Receptor
PDB id Resolution Class Description Source Keywords
4WJT 1.21 Å NON-ENZYME: OTHER STATIONARY PHASE SURVIVAL PROTEIN YUIC FROM B.SUBTILIS COMPL NAG BACILLUS SUBTILIS SUBSP. SUBTILIS STR.ORGANISM_TAXID: 224308 LYTIC TRANSGLYCOSYLASE PEPTIDOGLYCAN REMODELLING STATIONARMLTA LYASE
Ref.: STRUCTURE OF THE STATIONARY PHASE SURVIVAL PROTEIN B.SUBTILIS. BMC STRUCT.BIOL. V. 15 12 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
DMS B:304;
A:302;
B:303;
B:305;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
78.133 C2 H6 O S CS(=O...
NAG A:301;
B:301;
Valid;
Valid;
none;
Atoms found MORE than expected: % Diff = 2;
submit data
221.208 C8 H15 N O6 CC(=O...
3P9 B:302;
Invalid;
none;
submit data
192.253 C9 H20 O4 C[C@@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4WJT 1.21 Å NON-ENZYME: OTHER STATIONARY PHASE SURVIVAL PROTEIN YUIC FROM B.SUBTILIS COMPL NAG BACILLUS SUBTILIS SUBSP. SUBTILIS STR.ORGANISM_TAXID: 224308 LYTIC TRANSGLYCOSYLASE PEPTIDOGLYCAN REMODELLING STATIONARMLTA LYASE
Ref.: STRUCTURE OF THE STATIONARY PHASE SURVIVAL PROTEIN B.SUBTILIS. BMC STRUCT.BIOL. V. 15 12 2015
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 4WJT - NAG C8 H15 N O6 CC(=O)N[C@....
2 4WLK - 3QL C16 H26 N2 O10 CC(=O)N[C@....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 4WJT - NAG C8 H15 N O6 CC(=O)N[C@....
2 4WLK - 3QL C16 H26 N2 O10 CC(=O)N[C@....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 4WJT - NAG C8 H15 N O6 CC(=O)N[C@....
2 4WLK - 3QL C16 H26 N2 O10 CC(=O)N[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAG; Similar ligands found: 109
No: Ligand ECFP6 Tc MDL keys Tc
1 NAG 1 1
2 HSQ 1 1
3 NGA 1 1
4 A2G 1 1
5 NDG 1 1
6 BM3 1 1
7 BGN 0.638298 0.888889
8 SIZ 0.630435 0.906977
9 YX1 0.625 0.65
10 GAL NGA A2G 0.614035 0.816327
11 STZ 0.612245 0.65
12 16G 0.591837 0.735849
13 BMX 0.591837 0.735849
14 4QY 0.591837 0.735849
15 SNG 0.5625 0.866667
16 NGS 0.54902 0.661017
17 NAG GDL 0.54386 0.833333
18 CBS 0.54386 0.833333
19 CBS CBS 0.54386 0.833333
20 NAG NDG 0.54386 0.833333
21 ASG 0.538462 0.661017
22 BG8 0.537037 0.906977
23 2F8 0.530612 0.909091
24 MAG 0.530612 0.909091
25 NLC 0.517857 0.888889
26 GAL NDG 0.517857 0.888889
27 NDG GAL 0.517857 0.888889
28 NAG A2G 0.517241 0.833333
29 4V5 0.517241 0.829787
30 NAG NGA 0.517241 0.833333
31 MAN NAG 0.508772 0.888889
32 4UZ 0.508475 0.808511
33 NDG NAG NAG 0.508197 0.816327
34 CTO 0.508197 0.816327
35 NAG NAG NDG 0.508197 0.816327
36 NAG NAG NAG NDG 0.508197 0.816327
37 NAG NAG NAG NAG NAG NAG NAG NAG 0.508197 0.816327
38 NDG NAG NAG NDG 0.508197 0.816327
39 NAG NAG NAG NAG 0.508197 0.816327
40 NAG NAG NAG 0.508197 0.816327
41 NAG NAG NAG NAG NDG NAG 0.508197 0.816327
42 NAG NAG NAG NAG NAG NAG 0.508197 0.816327
43 NDG NAG NAG NDG NAG 0.508197 0.816327
44 NDG NAG NAG NAG 0.508197 0.816327
45 NAG NAG NAG NAG NDG 0.508197 0.816327
46 NAG NAG NAG NAG NAG 0.508197 0.816327
47 NBG 0.5 0.951219
48 MQG 0.5 0.698113
49 A2G GAL 0.491228 0.888889
50 GAL A2G 0.491228 0.888889
51 GAL NGA 0.491228 0.888889
52 AMU 0.490909 0.930233
53 GN1 0.490566 0.754717
54 NG1 0.490566 0.754717
55 NDG NAG 0.47541 0.816327
56 NAG GAL 0.474576 0.888889
57 NGA GAL 0.474576 0.888889
58 NAG FUC 0.474576 0.866667
59 GAL NAG 0.474576 0.888889
60 NAG GAL NAG 0.455882 0.833333
61 FUC NAG 0.45 0.888889
62 3YW 0.448276 0.930233
63 GLA GAL NAG 0.446154 0.888889
64 MAN BMA NAG 0.446154 0.888889
65 NAG GAL GAL 0.446154 0.888889
66 FUL GAL NAG 0.426471 0.869565
67 G6S NAG 0.426471 0.677966
68 DR2 0.426471 0.869565
69 FUC GAL NDG 0.426471 0.869565
70 FUC GAL NAG 0.426471 0.869565
71 NDG GAL FUC 0.426471 0.869565
72 GYU 0.42623 0.740741
73 TNR 0.42623 0.833333
74 NAG BDP 0.421875 0.851064
75 NAG MBG 0.419355 0.851064
76 NGA GAL BGC 0.41791 0.888889
77 NAG NAG 0.415385 0.784314
78 AZC 0.415094 0.795918
79 SN5 SN5 0.412698 0.705882
80 MBG A2G 0.412698 0.851064
81 A2G MBG 0.412698 0.851064
82 HS2 0.411765 0.8125
83 5AX 0.411765 0.866667
84 6ZC 0.409091 0.655738
85 LEC 0.409091 0.655738
86 GAL BGC NAG GAL 0.408451 0.888889
87 TCG 0.408451 0.689655
88 CTO TMX 0.408451 0.689655
89 NAG NAG NAG NAG NAG NAG NAG 0.407895 0.740741
90 BMA 0.404762 0.7
91 WOO 0.404762 0.7
92 ALL 0.404762 0.7
93 GLA 0.404762 0.7
94 MAN 0.404762 0.7
95 GAL 0.404762 0.7
96 GLC 0.404762 0.7
97 GXL 0.404762 0.7
98 GIV 0.404762 0.7
99 BGC 0.404762 0.7
100 NAG AMU 0.402778 0.8
101 NAG MUB 0.402778 0.8
102 A2G GAL FUC 0.4 0.869565
103 DR3 0.4 0.869565
104 NAG GAL FUC 0.4 0.869565
105 FUC GL0 A2G 0.4 0.869565
106 A2G GLA FUC 0.4 0.869565
107 FUC GAL A2G 0.4 0.869565
108 NGA GAL FUC 0.4 0.869565
109 FUC GLA A2G 0.4 0.869565
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4WJT; Ligand: NAG; Similar sites found: 29
This union binding pocket(no: 1) in the query (biounit: 4wjt.bio1) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5GM9 CBK 0.00008493 0.50761 None
2 5GM9 CBI 0.00008234 0.47872 None
3 1RE8 BD2 0.01593 0.41598 2.39521
4 2GU8 796 0.02954 0.40902 2.39521
5 2X4Z X4Z 0.006985 0.42296 2.99401
6 5USZ SKE 0.007861 0.41283 2.99401
7 4M0R 644 0.02639 0.40448 2.99401
8 2XMY CDK 0.03356 0.41143 3.59281
9 3F8D FAD 0.04589 0.40894 3.59281
10 4XJC TTP 0.006614 0.40834 4.19162
11 3LAD FAD 0.02383 0.40663 4.19162
12 1GPE FAD 0.02205 0.41078 4.79042
13 2F5Z FAD 0.03086 0.402 4.79042
14 1U1I NAD 0.02122 0.40139 4.79042
15 1Q9I TEO 0.0052 0.44934 5.38922
16 1Q9I FAD 0.0052 0.44934 5.38922
17 2CNE DFJ 0.02484 0.40021 5.98802
18 1UWK NAD 0.01612 0.41742 6.58683
19 1UWK URO 0.01612 0.41742 6.58683
20 4M52 FAD 0.02385 0.40661 6.58683
21 4C2V YJA 0.003284 0.43303 6.81818
22 3WMX THR 0.03767 0.40308 7.78443
23 2B6N ALA PRO THR 0.002161 0.44599 8.38323
24 4WNK 453 0.01167 0.40766 8.38323
25 4URN NOV 0.01782 0.4019 9.58084
26 4L80 OXL 0.02073 0.40304 11.3772
27 3ITJ FAD 0.03072 0.40526 11.976
28 5BVE 4VG 0.02875 0.41296 13.1737
29 2PI8 NAG NAG NAG NAG NAG NAG 0.0000006004 0.61073 22.1557
Pocket No.: 2; Query (leader) PDB : 4WJT; Ligand: NAG; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 4wjt.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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