-->
Receptor
PDB id Resolution Class Description Source Keywords
4UP4 1.95 Å NON-ENZYME: BINDING STRUCTURE OF THE RECOMBINANT LECTIN PVL FROM PSATHYRELLA VEL COMPLEX WITH GLCNACB-D-1,3GALACTOSIDE LACRYMARIA VELUTINA SUGAR-BINDING PROTEIN N-ACETYLGLUCOSAMINE SUGAR BINDING PR
Ref.: A RECOMBINANT FUNGAL LECTIN FOR LABELING TRUNCATED ON HUMAN CANCER CELLS. PLOS ONE V. 10 01281 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GAL NAG A:571;
B:551;
A:601;
B:591;
B:601;
B:581;
A:551;
A:581;
B:571;
A:591;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
Kd = 110 uM
383.35 n/a O=C(N...
CA A:502;
A:500;
B:502;
B:500;
B:501;
A:501;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
submit data
40.078 Ca [Ca+2...
NDG B:562;
A:562;
Valid;
Valid;
none;
none;
submit data
221.208 C8 H15 N O6 CC(=O...
NAG A:563;
Valid;
none;
submit data
221.208 C8 H15 N O6 CC(=O...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4UP4 1.95 Å NON-ENZYME: BINDING STRUCTURE OF THE RECOMBINANT LECTIN PVL FROM PSATHYRELLA VEL COMPLEX WITH GLCNACB-D-1,3GALACTOSIDE LACRYMARIA VELUTINA SUGAR-BINDING PROTEIN N-ACETYLGLUCOSAMINE SUGAR BINDING PR
Ref.: A RECOMBINANT FUNGAL LECTIN FOR LABELING TRUNCATED ON HUMAN CANCER CELLS. PLOS ONE V. 10 01281 2015
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 2C25 - SIA C11 H19 N O9 CC(=O)N[C@....
2 4UP4 Kd = 110 uM GAL NAG n/a n/a
3 2BWM - SNG C9 H17 N O5 Se CC(=O)N[C@....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 2C25 - SIA C11 H19 N O9 CC(=O)N[C@....
2 4UP4 Kd = 110 uM GAL NAG n/a n/a
3 2BWM - SNG C9 H17 N O5 Se CC(=O)N[C@....
4 4TQK Kd = 28.31 uM NAG C8 H15 N O6 CC(=O)N[C@....
5 4TQM Kd = 41.65 uM NAG GAL NAG n/a n/a
6 5MB4 Kd = 0.45 uM NAG C8 H15 N O6 CC(=O)N[C@....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 2C25 - SIA C11 H19 N O9 CC(=O)N[C@....
2 4UP4 Kd = 110 uM GAL NAG n/a n/a
3 2BWM - SNG C9 H17 N O5 Se CC(=O)N[C@....
4 4TQK Kd = 28.31 uM NAG C8 H15 N O6 CC(=O)N[C@....
5 4TQM Kd = 41.65 uM NAG GAL NAG n/a n/a
6 5MB4 Kd = 0.45 uM NAG C8 H15 N O6 CC(=O)N[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GAL NAG; Similar ligands found: 168
No: Ligand ECFP6 Tc MDL keys Tc
1 NAG GAL 1 1
2 GAL NAG 1 1
3 GAL NGA A2G 0.881356 0.9375
4 NAG MAN BMA 0.822581 1
5 NAG NGA 0.693548 0.9375
6 NAG MBG 0.693548 0.957447
7 NAG A2G 0.693548 0.9375
8 NAG GAL BGC 0.657143 1
9 NAG GAL GAL NAG GAL 0.652778 0.9375
10 NGA GAL 0.646154 0.93617
11 NAG GDL 0.640625 0.9375
12 NDG NAG 0.640625 0.9375
13 CBS 0.640625 0.9375
14 CBS CBS 0.640625 0.9375
15 NGA GLA GAL BGC 0.635135 1
16 NAG GAL NAG 0.633803 0.9375
17 NAG MAN MAN MAN NAG 0.631579 0.9375
18 NGA GAL BGC 0.623188 1
19 FUC BGC GAL NAG 0.615385 0.978261
20 A2G MBG 0.606061 0.957447
21 MBG A2G 0.606061 0.957447
22 NDG NAG NAG 0.602941 0.918367
23 NAG NDG 0.602941 0.846154
24 NAG NAG NAG NAG NDG 0.602941 0.918367
25 NDG NAG NAG NAG 0.602941 0.918367
26 NAG NAG NDG NAG 0.602941 0.918367
27 CTO 0.602941 0.918367
28 NAG NAG 0.602941 0.846154
29 NAG NAG NAG NAG NAG 0.602941 0.918367
30 NAG NAG NAG NDG 0.602941 0.918367
31 NAG NAG NDG 0.602941 0.918367
32 NDG NAG NAG NDG 0.602941 0.918367
33 NAG NAG NAG NAG NAG NAG NAG NAG 0.602941 0.918367
34 NAG NAG NAG NAG NAG NAG 0.602941 0.918367
35 A2G GLA FUC 0.597222 0.978261
36 FUC GLA A2G 0.597222 0.978261
37 FUC GAL A2G 0.597222 0.978261
38 A2G GAL FUC 0.597222 0.978261
39 NGA GAL FUC 0.597222 0.978261
40 NAG MAN MMA 0.583333 0.957447
41 3QL 0.577465 0.865385
42 MAN MAN NAG 0.567568 0.957447
43 GLA NAG GAL FUC 0.564103 0.978261
44 GAL NAG GAL FUC 0.564103 0.978261
45 NAG MAN MAN 0.56 1
46 M3M 0.559322 0.733333
47 MAG 0.559322 0.893617
48 2F8 0.559322 0.893617
49 MAN GLC 0.559322 0.733333
50 NGR 0.559322 0.733333
51 LB2 0.559322 0.733333
52 BGC FUC GAL FUC A2G 0.548781 0.957447
53 GLC FUC GAL FUC A2G 0.548781 0.957447
54 NAG NAG NAG NAG 0.546667 0.849057
55 NAG NAG NAG 0.546667 0.849057
56 NAG MAN BMA MAN NAG GAL 0.539326 0.9375
57 FUC GAL NAG GAL FUC 0.536585 0.957447
58 NAG AMU 0.532468 0.9
59 AH0 NAG 0.532468 0.833333
60 NAG MUB 0.532468 0.9
61 NAG MAN 0.528571 0.957447
62 GN1 0.52381 0.75
63 NG1 0.52381 0.75
64 Z4S NAG NAG 0.518987 0.849057
65 LAT NAG GAL 0.518987 1
66 GLC GAL NAG GAL 0.518987 1
67 BMA Z4Y NAG 0.518519 0.978261
68 BGC BGC BGC GLC BGC BGC 0.515625 0.733333
69 GLC BGC BGC BGC BGC BGC BGC 0.515625 0.733333
70 NAG BDP NAG BDP NAG BDP NAG 0.511905 0.9
71 3YW 0.507463 0.913043
72 MA8 0.507042 0.843137
73 NAG NM9 0.506494 0.882353
74 GAL NAG GAL NAG GAL NAG 0.506329 0.918367
75 NAG GAL GAL NAG 0.506329 0.9375
76 A2G GAL BGC FUC 0.505882 0.978261
77 NAG GAL 2NA 0.505495 0.882353
78 NOJ NAG NAG NAG 0.5 0.803571
79 A2G GAL 0.5 1
80 GAL NGA 0.5 1
81 GAL A2G 0.5 1
82 NOJ NAG NAG 0.5 0.818182
83 NGT NAG 0.5 0.775862
84 GAL NAG GAL GLC 0.493671 1
85 BGC GAL NAG GAL 0.493671 1
86 A2G GAL NAG FUC 0.488372 0.918367
87 FUC GAL NAG A2G 0.488372 0.918367
88 GAL NGA GLA BGC GAL 0.487805 1
89 DLD 0.4875 0.775862
90 TNR 0.485714 0.86
91 A2G GAL NAG FUC GAL GLC 0.484211 0.918367
92 GLC GAL NAG GAL FUC A2G 0.484211 0.918367
93 FUC BGC GAL NAG GAL 0.483146 0.978261
94 FHY 0.482353 0.849057
95 NAG AH0 0.481928 0.833333
96 GAL NAG GAL BGC 0.481928 0.957447
97 LEC NGA 0.481928 0.703125
98 BMA MAN MAN MAN 0.478261 0.733333
99 NAG GAL FUC FUC A2G 0.477273 0.918367
100 FUC GAL NAG A2G FUC 0.477273 0.918367
101 NAG A2G GAL 0.475 0.9375
102 NDG 0.474576 0.888889
103 BM3 0.474576 0.888889
104 HSQ 0.474576 0.888889
105 NGA 0.474576 0.888889
106 NAG 0.474576 0.888889
107 A2G 0.474576 0.888889
108 SN5 SN5 0.472222 0.803922
109 GAL NAG MAN 0.467532 1
110 P3M 0.465753 0.6
111 GYU 0.464789 0.767857
112 6Y2 0.464286 0.703125
113 NAG NAG NGT 0.464286 0.762712
114 GAL NAG GAL 0.4625 0.957447
115 GLA GAL NAG 0.460526 1
116 MAN BMA NAG 0.460526 1
117 SIA GAL NGA 0.458333 0.865385
118 NLC 0.457143 1
119 GAL NDG 0.457143 1
120 NDG GAL 0.457143 1
121 WZ5 0.455556 0.957447
122 BGA 0.449438 0.818182
123 MMA MAN NAG MAN NAG NAG 0.448276 0.9
124 NAG AMU NAG AMV 0.448276 0.882353
125 NAG BMA NAG MAN MAN NAG NAG 0.447917 0.918367
126 TCG 0.444444 0.775862
127 3PV 0.443182 0.9
128 NAG NAG BMA MAN 0.443182 0.865385
129 NAG NDG BMA 0.439024 0.865385
130 NAG NAG BMA 0.439024 0.865385
131 GAL NAG SIA GAL 0.438095 0.849057
132 GAL MGC 0.43662 0.957447
133 AO3 0.433333 0.692308
134 NAA NAA AMI 0.433333 0.692308
135 HD4 0.43038 0.741379
136 NAG MAN BMA NDG MAN NAG GAL 0.43 0.918367
137 CGC 0.428571 0.733333
138 6ZC 0.428571 0.68254
139 LEC 0.428571 0.68254
140 SIA NAG GAL GAL 0.427184 0.849057
141 NAG NAG BMA MAN MAN NAG GAL NAG 0.425743 0.918367
142 M5G 0.425743 0.9375
143 57S 0.425 0.741379
144 GLC NAG GAL GAL FUC 0.423913 0.978261
145 GAL GLC NAG GAL FUC 0.423913 0.978261
146 FUC GAL NAG GAL BGC 0.423913 0.978261
147 GUM 0.423913 0.803571
148 ALA NAG AH0 DAL 0.421053 0.818182
149 DR3 0.419753 0.978261
150 NAG BMA 0.418919 0.897959
151 NAG NAG BMA MAN NAG 0.418367 0.849057
152 GYT 0.417722 0.762712
153 1GN ACY GAL ACY 1GN BGC GAL BGC 0.417582 0.9375
154 ACY 1GN GAL 1GN BGC ACY GAL BGC 0.417582 0.9375
155 NAG NAG BMA MAN MAN NAG NAG 0.417476 0.849057
156 8VZ 0.416667 0.918367
157 SNG 0.415385 0.816327
158 UMG 0.414894 0.803571
159 AMU 0.414286 0.87234
160 NAG AMU ALA DGL 0.414141 0.833333
161 MAN BMA MAN 0.410959 0.733333
162 NAG MU2 0.41 0.818182
163 NAG GDL PHJ 0.40625 0.737705
164 NAG NAG BMA MAN MAN 0.404255 0.9375
165 NAG BDP 0.402597 0.916667
166 GLA GAL NAG FUC GAL GLC 0.402062 0.978261
167 GC4 NAG 0.4 0.916667
168 JXD 0.4 0.661765
Ligand no: 2; Ligand: NDG; Similar ligands found: 105
No: Ligand ECFP6 Tc MDL keys Tc
1 NGA 1 1
2 NAG 1 1
3 A2G 1 1
4 BM3 1 1
5 HSQ 1 1
6 NDG 1 1
7 BGN 0.638298 0.888889
8 SIZ 0.630435 0.906977
9 YX1 0.625 0.65
10 STZ 0.612245 0.65
11 4QY 0.591837 0.735849
12 BMX 0.591837 0.735849
13 16G 0.591837 0.735849
14 9C1 0.58 0.886364
15 SNG 0.5625 0.866667
16 NGS 0.54902 0.661017
17 NDG NAG 0.54386 0.833333
18 CBS 0.54386 0.833333
19 NAG GDL 0.54386 0.833333
20 CBS CBS 0.54386 0.833333
21 ASG 0.538462 0.661017
22 BG8 0.537037 0.906977
23 MAG 0.530612 0.909091
24 2F8 0.530612 0.909091
25 NDG GAL 0.517857 0.888889
26 NLC 0.517857 0.888889
27 GAL NDG 0.517857 0.888889
28 NAG A2G 0.517241 0.833333
29 4V5 0.517241 0.829787
30 NAG NGA 0.517241 0.833333
31 4UZ 0.508475 0.808511
32 NAG NAG NAG NAG NDG 0.508197 0.816327
33 NDG NAG NAG NAG 0.508197 0.816327
34 NAG NAG NDG 0.508197 0.816327
35 NAG NAG NDG NAG 0.508197 0.816327
36 CTO 0.508197 0.816327
37 NDG NAG NAG NDG 0.508197 0.816327
38 NAG NAG NAG NDG 0.508197 0.816327
39 NDG NAG NAG 0.508197 0.816327
40 NAG NAG NAG NAG NAG 0.508197 0.816327
41 NAG NAG NAG NAG NAG NAG 0.508197 0.816327
42 NAG NAG NAG NAG NAG NAG NAG NAG 0.508197 0.816327
43 MQG 0.5 0.698113
44 NBG 0.5 0.951219
45 GAL NGA 0.491228 0.888889
46 A2G GAL 0.491228 0.888889
47 GAL A2G 0.491228 0.888889
48 AMU 0.490909 0.930233
49 NG1 0.490566 0.754717
50 GN1 0.490566 0.754717
51 NAG GAL 0.474576 0.888889
52 GAL NAG 0.474576 0.888889
53 NAG FUC 0.474576 0.866667
54 NAG GAL NAG 0.455882 0.833333
55 3YW 0.448276 0.930233
56 GLA GAL NAG 0.446154 0.888889
57 MAN BMA NAG 0.446154 0.888889
58 NGA GAL 0.428571 0.869565
59 FUC GAL NAG 0.426471 0.869565
60 GAL NAG FUC 0.426471 0.869565
61 DR2 0.426471 0.869565
62 NAG GAL FUC 0.426471 0.869565
63 NDG GAL FUC 0.426471 0.869565
64 FUC GAL NDG 0.426471 0.869565
65 FUL GAL NAG 0.426471 0.869565
66 G6S NAG 0.426471 0.645161
67 TNR 0.42623 0.833333
68 GYU 0.42623 0.740741
69 GAL NGA A2G 0.424242 0.833333
70 NAG BDP 0.421875 0.851064
71 NAG MBG 0.419355 0.851064
72 NGA GAL BGC 0.41791 0.888889
73 NAG NDG 0.415385 0.784314
74 NAG NAG 0.415385 0.784314
75 AZC 0.415094 0.795918
76 SN5 SN5 0.412698 0.705882
77 A2G MBG 0.412698 0.851064
78 MBG A2G 0.412698 0.851064
79 HS2 0.411765 0.8125
80 5AX 0.411765 0.866667
81 NAG MAN BMA 0.411765 0.888889
82 6ZC 0.409091 0.655738
83 LEC 0.409091 0.655738
84 TCG 0.408451 0.689655
85 GAL BGC NAG GAL 0.408451 0.888889
86 NAG MAN 0.40625 0.851064
87 WOO 0.404762 0.7
88 MAN 0.404762 0.7
89 GAL 0.404762 0.7
90 BGC 0.404762 0.7
91 BMA 0.404762 0.7
92 GLA 0.404762 0.7
93 ALL 0.404762 0.7
94 GLC 0.404762 0.7
95 GXL 0.404762 0.7
96 GIV 0.404762 0.7
97 NAG AMU 0.402778 0.8
98 NAG MUB 0.402778 0.8
99 NAG A2G GAL 0.402778 0.833333
100 A2G GAL FUC 0.4 0.869565
101 FUC GLA A2G 0.4 0.869565
102 DR3 0.4 0.869565
103 A2G GLA FUC 0.4 0.869565
104 NGA GAL FUC 0.4 0.869565
105 FUC GAL A2G 0.4 0.869565
Ligand no: 3; Ligand: NAG; Similar ligands found: 105
No: Ligand ECFP6 Tc MDL keys Tc
1 NGA 1 1
2 NAG 1 1
3 A2G 1 1
4 BM3 1 1
5 HSQ 1 1
6 NDG 1 1
7 BGN 0.638298 0.888889
8 SIZ 0.630435 0.906977
9 YX1 0.625 0.65
10 STZ 0.612245 0.65
11 4QY 0.591837 0.735849
12 BMX 0.591837 0.735849
13 16G 0.591837 0.735849
14 9C1 0.58 0.886364
15 SNG 0.5625 0.866667
16 NGS 0.54902 0.661017
17 NDG NAG 0.54386 0.833333
18 CBS 0.54386 0.833333
19 NAG GDL 0.54386 0.833333
20 CBS CBS 0.54386 0.833333
21 ASG 0.538462 0.661017
22 BG8 0.537037 0.906977
23 MAG 0.530612 0.909091
24 2F8 0.530612 0.909091
25 NDG GAL 0.517857 0.888889
26 NLC 0.517857 0.888889
27 GAL NDG 0.517857 0.888889
28 NAG A2G 0.517241 0.833333
29 4V5 0.517241 0.829787
30 NAG NGA 0.517241 0.833333
31 4UZ 0.508475 0.808511
32 NAG NAG NAG NAG NDG 0.508197 0.816327
33 NDG NAG NAG NAG 0.508197 0.816327
34 NAG NAG NDG 0.508197 0.816327
35 NAG NAG NDG NAG 0.508197 0.816327
36 CTO 0.508197 0.816327
37 NDG NAG NAG NDG 0.508197 0.816327
38 NAG NAG NAG NDG 0.508197 0.816327
39 NDG NAG NAG 0.508197 0.816327
40 NAG NAG NAG NAG NAG 0.508197 0.816327
41 NAG NAG NAG NAG NAG NAG 0.508197 0.816327
42 NAG NAG NAG NAG NAG NAG NAG NAG 0.508197 0.816327
43 MQG 0.5 0.698113
44 NBG 0.5 0.951219
45 GAL NGA 0.491228 0.888889
46 A2G GAL 0.491228 0.888889
47 GAL A2G 0.491228 0.888889
48 AMU 0.490909 0.930233
49 NG1 0.490566 0.754717
50 GN1 0.490566 0.754717
51 NAG GAL 0.474576 0.888889
52 GAL NAG 0.474576 0.888889
53 NAG FUC 0.474576 0.866667
54 NAG GAL NAG 0.455882 0.833333
55 3YW 0.448276 0.930233
56 GLA GAL NAG 0.446154 0.888889
57 MAN BMA NAG 0.446154 0.888889
58 NGA GAL 0.428571 0.869565
59 FUC GAL NAG 0.426471 0.869565
60 GAL NAG FUC 0.426471 0.869565
61 DR2 0.426471 0.869565
62 NAG GAL FUC 0.426471 0.869565
63 NDG GAL FUC 0.426471 0.869565
64 FUC GAL NDG 0.426471 0.869565
65 FUL GAL NAG 0.426471 0.869565
66 G6S NAG 0.426471 0.645161
67 TNR 0.42623 0.833333
68 GYU 0.42623 0.740741
69 GAL NGA A2G 0.424242 0.833333
70 NAG BDP 0.421875 0.851064
71 NAG MBG 0.419355 0.851064
72 NGA GAL BGC 0.41791 0.888889
73 NAG NDG 0.415385 0.784314
74 NAG NAG 0.415385 0.784314
75 AZC 0.415094 0.795918
76 SN5 SN5 0.412698 0.705882
77 A2G MBG 0.412698 0.851064
78 MBG A2G 0.412698 0.851064
79 HS2 0.411765 0.8125
80 5AX 0.411765 0.866667
81 NAG MAN BMA 0.411765 0.888889
82 6ZC 0.409091 0.655738
83 LEC 0.409091 0.655738
84 TCG 0.408451 0.689655
85 GAL BGC NAG GAL 0.408451 0.888889
86 NAG MAN 0.40625 0.851064
87 WOO 0.404762 0.7
88 MAN 0.404762 0.7
89 GAL 0.404762 0.7
90 BGC 0.404762 0.7
91 BMA 0.404762 0.7
92 GLA 0.404762 0.7
93 ALL 0.404762 0.7
94 GLC 0.404762 0.7
95 GXL 0.404762 0.7
96 GIV 0.404762 0.7
97 NAG AMU 0.402778 0.8
98 NAG MUB 0.402778 0.8
99 NAG A2G GAL 0.402778 0.833333
100 A2G GAL FUC 0.4 0.869565
101 FUC GLA A2G 0.4 0.869565
102 DR3 0.4 0.869565
103 A2G GLA FUC 0.4 0.869565
104 NGA GAL FUC 0.4 0.869565
105 FUC GAL A2G 0.4 0.869565
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4UP4; Ligand: NAG; Similar sites found with APoc: 196
This union binding pocket(no: 1) in the query (biounit: 4up4.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 6GAQ FMN 1.2987
2 2ZJ3 G6P 1.33333
3 1MOQ GLP 1.3587
4 2C0U FAD NBT 1.49626
5 1U1I NAD 1.53061
6 3ZQ6 ADP ALF 1.54321
7 4B1W ATP 1.59574
8 2FXU ATP 1.6
9 3MN7 ATP 1.60428
10 3MN6 ATP 1.60428
11 6B0K 9RN G4S 9RN G4S 1.74564
12 6B0K G4S 9RN G4S 9RN G4S 1.74564
13 4EDF UPG 1.74564
14 4A2A ATP 1.74564
15 2BEK ATP 1.94553
16 3B4Y F42 1.96629
17 4QYS PLR 1.99501
18 3FC4 EDO 1.99501
19 2QA1 FAD 1.99501
20 3FJO FMN 1.99501
21 3A1I UNU 1.99501
22 4CZG ADP 2.01149
23 4CZG QH3 2.01149
24 2YYY NAP 2.04082
25 1JQI FAD 2.06186
26 2RHW C0E 2.12014
27 5TUK FAD 2.24439
28 4ZY1 4U5 2.24439
29 3VYW SAM 2.27273
30 3PFD FDA 2.29008
31 4GID 0GH 2.31959
32 1U9Q 186 2.32558
33 4C3Y FAD 2.49377
34 4C3Y ANB 2.49377
35 3NRR NAP 2.49377
36 3NRR D16 2.49377
37 5MPT SAH 2.49377
38 3WCZ CIT 2.5974
39 5E72 SAM 2.60116
40 4DR9 BB2 2.60417
41 2O07 MTA 2.63158
42 2O07 SPD 2.63158
43 3B1J NAD 2.65487
44 3FCI 3FI 2.69058
45 1G60 SAM 2.69231
46 1RHC F42 ACN 2.72727
47 4EU7 CIT 2.74314
48 4EU7 COA 2.74314
49 4ZLU ADP 2.74314
50 4ZLU 4PW 2.74314
51 5JWC FAD 2.74314
52 3AYI HCI 2.74314
53 2Z6J FMN 2.74314
54 2WC1 FMN 2.74725
55 5GJO PLP 2.79188
56 1DQS NAD 2.79898
57 5EOB 5QQ 2.82132
58 2JAH NDP 2.83401
59 1Q7B NAP 2.86885
60 3C3N FMN 2.88462
61 1OVD ORO 2.89389
62 1OVD FMN 2.89389
63 4JNE ATP 2.99252
64 1X92 M7P 3.01508
65 2A14 SAH 3.04183
66 1RX0 FAD 3.05344
67 3UWV 2PG 3.06513
68 1EZ4 NAD 3.14465
69 4D5G FAD 3.2419
70 4D5G TPP 3.2419
71 4LZJ 22H 3.30033
72 2V2V V12 3.32103
73 6GAS FAD 3.32326
74 3RK1 ATP 3.37553
75 5N0J FAD 3.4188
76 4ORM 2V6 3.49127
77 4ORM FMN 3.49127
78 4ORM ORO 3.49127
79 1JS4 BGC BGC 3.49127
80 1JS4 BGC 3.49127
81 1ZPD DPX 3.49127
82 1CZR FMN 3.5503
83 1Z83 AP5 3.57143
84 1L3I SAH 3.64583
85 3EHH ADP 3.66972
86 5FBN 5WF 3.69004
87 1D6S PLP MET 3.72671
88 1COY AND 3.74065
89 1COY FAD 3.74065
90 4XJ7 ADN 3.74532
91 3A06 FOM 3.98936
92 1T7Q 152 3.99003
93 1T7Q COA 3.99003
94 6F7L FAD 3.99003
95 6APL C5P 4.01069
96 3GGU 017 4.0404
97 2POC BG6 4.08719
98 4CQM NAP 4.21456
99 2J8Z NAP 4.23729
100 4S28 AIR 4.2394
101 4S28 SAH 4.2394
102 6D6Y SAH 4.2394
103 3MGB PAP 4.38871
104 4WAS NAP 4.3956
105 5H68 AGS 4.41176
106 1O5I NAD 4.41767
107 4D0G GTP 4.57143
108 1FDJ 2FP 4.6832
109 1FDJ 13P 4.6832
110 2NSJ C2R 4.73373
111 2WPF WPF 4.73815
112 2WPF FAD 4.73815
113 1MO9 FAD 4.73815
114 1MO9 KPC 4.73815
115 5GVL PLG 4.73815
116 5GVL GI8 4.73815
117 1B7H LYS NLE LYS 4.73815
118 1RL4 BRR 4.78723
119 4I54 1C1 4.81586
120 4JBI NDP 4.86486
121 4B52 RDF 4.93421
122 2O4N TPV 5.05051
123 4YHQ G10 5.05051
124 6G96 ACO 5.11364
125 2C7G ODP 5.23691
126 2C7G FAD 5.23691
127 3Q9L ATP 5.38462
128 3TN7 NJP 5.44747
129 4AUT FAD 5.48628
130 3FB4 AP5 5.55556
131 6EXF LYS 5.64516
132 3U4L ATP 5.71429
133 2X1L ADN 5.73566
134 3RI1 3RH 5.7508
135 5EIB GTP 5.91716
136 5EYP GDP 5.91716
137 3IHG FAD 5.98504
138 2FXD DR7 6.06061
139 2AZC 3TL 6.06061
140 1J09 GLU 6.23441
141 2AKO ADP 6.3745
142 4LY9 S6P 6.48379
143 4HWS 1B3 6.48379
144 3ITJ FAD 6.50888
145 6EXO C3E 6.51163
146 1E3W NAD 6.51341
147 2BKX F6R 6.61157
148 3VC3 C6P 6.68605
149 5VEG FMN 6.74157
150 4AT0 FAD 6.98254
151 5G5G FAD 6.9869
152 5LU5 M7P 7.1066
153 5BO9 CSF 7.12074
154 3KCC CMP 7.30769
155 3IQE F42 7.42049
156 6CE2 SVR 7.43802
157 5XFV FMN 7.48503
158 4M52 M52 7.73067
159 5Y6Q FAD 7.73067
160 4N82 FMN 7.73067
161 2F5Z FAD 7.8125
162 3CLH NAD 7.87172
163 3FV1 DYH 8.98438
164 3SM2 478 9.09091
165 2HF9 GSP 9.29204
166 3V2U ATP 9.47631
167 1MHW BP4 CYS DAR TYR PEA 9.52381
168 3I8P 840 9.60187
169 1ELI PYC 9.76864
170 2HK9 NAP 9.81818
171 1IDA 0PO 10.101
172 2P3C 3TL 10.101
173 2BTO GTP 10.1852
174 1N62 MCN 10.2244
175 3ZS9 ADP ALF 10.5263
176 1QAW TRP 10.8108
177 2CJF RP4 10.828
178 4YV5 SVR 11.4754
179 1BVY FMN 12.0419
180 2P3B 3TL 12.1212
181 2QV6 GTP 12.3134
182 1VE3 SAM 12.7753
183 5U5N NAD 12.9032
184 5ODQ 9SB 12.9676
185 1AG9 FMN 13.1429
186 5AEW BNL 14.3617
187 5LJI FMN 16.2162
188 4RHE FMN 16.2679
189 4X8O AP5 16.3551
190 1B1C FMN 17.1271
191 3CIP ATP 17.1875
192 4RJK TPP 17.207
193 1YAG ATP 17.6
194 1USF NAP 17.9775
195 1SIV PSI 18.1818
196 4HEQ FMN 21.9178
Pocket No.: 2; Query (leader) PDB : 4UP4; Ligand: NDG; Similar sites found with APoc: 196
This union binding pocket(no: 2) in the query (biounit: 4up4.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 6GAQ FMN 1.2987
2 2ZJ3 G6P 1.33333
3 1MOQ GLP 1.3587
4 2C0U FAD NBT 1.49626
5 1U1I NAD 1.53061
6 3ZQ6 ADP ALF 1.54321
7 4B1W ATP 1.59574
8 2FXU ATP 1.6
9 3MN7 ATP 1.60428
10 3MN6 ATP 1.60428
11 6B0K 9RN G4S 9RN G4S 1.74564
12 6B0K G4S 9RN G4S 9RN G4S 1.74564
13 4EDF UPG 1.74564
14 4A2A ATP 1.74564
15 2BEK ATP 1.94553
16 3B4Y F42 1.96629
17 4QYS PLR 1.99501
18 3FC4 EDO 1.99501
19 2QA1 FAD 1.99501
20 3FJO FMN 1.99501
21 3A1I UNU 1.99501
22 4CZG ADP 2.01149
23 4CZG QH3 2.01149
24 2YYY NAP 2.04082
25 1JQI FAD 2.06186
26 2RHW C0E 2.12014
27 5TUK FAD 2.24439
28 4ZY1 4U5 2.24439
29 3VYW SAM 2.27273
30 3PFD FDA 2.29008
31 4GID 0GH 2.31959
32 1U9Q 186 2.32558
33 4C3Y FAD 2.49377
34 4C3Y ANB 2.49377
35 3NRR NAP 2.49377
36 3NRR D16 2.49377
37 5MPT SAH 2.49377
38 3WCZ CIT 2.5974
39 5E72 SAM 2.60116
40 4DR9 BB2 2.60417
41 2O07 MTA 2.63158
42 2O07 SPD 2.63158
43 3B1J NAD 2.65487
44 3FCI 3FI 2.69058
45 1G60 SAM 2.69231
46 1RHC F42 ACN 2.72727
47 4EU7 CIT 2.74314
48 4EU7 COA 2.74314
49 4ZLU ADP 2.74314
50 4ZLU 4PW 2.74314
51 5JWC FAD 2.74314
52 3AYI HCI 2.74314
53 2Z6J FMN 2.74314
54 2WC1 FMN 2.74725
55 5GJO PLP 2.79188
56 1DQS NAD 2.79898
57 5EOB 5QQ 2.82132
58 2JAH NDP 2.83401
59 1Q7B NAP 2.86885
60 3C3N FMN 2.88462
61 1OVD ORO 2.89389
62 1OVD FMN 2.89389
63 4JNE ATP 2.99252
64 1X92 M7P 3.01508
65 2A14 SAH 3.04183
66 1RX0 FAD 3.05344
67 3UWV 2PG 3.06513
68 1EZ4 NAD 3.14465
69 4D5G FAD 3.2419
70 4D5G TPP 3.2419
71 4LZJ 22H 3.30033
72 2V2V V12 3.32103
73 6GAS FAD 3.32326
74 3RK1 ATP 3.37553
75 5N0J FAD 3.4188
76 4ORM 2V6 3.49127
77 4ORM FMN 3.49127
78 4ORM ORO 3.49127
79 1JS4 BGC BGC 3.49127
80 1JS4 BGC 3.49127
81 1ZPD DPX 3.49127
82 1CZR FMN 3.5503
83 1Z83 AP5 3.57143
84 1L3I SAH 3.64583
85 3EHH ADP 3.66972
86 5FBN 5WF 3.69004
87 1D6S PLP MET 3.72671
88 1COY AND 3.74065
89 1COY FAD 3.74065
90 4XJ7 ADN 3.74532
91 3A06 FOM 3.98936
92 1T7Q 152 3.99003
93 1T7Q COA 3.99003
94 6F7L FAD 3.99003
95 6APL C5P 4.01069
96 3GGU 017 4.0404
97 2POC BG6 4.08719
98 4CQM NAP 4.21456
99 2J8Z NAP 4.23729
100 4S28 AIR 4.2394
101 4S28 SAH 4.2394
102 6D6Y SAH 4.2394
103 3MGB PAP 4.38871
104 4WAS NAP 4.3956
105 5H68 AGS 4.41176
106 1O5I NAD 4.41767
107 4D0G GTP 4.57143
108 1FDJ 2FP 4.6832
109 1FDJ 13P 4.6832
110 2NSJ C2R 4.73373
111 2WPF WPF 4.73815
112 2WPF FAD 4.73815
113 1MO9 FAD 4.73815
114 1MO9 KPC 4.73815
115 5GVL PLG 4.73815
116 5GVL GI8 4.73815
117 1B7H LYS NLE LYS 4.73815
118 1RL4 BRR 4.78723
119 4I54 1C1 4.81586
120 4JBI NDP 4.86486
121 4B52 RDF 4.93421
122 2O4N TPV 5.05051
123 4YHQ G10 5.05051
124 6G96 ACO 5.11364
125 2C7G ODP 5.23691
126 2C7G FAD 5.23691
127 3Q9L ATP 5.38462
128 3TN7 NJP 5.44747
129 4AUT FAD 5.48628
130 3FB4 AP5 5.55556
131 6EXF LYS 5.64516
132 3U4L ATP 5.71429
133 2X1L ADN 5.73566
134 3RI1 3RH 5.7508
135 5EIB GTP 5.91716
136 5EYP GDP 5.91716
137 3IHG FAD 5.98504
138 2FXD DR7 6.06061
139 2AZC 3TL 6.06061
140 1J09 GLU 6.23441
141 2AKO ADP 6.3745
142 4LY9 S6P 6.48379
143 4HWS 1B3 6.48379
144 3ITJ FAD 6.50888
145 6EXO C3E 6.51163
146 1E3W NAD 6.51341
147 2BKX F6R 6.61157
148 3VC3 C6P 6.68605
149 5VEG FMN 6.74157
150 4AT0 FAD 6.98254
151 5G5G FAD 6.9869
152 5LU5 M7P 7.1066
153 5BO9 CSF 7.12074
154 3KCC CMP 7.30769
155 3IQE F42 7.42049
156 6CE2 SVR 7.43802
157 5XFV FMN 7.48503
158 4M52 M52 7.73067
159 5Y6Q FAD 7.73067
160 4N82 FMN 7.73067
161 2F5Z FAD 7.8125
162 3CLH NAD 7.87172
163 3FV1 DYH 8.98438
164 3SM2 478 9.09091
165 2HF9 GSP 9.29204
166 3V2U ATP 9.47631
167 1MHW BP4 CYS DAR TYR PEA 9.52381
168 3I8P 840 9.60187
169 1ELI PYC 9.76864
170 2HK9 NAP 9.81818
171 1IDA 0PO 10.101
172 2P3C 3TL 10.101
173 2BTO GTP 10.1852
174 1N62 MCN 10.2244
175 3ZS9 ADP ALF 10.5263
176 1QAW TRP 10.8108
177 2CJF RP4 10.828
178 4YV5 SVR 11.4754
179 1BVY FMN 12.0419
180 2P3B 3TL 12.1212
181 2QV6 GTP 12.3134
182 1VE3 SAM 12.7753
183 5U5N NAD 12.9032
184 5ODQ 9SB 12.9676
185 1AG9 FMN 13.1429
186 5AEW BNL 14.3617
187 5LJI FMN 16.2162
188 4RHE FMN 16.2679
189 4X8O AP5 16.3551
190 1B1C FMN 17.1271
191 3CIP ATP 17.1875
192 4RJK TPP 17.207
193 1YAG ATP 17.6
194 1USF NAP 17.9775
195 1SIV PSI 18.1818
196 4HEQ FMN 21.9178
Pocket No.: 3; Query (leader) PDB : 4UP4; Ligand: GAL NAG; Similar sites found with APoc: 159
This union binding pocket(no: 3) in the query (biounit: 4up4.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 3WB0 FEG None
2 1ZEI CRS None
3 1CT9 AMP 1.49626
4 2C0U FAD NBT 1.49626
5 5Z75 NAD 1.52905
6 3ZQ6 ADP ALF 1.54321
7 5A7V MAN 1.54639
8 1SQK ADP 1.59151
9 2RGH FAD 1.74564
10 2VBA P4T 1.74564
11 4CJX NAP 1.88088
12 5W0N 2KH 1.99501
13 4QYS PLR 1.99501
14 4EIL NDP 1.99501
15 4CZG ADP 2.01149
16 4CZG QH3 2.01149
17 5G4L NDP 2.0979
18 3A4V NAD 2.2082
19 3A4V PYR 2.2082
20 2VAR KDF 2.23642
21 2TPL HPP 2.24439
22 2IYF UDP 2.24439
23 2ZC0 PMP 2.24439
24 3AHQ FAD 2.24439
25 3VYW SAM 2.27273
26 1JQ3 AAT 2.36486
27 2IU8 UD1 2.40642
28 2IU8 PLM 2.40642
29 2PT9 2MH 2.49221
30 2CXS F6P 2.49377
31 3MKH FAD 2.49377
32 2VL8 UDP 2.49377
33 2VL8 CTS 2.49377
34 5W7I GLY VAL VAL ALA SER GLN PRO ALA ARG VAL 2.51046
35 2H04 4UN 2.55591
36 2QZX IVA VAL VAL STA ALA STA 2.63158
37 2O07 MTA 2.63158
38 2O07 SPD 2.63158
39 3B1J NAD 2.65487
40 5DOZ NDP 2.66272
41 3FCI 3FI 2.69058
42 1RO7 CSF 2.7027
43 2X61 NGA GAL SIA 2.71318
44 2X61 CH 2.71318
45 2FWP CIT 2.73224
46 5O0J 8BR 2.74314
47 4ONC 40B 2.8169
48 1XKQ NDP 2.85714
49 2OYS FMN 2.89256
50 4UIB GWX 2.9316
51 6MVU K4V 2.99252
52 1KOJ PAN 2.99252
53 2WOE AR6 3.01003
54 5HC0 NPO 3.0137
55 1Z3C SA8 3.02013
56 1VHT BA3 3.21101
57 3PF7 MLA 3.2419
58 1G6O ADP 3.33333
59 4IY7 0JO 3.52645
60 1BGQ RDC 3.55556
61 4JWX 1N4 3.57143
62 5FBN 5WF 3.69004
63 1PS9 FMN 3.74065
64 2JFV FLC 3.78007
65 5C03 AGS 3.80117
66 1GR0 NAD 3.81471
67 5UBG PRT 3.9823
68 2PO3 T4K 3.99003
69 1Q19 APC 3.99003
70 6APL C5P 4.01069
71 3F6R FMN 4.05405
72 5J60 FAD 4.0625
73 5AG3 3EB 4.11765
74 5K5Z ANP 4.14013
75 2WOJ ADP ALF 4.23729
76 2J8Z NAP 4.23729
77 1CZA G6P 4.2394
78 3EYA TDP 4.2394
79 1XCL SAH 4.25532
80 2Q89 6CS 4.28016
81 1I9G SAM 4.28571
82 1UJ2 ADP 4.36508
83 1UJ2 C5P 4.36508
84 1NJF AGS 4.4
85 3D1R FBP 4.45104
86 4MOB COA 4.51807
87 4XDA ADP 4.53074
88 6CUZ FEV 4.63918
89 2IHT TPP 4.73815
90 1UPA TPP 4.73815
91 4ZNL BEF ADP 4.74453
92 4NBU NAI 4.8
93 4I54 1C1 4.81586
94 2JGV ADP 4.84848
95 2VBF TPP 4.98753
96 1PJS SAH 4.98753
97 1P1C SAH 5.02513
98 1EP2 ORO 5.36398
99 1V47 ADX 5.44413
100 5K0A FAD 5.45455
101 3GXA MET 5.45455
102 5UQK U2F 5.73566
103 5N5D SAM 5.75221
104 3O5X JZG 5.7971
105 5T9F TYR 5.90406
106 5T9F NAP 5.90406
107 4BE9 7P9 5.98504
108 3IR1 MET 6.12245
109 2GAG FAD 6.23441
110 2GAG FOA 6.23441
111 5C2N NAG 6.25
112 3OND ADN 6.48379
113 4YMH SAH 6.66667
114 3VC3 C6P 6.68605
115 4WZA ADP 6.73317
116 4WZA ACP 6.73317
117 5DM1 5D7 6.74157
118 5DM1 SAH 6.74157
119 1RM6 FAD 6.8323
120 4C5N PXL 6.88406
121 4C5N ACP 6.88406
122 5TG5 JW8 7.34694
123 3H0L ADP 7.44681
124 2BVL UDP 7.4813
125 2BVL GLC 7.4813
126 1W0J ADP BEF 7.72059
127 1W0J ADP 7.72059
128 5Y6Q FAD 7.73067
129 2CK3 ANP 8
130 2V7Q ADP 8
131 2V7Q ATP 8
132 2CK3 ADP 8
133 2ED4 FAD 8.05369
134 6DEF GCP 8.18414
135 4Y7U 2KH 8.22511
136 3FV1 DYH 8.98438
137 3SM2 478 9.09091
138 1ZEM NAD 9.16031
139 1T8U UAP SGN IDS SGN 9.19118
140 1T8U A3P 9.19118
141 2I6A 5I5 9.27536
142 3N8K D1X 9.30233
143 3ABI NAD 9.31507
144 1GA8 UPF 9.6463
145 1GA8 DEL 9.6463
146 1V1A ADP 9.70874
147 1V1A KDG 9.70874
148 3ZIA ADP 9.72569
149 5L95 AMP 10
150 1N62 FAD 10.2244
151 5U61 7WG 10.3806
152 2CJF RP4 10.828
153 1F06 NDP 11.5625
154 2ZTS ADP 12.3506
155 4XRZ SI6 12.9676
156 2O2C G6Q 13.217
157 3UKR CKH 13.245
158 4TTQ ATP 16.7442
159 3VRY B43 20.9476
Pocket No.: 4; Query (leader) PDB : 4UP4; Ligand: GAL NAG; Similar sites found with APoc: 159
This union binding pocket(no: 4) in the query (biounit: 4up4.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 2VCH UDP 1.24688
2 2ZJ3 G6P 1.33333
3 1MOQ GLP 1.3587
4 2VK4 TPP 1.49626
5 3KAL ADP 1.49626
6 2FXU ATP 1.6
7 3MN6 ATP 1.60428
8 5OWC AYZ 1.63934
9 3EBL GA4 1.64384
10 5EIN NAP 1.74419
11 6B0K G4S 9RN G4S 9RN G4S 1.74564
12 4A2A ATP 1.74564
13 1PFY MSP 1.74564
14 4KRG SAH 1.74564
15 4B2D FBP 1.74564
16 6G5J EM8 1.81818
17 1M7G ADP 1.89573
18 1M7G ADX 1.89573
19 4QYS PLP SEP 1.99501
20 5YS9 FAD 1.99501
21 2YYY NAP 2.04082
22 3C6K MTA 2.09974
23 3C6K SPD 2.09974
24 5GZ6 NDP 2.14724
25 5K4W THR 2.18069
26 2EUG URA 2.18341
27 3DNT ATP 2.24439
28 3SSO SAH 2.24439
29 5HM3 649 2.24439
30 4EA7 COA 2.27273
31 4EA7 JB2 2.27273
32 3LM9 ADP 2.31788
33 1U9Q 186 2.32558
34 1TU3 GNP 2.33918
35 1CF2 NAP 2.37389
36 4C3Y ANB 2.49377
37 1T9D FAD 2.49377
38 3BZ3 YAM 2.53623
39 1QZZ SAM 2.6738
40 4EU7 CIT 2.74314
41 4EU7 COA 2.74314
42 5GUD NDP 2.74314
43 5JWC FAD 2.74314
44 5GUD 2IT 2.74314
45 4ZLU 4PW 2.74314
46 2GKS ADP 2.74314
47 2IHK CSF 2.75689
48 1NJR XYL 2.8169
49 4IVN BMX 2.8777
50 3C3N FMN 2.88462
51 4M73 M72 2.96736
52 4M73 SAH 2.96736
53 1X92 M7P 3.01508
54 3CTL S6P 3.0303
55 1RX0 FAD 3.05344
56 6CI9 NAP 3.0888
57 2ZSH GA3 3.1339
58 4XXH T6P 3.13725
59 1FL2 FAD 3.22581
60 4LZJ 22H 3.30033
61 1JQD SAH 3.42466
62 1JS4 BGC BGC 3.49127
63 1JS4 BGC 3.49127
64 4ORM 2V6 3.49127
65 4ORM FMN 3.49127
66 4ORM ORO 3.49127
67 1ZPD DPX 3.49127
68 1OBV FMN 3.5503
69 1D6S MET PLP 3.72671
70 1D6S PLP MET 3.72671
71 5T8U LPA 3.88889
72 1TIQ COA 3.88889
73 3A06 FOM 3.98936
74 2NXW TPP 3.99003
75 6F7L FAD 3.99003
76 5XET ME8 3.99003
77 6IKG MET ALA ALA 3.99003
78 1T7Q 152 3.99003
79 1T7Q COA 3.99003
80 2POC BG6 4.08719
81 1XRO LEU 4.09556
82 1S8G DAO 4.13223
83 4CQM NAP 4.21456
84 3I53 SAH 4.21687
85 4KCT FDP 4.2394
86 4AMV F6R 4.2394
87 3OVR 5SP 4.38596
88 4WAS NAP 4.3956
89 3EEL 53T 4.40529
90 4ITR GDP 4.43038
91 4IO2 GLU 4.43548
92 5T2U NAP 4.43548
93 5XJ8 NKO 4.47761
94 1QPB TPP 4.48878
95 1QPB PYM 4.48878
96 1FDJ 2FP 4.6832
97 1FDJ 13P 4.6832
98 1Z08 GNP 4.70588
99 1G16 GDP 4.70588
100 2WPF WPF 4.73815
101 4OOE NDP 4.73815
102 4OOE FOM 4.73815
103 2VHJ ADP 4.83384
104 1TAD GDP 4.93827
105 1TAD ALF 4.93827
106 1ADO 13P 4.95868
107 1PJS NAD 4.98753
108 2R75 01G 5.02959
109 3AFN NAP 5.03876
110 4EXS X8Z 5.14706
111 4V3C C 5.15464
112 1AOE GW3 5.20833
113 1AOE NDP 5.20833
114 5EXE 5SR 5.31646
115 1UDH URA 5.32787
116 3UIE ANP 5.5
117 3U4L ATP 5.71429
118 2X1L ADN 5.73566
119 3RI1 3RH 5.7508
120 4DXD 9PC 5.98504
121 1UMG 2FP 6.35359
122 3FSM 2NC 6.89655
123 3KA2 2NC 6.89655
124 4AT0 FAD 6.98254
125 1Y63 ADP 7.06522
126 5LU5 M7P 7.1066
127 5BO9 SIA GAL NGS 7.12074
128 5BO9 CSF 7.12074
129 1IHU ADP 7.23192
130 1IHU AF3 7.23192
131 1GPM CIT 7.4813
132 5XFV FMN 7.48503
133 3PNL ADP 7.58294
134 4M52 M52 7.73067
135 3EPO MP5 7.73067
136 4MO4 ACP 7.81671
137 6AM8 PLT 7.82828
138 3CLH NAD 7.87172
139 1IK4 PGH 7.89474
140 3AD8 FAD 8.08081
141 3AD8 PYC 8.08081
142 2FLI DX5 8.18182
143 1MI3 NAD 8.38509
144 5M3E APR 8.48485
145 4CBU ATP 8.66142
146 2W9S NDP 9.31677
147 4A1O JLN 9.47631
148 5CMK GLU 10.0386
149 5DXV NAP 10.8974
150 1F06 2NP 11.5625
151 5OVL NAP 12
152 1BVY FMN 12.0419
153 3NWQ 2NC 12.1212
154 3BF1 PAU 14.0562
155 4ITU NAI 16.3569
156 4RJK TPP 17.207
157 1USF NAP 17.9775
158 3GWZ SAH 20.3252
159 4HEQ FMN 21.9178
Pocket No.: 5; Query (leader) PDB : 4UP4; Ligand: GAL NAG; Similar sites found with APoc: 102
This union binding pocket(no: 5) in the query (biounit: 4up4.bio2) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 3OEN GLU 1.3986
2 3FV3 IVA VAL VAL STA ALA STA 1.47493
3 3D9F FAD 1.49626
4 3D9F N6C 1.49626
5 1I7M CG 1.49813
6 1XL8 OCB 1.74564
7 5YAK FMN 1.89394
8 3FC4 EDO 1.99501
9 4LC1 GDP 2.07715
10 3H4L ANP 2.17984
11 2VAR KDG 2.23642
12 3RFV NAI 2.62172
13 1RF6 GPJ 2.99252
14 1RF6 S3P 2.99252
15 5WPJ NDP 2.99252
16 1JS3 PLP 142 2.99252
17 2D1K ATP 3.07692
18 5DVP POA 3.14286
19 1EZ4 NAD 3.14465
20 5KKA 6V0 3.20513
21 3W6C NAG NAG 3.27869
22 6GAS FAD 3.32326
23 5D9O BGC BGC BGC BGC 3.39943
24 4J7U NAP 3.47222
25 4J7U YTZ 3.47222
26 3A28 NAD 3.48837
27 1WG8 SAM 3.50877
28 1GRN AF3 3.66492
29 1N07 FMN 3.68098
30 1N07 ADP 3.68098
31 1ORR NAD 3.7464
32 5YU3 NAD 3.77907
33 5YU3 PRO 3.77907
34 4QJK COA 3.82979
35 3TUR 6CL 3.83275
36 3TUR DGL 3.83275
37 1ZBQ NAD 3.97554
38 1XHL NDP 4.0404
39 6CQF F97 4.0404
40 1GZ6 NAI 4.07523
41 4NKT 2KH 4.10557
42 1N9G NAP 4.14508
43 2Q0L FAD 4.18006
44 4OI4 ATP 4.34783
45 2I3G NAP 4.54545
46 1VHD NAP 4.58221
47 2RCA GLY 4.79452
48 1QNF HDF 4.98753
49 1V59 FAD 4.98753
50 2ZJ1 NAD 5.23691
51 2ZJ1 ARJ 5.23691
52 2WM4 VGJ 5.23691
53 3T34 GDP 5.27778
54 2QXL ATP 5.48628
55 7CPA FVF 5.53746
56 3ZKK XYP XYP XYP XYP 5.73566
57 1Y3A GDP 5.77508
58 3I9L N1C 5.81395
59 2H6T IVA VAL VAL STA ALA STA 5.88235
60 3RLF ANP 6.03675
61 1Z3V LAT 6.23441
62 1IYK MIM 6.37755
63 3OND NAD 6.48379
64 5CGE 51F 6.4982
65 1H2B NAJ 6.68524
66 1S9D GDP 6.70732
67 5M67 ADE 6.73317
68 5M67 NAD 6.73317
69 5M67 3D1 6.73317
70 5G5G MCN 6.9869
71 1XFF GLU 7.08333
72 5N9Z CAP 7.19424
73 4EHU ANP 7.6087
74 3VU2 CEX 7.73067
75 3M31 FAD 7.73196
76 6AMI TRP 7.82828
77 6C4A PYR 7.98005
78 1WDD CAP 8.59375
79 1QF9 C5P 8.76289
80 1QF9 ADP 8.76289
81 1QF9 ALF 8.76289
82 1WM1 PTB 9.14826
83 5L0S UDP 9.52381
84 1FFU CDP 10.1045
85 2BTO GTP 10.1852
86 1N62 MCN 10.2244
87 1UZH CAP 10.6557
88 1DJN FMN 10.7232
89 2RC8 DSN 12.585
90 1IGW PYR 12.7182
91 1UZD CAP 13.4328
92 1T3Q MCN 14.2857
93 6HT0 GQ8 15.4839
94 1IR2 CAP 17.1429
95 4MN7 SME 18.1208
96 2V67 CAP 19.2857
97 2V63 CAP 19.2857
98 2VDH CAP 19.2857
99 1GK8 CAP 19.2857
100 2V6A CAP 19.2857
101 2V68 CAP 19.2857
102 5OYA CAP 20.1439
Pocket No.: 6; Query (leader) PDB : 4UP4; Ligand: GAL NAG; Similar sites found with APoc: 67
This union binding pocket(no: 6) in the query (biounit: 4up4.bio2) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 1SZ2 BGC 1.20482
2 5LRT ADP 1.24688
3 4C6F DOR 1.27226
4 4C6F NCD 1.27226
5 5V2J 7WV 1.49626
6 5V2J UDP 1.49626
7 2DPY ADP 1.49626
8 5OCS FMN 1.88679
9 5L2M 6ZY 1.99501
10 5GZ6 7C3 2.14724
11 5OVX AY5 2.29508
12 1S7G NAD 2.37154
13 2WQQ CSF 2.4055
14 3NW7 LGV 2.60586
15 4QOS ADP 2.64151
16 1JJV ATP 2.91262
17 4XYM COA 3.04348
18 1A2C 34H LEU PRJ OAR 3.0888
19 4Y9J FAD 3.49127
20 4QLX KTC 3.65297
21 4QLX FMN 3.65297
22 1R89 CTP 3.74065
23 3TKA SAM 3.7464
24 5LOG SAH 3.86266
25 3OII