Receptor
PDB id Resolution Class Description Source Keywords
4U54 2.41 Å NON-ENZYME: TRANSPORT IMPORTIN-ALPHA MINOR NLS SITE INHIBITOR MUS MUSCULUS TPX2 INHIBITOR TRANSPORT PROTEIN
Ref.: SELECTIVE TARGETING OF THE TPX2 SITE OF IMPORTIN-AL FRAGMENT-BASED LIGAND DESIGN. CHEMMEDCHEM V. 10 1232 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
3C5 A:501;
 Valid;
 none;
 Kd = 8.7 mM
198.264 C13 H14 N2 CNCc1...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1Y2A 2.2 Å NON-ENZYME: TRANSPORT STRUCTURE OF MAMMALIAN IMPORTIN BOUND TO THE NON-CLASSICAL PLSCR1-NLS MUS MUSCULUS ARMADILLO REPEAT; PROTEIN:PEPTIDE COMPLEX; SUPERHELIX OF HELICES PROTEIN TRANSPORT
Ref.: PHOSPHOLIPID SCRAMBLASE 1 CONTAINS A NONCLASSICAL NUCLEAR LOCALIZATION SIGNAL WITH UNIQUE BINDING SITE IN IMPORTIN ALPHA J.BIOL.CHEM. V. 280 10599 2005
Members (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 232 families.
1 4U54 Kd = 8.7 mM 3C5 C13 H14 N2 CNCc1cccc(....
2 4U5U Kd = 1.3 mM 3D2 C18 H24 N4 O c1cc(cc(c1....
3 4U5V Kd = 0.9 mM RH2 C16 H22 N4 O S c1cc(cnc1)....
4 4U5N Kd = 3.3 mM 3D4 C33 H45 N7 O5 C[C@H]([C@....
5 4U5O Kd = 3.8 mM 3D5 C18 H24 N4 O c1cc(cnc1)....
6 1Y2A Kd ~ 45.8 nM GLY LYS ILE SER LYS HIS TRP THR GLY ILE n/a n/a
7 4U5S Kd = 3.9 mM 3D0 C30 H45 N7 O6 C[C@@H]([C....
70% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 197 families.
1 4U54 Kd = 8.7 mM 3C5 C13 H14 N2 CNCc1cccc(....
2 4U5U Kd = 1.3 mM 3D2 C18 H24 N4 O c1cc(cc(c1....
3 4U5V Kd = 0.9 mM RH2 C16 H22 N4 O S c1cc(cnc1)....
4 4U5N Kd = 3.3 mM 3D4 C33 H45 N7 O5 C[C@H]([C@....
5 4U5O Kd = 3.8 mM 3D5 C18 H24 N4 O c1cc(cnc1)....
6 1Y2A Kd ~ 45.8 nM GLY LYS ILE SER LYS HIS TRP THR GLY ILE n/a n/a
7 4U5S Kd = 3.9 mM 3D0 C30 H45 N7 O6 C[C@@H]([C....
8 6D7M - SIN C4 H6 O4 C(CC(=O)O)....
9 3OQS - VAL LYS VAL VAL ALA LYS LYS TYR ARG ASN n/a n/a
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 165 families.
1 4RXH Kd = 1.23 uM PRO PRO LYS LYS LYS ARG LYS VAL n/a n/a
2 1EE4 - PRO ALA ALA LYS ARG VAL LYS LEU ASP n/a n/a
3 4U54 Kd = 8.7 mM 3C5 C13 H14 N2 CNCc1cccc(....
4 4U5U Kd = 1.3 mM 3D2 C18 H24 N4 O c1cc(cc(c1....
5 4U5V Kd = 0.9 mM RH2 C16 H22 N4 O S c1cc(cnc1)....
6 4U5N Kd = 3.3 mM 3D4 C33 H45 N7 O5 C[C@H]([C@....
7 4U5O Kd = 3.8 mM 3D5 C18 H24 N4 O c1cc(cnc1)....
8 1Y2A Kd ~ 45.8 nM GLY LYS ILE SER LYS HIS TRP THR GLY ILE n/a n/a
9 4U5S Kd = 3.9 mM 3D0 C30 H45 N7 O6 C[C@@H]([C....
10 6D7M - SIN C4 H6 O4 C(CC(=O)O)....
11 3OQS - VAL LYS VAL VAL ALA LYS LYS TYR ARG ASN n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: 3C5; Similar ligands found: 4
No: Ligand ECFP6 Tc MDL keys Tc
1 3C5 1 1
2 D2G 0.431034 0.69697
3 60L 0.428571 0.655172
4 W79 0.418919 0.615385
Similar Ligands (3D)
Ligand no: 1; Ligand: 3C5; Similar ligands found: 359
No: Ligand Similarity coefficient
1 D1G 0.9539
2 LEL 0.9493
3 V2Z 0.9479
4 795 0.9479
5 0LO 0.9462
6 X6P 0.9457
7 X6W 0.9448
8 6NZ 0.9439
9 0NX 0.9437
10 5F8 0.9427
11 MMJ 0.9420
12 AVA 0.9408
13 LNN 0.9395
14 AED 0.9391
15 WVV 0.9370
16 D3G 0.9369
17 AUV 0.9368
18 5FL 0.9366
19 Q4G 0.9340
20 F63 0.9339
21 VM1 0.9336
22 B2T 0.9334
23 A9B 0.9330
24 0K7 0.9310
25 YE6 0.9309
26 28B 0.9309
27 8CC 0.9297
28 U7E 0.9290
29 L5D 0.9288
30 M4N 0.9286
31 UN3 0.9281
32 A7Q 0.9275
33 IQQ 0.9256
34 49P 0.9256
35 4FF 0.9249
36 7KE 0.9248
37 5C1 0.9245
38 NK5 0.9245
39 S1D 0.9240
40 JSX 0.9240
41 XI7 0.9240
42 1ER 0.9235
43 R20 0.9232
44 KWH 0.9227
45 XDK 0.9226
46 VBC 0.9226
47 5F5 0.9218
48 HKK 0.9213
49 5TZ 0.9205
50 L1T 0.9204
51 K4T 0.9191
52 28A 0.9185
53 3GV 0.9180
54 BZE 0.9167
55 KWB 0.9165
56 HQJ 0.9165
57 FCD 0.9163
58 LFQ 0.9161
59 L5V 0.9155
60 78Y 0.9150
61 7G2 0.9144
62 L22 0.9142
63 HHB 0.9127
64 492 0.9125
65 3VQ 0.9118
66 AZY 0.9107
67 II4 0.9105
68 ZZA 0.9100
69 6MW 0.9098
70 RKV 0.9097
71 RPN 0.9095
72 27K 0.9090
73 BQ5 0.9089
74 6TZ 0.9085
75 M3E 0.9077
76 2GE 0.9076
77 TR4 0.9076
78 2GD 0.9075
79 KCH 0.9075
80 G14 0.9073
81 36Z 0.9068
82 IWT 0.9061
83 LL1 0.9043
84 L03 0.9042
85 MIL 0.9041
86 SSY 0.9040
87 4G2 0.9032
88 36M 0.9030
89 BP7 0.9027
90 TCR 0.9025
91 9XZ 0.9022
92 WUB 0.9021
93 EWG 0.9019
94 3DE 0.9018
95 ONR 0.9018
96 5NR 0.9012
97 RA7 0.9010
98 SOV 0.9008
99 JI2 0.9003
100 7O4 0.9002
101 KW8 0.8998
102 P4L 0.8998
103 HH6 0.8994
104 5UH 0.8991
105 7R4 0.8989
106 0F9 0.8987
107 X48 0.8980
108 5P3 0.8974
109 GNV 0.8972
110 PUE 0.8970
111 RVE 0.8970
112 EYJ 0.8969
113 DXK 0.8967
114 5E5 0.8964
115 EV2 0.8964
116 BVS 0.8962
117 JF5 0.8955
118 6C5 0.8954
119 BPY 0.8949
120 A5H 0.8947
121 JMG 0.8945
122 1ZC 0.8945
123 92G 0.8945
124 D8Q 0.8945
125 1SF 0.8944
126 AJG 0.8940
127 4V2 0.8939
128 LRW 0.8932
129 J1K 0.8931
130 GNY 0.8931
131 0UL 0.8931
132 U4J 0.8930
133 AQ1 0.8929
134 2D2 0.8928
135 GF4 0.8925
136 NIR 0.8924
137 3CX 0.8921
138 4AU 0.8921
139 363 0.8921
140 GOE 0.8920
141 MKN 0.8918
142 5V5 0.8918
143 D25 0.8916
144 TT4 0.8916
145 1FE 0.8912
146 QKU 0.8912
147 LJ3 0.8911
148 F40 0.8911
149 5B2 0.8908
150 X11 0.8907
151 SNJ 0.8899
152 CK1 0.8898
153 L15 0.8896
154 5V6 0.8894
155 JCZ 0.8893
156 RCV 0.8891
157 XEV 0.8890
158 BZM 0.8884
159 3D8 0.8881
160 EQA 0.8881
161 GZ2 0.8881
162 S7S 0.8879
163 6C9 0.8879
164 G30 0.8879
165 15Q 0.8876
166 YTX 0.8873
167 YZ9 0.8871
168 1A7 0.8871
169 2GQ 0.8869
170 7VP 0.8867
171 833 0.8866
172 ODK 0.8863
173 2LW 0.8863
174 NIF 0.8859
175 QR2 0.8857
176 1AJ 0.8854
177 6DQ 0.8853
178 1XS 0.8849
179 B4O 0.8848
180 S46 0.8847
181 EQW 0.8843
182 90G 0.8841
183 OKM 0.8840
184 JTA 0.8840
185 0OY 0.8836
186 9UL 0.8835
187 69W 0.8834
188 BSA 0.8834
189 ZME 0.8833
190 90M 0.8830
191 HX4 0.8830
192 P93 0.8828
193 TJM 0.8828
194 4XF 0.8828
195 5KN 0.8825
196 FZ0 0.8823
197 8RK 0.8822
198 549 0.8821
199 P7V 0.8820
200 CUT 0.8819
201 M83 0.8817
202 EZL 0.8815
203 P80 0.8813
204 CH9 0.8810
205 VXX 0.8810
206 CK2 0.8809
207 KYN 0.8808
208 3RP 0.8805
209 0W1 0.8803
210 9CE 0.8803
211 JWS 0.8802
212 M1Z 0.8800
213 N7I 0.8798
214 RAY 0.8796
215 SOJ 0.8795
216 L98 0.8793
217 1FL 0.8786
218 HL6 0.8784
219 463 0.8781
220 6C4 0.8775
221 D1Y 0.8774
222 6C8 0.8773
223 4GU 0.8772
224 5TO 0.8769
225 0MB 0.8768
226 2UD 0.8767
227 DDC 0.8767
228 692 0.8765
229 FER 0.8764
230 IQ5 0.8762
231 C82 0.8760
232 6J9 0.8756
233 BQ2 0.8756
234 PIQ 0.8755
235 TIA 0.8754
236 BGU 0.8753
237 UKV 0.8751
238 HJH 0.8751
239 3XH 0.8751
240 C4E 0.8749
241 M5H 0.8749
242 GJK 0.8748
243 TXW 0.8747
244 ET0 0.8747
245 Y3L 0.8744
246 47V 0.8743
247 HRM 0.8741
248 SU9 0.8740
249 OJD 0.8739
250 7L4 0.8739
251 BZQ 0.8737
252 MS0 0.8737
253 AJ1 0.8736
254 0SY 0.8734
255 TRP 0.8731
256 6L6 0.8731
257 Q8G 0.8727
258 0XR 0.8727
259 2J2 0.8726
260 DY8 0.8720
261 G6Q 0.8720
262 E9S 0.8718
263 BNL 0.8716
264 3Y7 0.8715
265 4I8 0.8711
266 8NX 0.8710
267 TU0 0.8708
268 4Z9 0.8705
269 K6N 0.8705
270 DBE 0.8702
271 JVD 0.8702
272 9JT 0.8700
273 CKA 0.8697
274 FMQ 0.8696
275 27M 0.8695
276 WLH 0.8691
277 C0H 0.8690
278 2F6 0.8689
279 I2E 0.8689
280 6FG 0.8688
281 N4E 0.8688
282 N3W 0.8687
283 9FH 0.8685
284 AJD 0.8684
285 KLE 0.8682
286 3CA 0.8682
287 NFZ 0.8680
288 Q8D 0.8677
289 A73 0.8673
290 AH3 0.8672
291 GXD 0.8671
292 77X 0.8670
293 ZRK 0.8669
294 GUS 0.8668
295 3F4 0.8667
296 H4E 0.8666
297 RGK 0.8664
298 MXD 0.8664
299 WDW 0.8657
300 3VW 0.8656
301 ENO 0.8655
302 IOP 0.8654
303 SZ5 0.8653
304 25F 0.8651
305 LDC 0.8646
306 1AE 0.8644
307 F1X 0.8644
308 LLT 0.8644
309 LR2 0.8643
310 272 0.8641
311 0RY 0.8640
312 5GT 0.8639
313 CIY 0.8637
314 7ZL 0.8637
315 PZX 0.8635
316 ENG 0.8634
317 KM2 0.8631
318 DFL 0.8631
319 3SU 0.8630
320 BXZ 0.8627
321 4F8 0.8623
322 WOE 0.8621
323 MVH 0.8619
324 AH6 0.8617
325 0FS 0.8615
326 3ZB 0.8612
327 428 0.8611
328 C0W 0.8611
329 XDE 0.8608
330 ALE 0.8608
331 A8K 0.8605
332 20D 0.8604
333 NKI 0.8603
334 CX4 0.8602
335 F6P 0.8601
336 IPO 0.8599
337 MD6 0.8598
338 8D6 0.8596
339 JGY 0.8594
340 VGS 0.8593
341 7MW 0.8592
342 FX5 0.8592
343 W29 0.8590
344 PA5 0.8583
345 S0J 0.8582
346 CUQ 0.8577
347 ERZ 0.8570
348 B21 0.8567
349 R9G 0.8566
350 LZ5 0.8559
351 GXG 0.8557
352 KPV 0.8548
353 VFG 0.8543
354 DTR 0.8541
355 JAA 0.8533
356 P9I 0.8531
357 JRB 0.8531
358 ALA ZGL 0.8525
359 AWE 0.8525
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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