3.125
13 4FBL SPD 0.006576 0.40567 3.20285
14 2YG2 FLC 0.01584 0.41175 3.48837
15 2YG2 S1P 0.01285 0.41175 3.48837
16 3MJY FMN 0.01933 0.41495 3.55987
17 3MJY IJZ 0.01933 0.41495 3.55987
18 2XIQ MLC 0.02867 0.40387 3.55987
19 2XMY CDK 0.04073 0.41958 4.02685
20 1UA4 BGC 0.000003351 0.55508 4.20712
21 1UA4 GLC 0.000003351 0.55508 4.20712
22 5M45 AMP 0.01067 0.4066 4.20712
23 4R74 F6P 0.02009 0.40058 4.20712
24 2D24 XYS XYS 0.01833 0.40052 4.20712
25 5XDT MB3 0.03825 0.40076 4.22078
26 1ERB ETR 0.01721 0.41131 4.37158
27 3IES M24 0.0292 0.40789 4.53074
28 2E5V FAD 0.04599 0.40727 4.53074
29 2YAJ 4HP 0.009679 0.40426 4.65116
30 1U1W 3HA 0.01075 0.40433 4.69799
31 5IH9 6BF 0.03853 0.40163 4.77612
32 3A4X NAG NAG NAG NDG 0.01525 0.41395 4.85437
33 5LNE A2G GAL 0.007254 0.40985 4.87805
34 3LCC SAH 0.01169 0.40669 5.10638
35 1JP4 AMP 0.01449 0.40023 5.19481
36 5BV6 35G 0.0144 0.40419 5.26316
37 1U7Z PMT 0.03617 0.40202 5.30973
38 3KJS DQ1 0.02522 0.41012 5.82524
39 1REQ DCA 0.02224 0.42166 6.14887
40 1ZPD DPX 0.02622 0.40465 6.14887
41 4NM5 ADP 0.0139 0.41006 6.47249
42 4NMC 2OP 0.04396 0.40061 6.47249
43 4NMC FAD 0.04581 0.40061 6.47249
44 2HW1 FRU 0.002079 0.45403 6.71141
45 2GJ5 VD3 0.03899 0.40335 6.79012
46 1BXG NAD 0.0275 0.40106 7.76699
47 4MDH NAD 0.01784 0.41187 8.73786
48 1T3Q FAD 0.03783 0.40499 8.92857
49 4OMJ 2TX 0.01542 0.41998 8.99281
50 2CM4 RCL 0.006536 0.42447 9.33333
51 5A89 ADP 0.03636 0.40863 12.8205
52 2ZYI STE 0.02088 0.40433 13.9159
53 5K2M ADP 0.01509 0.40987 30.1887
Pocket No.: 7; Query (leader) PDB : 4XDA; Ligand: ADP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 4xda.bio1) has 34 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 4XDA; Ligand: ADP; Similar sites found: 25
This union binding pocket(no: 8) in the query (biounit: 4xda.bio1) has 35 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3RF4 FUN 0.0399 0.4083 1.72414
2 3CV2 COA 0.01194 0.43871 1.94175
3 2Q8E OGA 0.04922 0.40407 1.94175
4 2CBZ ATP 0.0396 0.41304 2.1097
5 3GQT UFO 0.01312 0.42186 2.26537
6 4R43 GDP 0.01904 0.4175 2.26537
7 2GVV DI9 0.01156 0.43753 2.91262
8 4RKK GLC GLC GLC GLC GLC GLC 0.03052 0.40004 2.91262
9 3SHR CMP 0.03265 0.40537 3.01003
10 2R5A MLZ 0.03088 0.4025 3.39623
11 2FAH GDP 0.02397 0.40198 3.8835
12 4WVW SLT 0.01546 0.41698 4.16667
13 2VEG PMM 0.04111 0.40375 4.4586
14 3P9T TCL 0.04027 0.40063 4.56621
15 5N18 8HZ 0.02494 0.422 4.58716
16 4HNN LYS 0.0389 0.4103 4.62428
17 1YQT ADP 0.02041 0.42712 4.85437
18 5LNE A2G GAL 0.03124 0.40269 4.87805
19 5V4R MGT 0.008676 0.45319 4.93827
20 1GEG GLC 0.0308 0.40709 6.25
21 5LX9 OLA 0.01586 0.41063 6.47249
22 1SBR VIB 0.03828 0.40929 6.5
23 2GBB CIT 0.04051 0.40409 9.61539
24 1Y7P RIP 0.02693 0.41363 9.86547
25 1V1A ADP 0.003992 0.41571 39.8058
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