-->
Receptor
PDB id Resolution Class Description Source Keywords
4TVD 2.3 Å EC: 2.4.1.5 N-TERMINALLY TRUNCATED DEXTRANSUCRASE DSR-E FROM LEUCONOSTOC MESENTEROIDES NRRL B-1299 IN COMPLEX WITH D-GLUCOSE LEUCONOSTOC MESENTEROIDES SUBSP. MESENORGANISM_TAXID: 33967 ALPHA-1 2-BRANCHING-SUCRASE GLUCAN-BINDING DOMAIN GLUCANSD-GLUCOSE TRANSFERASE
Ref.: STRUCTURAL INSIGHTS INTO THE CARBOHYDRATE BINDING A AN ALPHA-(12) BRANCHING SUCRASE FROM GLYCOSIDE HYDR FAMILY 70. J.BIOL.CHEM. V. 291 7527 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BGC A:2907;
A:2909;
A:2902;
A:2908;
A:2905;
A:2911;
A:2906;
A:2910;
A:2904;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
180.156 C6 H12 O6 C([C@...
PEG A:2912;
Invalid;
none;
submit data
106.12 C4 H10 O3 C(COC...
CA A:2901;
Part of Protein;
none;
submit data
40.078 Ca [Ca+2...
GLC A:2903;
Valid;
none;
submit data
180.156 C6 H12 O6 C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4TVD 2.3 Å EC: 2.4.1.5 N-TERMINALLY TRUNCATED DEXTRANSUCRASE DSR-E FROM LEUCONOSTOC MESENTEROIDES NRRL B-1299 IN COMPLEX WITH D-GLUCOSE LEUCONOSTOC MESENTEROIDES SUBSP. MESENORGANISM_TAXID: 33967 ALPHA-1 2-BRANCHING-SUCRASE GLUCAN-BINDING DOMAIN GLUCANSD-GLUCOSE TRANSFERASE
Ref.: STRUCTURAL INSIGHTS INTO THE CARBOHYDRATE BINDING A AN ALPHA-(12) BRANCHING SUCRASE FROM GLYCOSIDE HYDR FAMILY 70. J.BIOL.CHEM. V. 291 7527 2016
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 4TVD - GLC C6 H12 O6 C([C@@H]1[....
2 4TTU - GLC GLC n/a n/a
3 4TVC - GLC GLC GLC n/a n/a
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 4TVD - GLC C6 H12 O6 C([C@@H]1[....
2 4TTU - GLC GLC n/a n/a
3 4TVC - GLC GLC GLC n/a n/a
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4TVD - GLC C6 H12 O6 C([C@@H]1[....
2 4TTU - GLC GLC n/a n/a
3 4TVC - GLC GLC GLC n/a n/a
4 3HZ3 - SUC C12 H22 O11 C([C@@H]1[....
5 3KLL - MAL C12 H22 O11 C([C@@H]1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BGC; Similar ligands found: 142
No: Ligand ECFP6 Tc MDL keys Tc
1 WOO 1 1
2 GLC 1 1
3 BGC 1 1
4 ALL 1 1
5 BMA 1 1
6 GXL 1 1
7 GIV 1 1
8 GAL 1 1
9 MAN 1 1
10 GLA 1 1
11 Z6J 0.653846 0.866667
12 32O 0.653846 0.866667
13 RIB 0.653846 0.866667
14 FUB 0.653846 0.866667
15 AHR 0.653846 0.866667
16 MLB 0.511628 0.848485
17 GLC GLC 0.511628 0.848485
18 BGC GLC 0.511628 0.848485
19 BGC GLA 0.511628 0.848485
20 GLA BMA 0.511628 0.848485
21 MAN BMA 0.511628 0.848485
22 BMA GLA 0.511628 0.848485
23 GLA BGC 0.511628 0.848485
24 MAN MAN 0.511628 0.848485
25 GLA GLC 0.511628 0.848485
26 BMA MAN 0.511628 0.848485
27 GAL GLC 0.511628 0.848485
28 GAL GAL 0.511628 0.848485
29 LAK 0.511628 0.848485
30 GLC BGC 0.511628 0.848485
31 YDR 0.5 0.8
32 GLC GLC GLC GLC BGC 0.488889 0.848485
33 GLC GLC GLC 0.488889 0.848485
34 MAN MAN MAN 0.488889 0.848485
35 BMA MAN MAN 0.488889 0.848485
36 GLC GLC GLC GLC GLC BGC 0.488889 0.848485
37 EMZ 0.472222 0.794118
38 BG6 0.461538 0.675
39 BGP 0.461538 0.675
40 G6P 0.461538 0.675
41 M6P 0.461538 0.675
42 M6D 0.461538 0.675
43 A6P 0.461538 0.675
44 GAF 0.457143 0.875
45 SHG 0.457143 0.875
46 2FG 0.457143 0.875
47 G2F 0.457143 0.875
48 2H5 0.457143 0.875
49 GCS 0.457143 0.777778
50 1GN 0.457143 0.777778
51 X6X 0.457143 0.777778
52 PA1 0.457143 0.777778
53 95Z 0.457143 0.777778
54 G3F 0.457143 0.875
55 NGR 0.454545 0.848485
56 MAL 0.454545 0.848485
57 MAN GLC 0.454545 0.848485
58 GAL BGC 0.454545 0.848485
59 GLA GLA 0.454545 0.848485
60 BGC BMA 0.454545 0.848485
61 M3M 0.454545 0.848485
62 GLA GAL 0.454545 0.848485
63 MAB 0.454545 0.848485
64 GLC GAL 0.454545 0.848485
65 B2G 0.454545 0.848485
66 LBT 0.454545 0.848485
67 BMA GAL 0.454545 0.848485
68 LAT 0.454545 0.848485
69 BGC GAL 0.454545 0.848485
70 CBI 0.454545 0.848485
71 CBK 0.454545 0.848485
72 N9S 0.454545 0.848485
73 LB2 0.454545 0.848485
74 3MG 0.444444 0.875
75 TCB 0.444444 0.8
76 GLC SGC 0.444444 0.8
77 YIO 0.441176 0.870968
78 2GS 0.432432 0.875
79 2M4 0.431818 0.848485
80 AHR AHR 0.428571 0.764706
81 GLF 0.428571 0.84375
82 FUB AHR 0.428571 0.764706
83 MAN BMA BMA 0.416667 0.848485
84 BMA MAN BMA 0.416667 0.848485
85 CTR 0.416667 0.848485
86 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.416667 0.848485
87 GLA GAL BGC 0.416667 0.848485
88 CE5 0.416667 0.848485
89 MLR 0.416667 0.848485
90 CE6 0.416667 0.848485
91 MT7 0.416667 0.848485
92 BMA BMA BMA 0.416667 0.848485
93 GLC BGC BGC BGC BGC 0.416667 0.848485
94 MAN MAN BMA BMA BMA BMA 0.416667 0.848485
95 BGC BGC BGC BGC BGC 0.416667 0.848485
96 BGC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
97 BGC GLC GLC 0.416667 0.848485
98 BMA BMA BMA BMA BMA 0.416667 0.848485
99 MAN BMA BMA BMA BMA 0.416667 0.848485
100 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
101 GLC BGC BGC BGC BGC BGC 0.416667 0.848485
102 MAN BMA BMA BMA BMA BMA 0.416667 0.848485
103 BGC BGC BGC BGC BGC BGC 0.416667 0.848485
104 BGC GLC GLC GLC 0.416667 0.848485
105 BGC BGC BGC GLC 0.416667 0.848485
106 CTT 0.416667 0.848485
107 GLA GAL GLC 0.416667 0.848485
108 MTT 0.416667 0.848485
109 GLC BGC BGC BGC 0.416667 0.848485
110 GLC GLC BGC 0.416667 0.848485
111 CEY 0.416667 0.848485
112 B4G 0.416667 0.848485
113 CE8 0.416667 0.848485
114 BMA BMA BMA BMA BMA BMA 0.416667 0.848485
115 GAL FUC 0.416667 0.848485
116 DXI 0.416667 0.848485
117 GLC BGC GLC 0.416667 0.848485
118 CT3 0.416667 0.848485
119 GAL GAL GAL 0.416667 0.848485
120 GLC GLC GLC GLC GLC 0.416667 0.848485
121 BGC BGC BGC BGC 0.416667 0.848485
122 BGC BGC BGC 0.416667 0.848485
123 BGC BGC GLC 0.416667 0.848485
124 CEX 0.416667 0.848485
125 GLC GAL GAL 0.416667 0.848485
126 BGC GLC GLC GLC GLC 0.416667 0.848485
127 GLC BGC BGC 0.416667 0.848485
128 GS1 GLC GS1 0.408163 0.8
129 SGC SGC BGC 0.408163 0.8
130 BGC BGC BGC GLC BGC BGC 0.408163 0.848485
131 GLC BGC BGC BGC BGC BGC BGC 0.408163 0.848485
132 1LL 0.405405 0.771429
133 TDG 0.405405 0.771429
134 TRE 0.405405 0.848485
135 NDG 0.404762 0.7
136 NGA 0.404762 0.7
137 NAG 0.404762 0.7
138 HSQ 0.404762 0.7
139 A2G 0.404762 0.7
140 BM3 0.404762 0.7
141 FUB AHR AHR 0.4 0.764706
142 AHR AHR AHR AHR AHR AHR 0.4 0.764706
Ligand no: 2; Ligand: GLC; Similar ligands found: 142
No: Ligand ECFP6 Tc MDL keys Tc
1 WOO 1 1
2 GLC 1 1
3 BGC 1 1
4 ALL 1 1
5 BMA 1 1
6 GXL 1 1
7 GIV 1 1
8 GAL 1 1
9 MAN 1 1
10 GLA 1 1
11 Z6J 0.653846 0.866667
12 32O 0.653846 0.866667
13 RIB 0.653846 0.866667
14 FUB 0.653846 0.866667
15 AHR 0.653846 0.866667
16 MLB 0.511628 0.848485
17 GLC GLC 0.511628 0.848485
18 BGC GLC 0.511628 0.848485
19 BGC GLA 0.511628 0.848485
20 GLA BMA 0.511628 0.848485
21 MAN BMA 0.511628 0.848485
22 BMA GLA 0.511628 0.848485
23 GLA BGC 0.511628 0.848485
24 MAN MAN 0.511628 0.848485
25 GLA GLC 0.511628 0.848485
26 BMA MAN 0.511628 0.848485
27 GAL GLC 0.511628 0.848485
28 GAL GAL 0.511628 0.848485
29 LAK 0.511628 0.848485
30 GLC BGC 0.511628 0.848485
31 YDR 0.5 0.8
32 GLC GLC GLC GLC BGC 0.488889 0.848485
33 GLC GLC GLC 0.488889 0.848485
34 MAN MAN MAN 0.488889 0.848485
35 BMA MAN MAN 0.488889 0.848485
36 GLC GLC GLC GLC GLC BGC 0.488889 0.848485
37 EMZ 0.472222 0.794118
38 BG6 0.461538 0.675
39 BGP 0.461538 0.675
40 G6P 0.461538 0.675
41 M6P 0.461538 0.675
42 M6D 0.461538 0.675
43 A6P 0.461538 0.675
44 GAF 0.457143 0.875
45 SHG 0.457143 0.875
46 2FG 0.457143 0.875
47 G2F 0.457143 0.875
48 2H5 0.457143 0.875
49 GCS 0.457143 0.777778
50 1GN 0.457143 0.777778
51 X6X 0.457143 0.777778
52 PA1 0.457143 0.777778
53 95Z 0.457143 0.777778
54 G3F 0.457143 0.875
55 NGR 0.454545 0.848485
56 MAL 0.454545 0.848485
57 MAN GLC 0.454545 0.848485
58 GAL BGC 0.454545 0.848485
59 GLA GLA 0.454545 0.848485
60 BGC BMA 0.454545 0.848485
61 M3M 0.454545 0.848485
62 GLA GAL 0.454545 0.848485
63 MAB 0.454545 0.848485
64 GLC GAL 0.454545 0.848485
65 B2G 0.454545 0.848485
66 LBT 0.454545 0.848485
67 BMA GAL 0.454545 0.848485
68 LAT 0.454545 0.848485
69 BGC GAL 0.454545 0.848485
70 CBI 0.454545 0.848485
71 CBK 0.454545 0.848485
72 N9S 0.454545 0.848485
73 LB2 0.454545 0.848485
74 3MG 0.444444 0.875
75 TCB 0.444444 0.8
76 GLC SGC 0.444444 0.8
77 YIO 0.441176 0.870968
78 2GS 0.432432 0.875
79 2M4 0.431818 0.848485
80 AHR AHR 0.428571 0.764706
81 GLF 0.428571 0.84375
82 FUB AHR 0.428571 0.764706
83 MAN BMA BMA 0.416667 0.848485
84 BMA MAN BMA 0.416667 0.848485
85 CTR 0.416667 0.848485
86 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.416667 0.848485
87 GLA GAL BGC 0.416667 0.848485
88 CE5 0.416667 0.848485
89 MLR 0.416667 0.848485
90 CE6 0.416667 0.848485
91 MT7 0.416667 0.848485
92 BMA BMA BMA 0.416667 0.848485
93 GLC BGC BGC BGC BGC 0.416667 0.848485
94 MAN MAN BMA BMA BMA BMA 0.416667 0.848485
95 BGC BGC BGC BGC BGC 0.416667 0.848485
96 BGC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
97 BGC GLC GLC 0.416667 0.848485
98 BMA BMA BMA BMA BMA 0.416667 0.848485
99 MAN BMA BMA BMA BMA 0.416667 0.848485
100 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
101 GLC BGC BGC BGC BGC BGC 0.416667 0.848485
102 MAN BMA BMA BMA BMA BMA 0.416667 0.848485
103 BGC BGC BGC BGC BGC BGC 0.416667 0.848485
104 BGC GLC GLC GLC 0.416667 0.848485
105 BGC BGC BGC GLC 0.416667 0.848485
106 CTT 0.416667 0.848485
107 GLA GAL GLC 0.416667 0.848485
108 MTT 0.416667 0.848485
109 GLC BGC BGC BGC 0.416667 0.848485
110 GLC GLC BGC 0.416667 0.848485
111 CEY 0.416667 0.848485
112 B4G 0.416667 0.848485
113 CE8 0.416667 0.848485
114 BMA BMA BMA BMA BMA BMA 0.416667 0.848485
115 GAL FUC 0.416667 0.848485
116 DXI 0.416667 0.848485
117 GLC BGC GLC 0.416667 0.848485
118 CT3 0.416667 0.848485
119 GAL GAL GAL 0.416667 0.848485
120 GLC GLC GLC GLC GLC 0.416667 0.848485
121 BGC BGC BGC BGC 0.416667 0.848485
122 BGC BGC BGC 0.416667 0.848485
123 BGC BGC GLC 0.416667 0.848485
124 CEX 0.416667 0.848485
125 GLC GAL GAL 0.416667 0.848485
126 BGC GLC GLC GLC GLC 0.416667 0.848485
127 GLC BGC BGC 0.416667 0.848485
128 GS1 GLC GS1 0.408163 0.8
129 SGC SGC BGC 0.408163 0.8
130 BGC BGC BGC GLC BGC BGC 0.408163 0.848485
131 GLC BGC BGC BGC BGC BGC BGC 0.408163 0.848485
132 1LL 0.405405 0.771429
133 TDG 0.405405 0.771429
134 TRE 0.405405 0.848485
135 NDG 0.404762 0.7
136 NGA 0.404762 0.7
137 NAG 0.404762 0.7
138 HSQ 0.404762 0.7
139 A2G 0.404762 0.7
140 BM3 0.404762 0.7
141 FUB AHR AHR 0.4 0.764706
142 AHR AHR AHR AHR AHR AHR 0.4 0.764706
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4TVD; Ligand: BGC; Similar sites found with APoc: 41
This union binding pocket(no: 1) in the query (biounit: 4tvd.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 1Q3Q ANP 1.45985
2 3ZX4 2M8 1.5444
3 5KMS FAD 1.89531
4 3LST SAH 2.01149
5 1GPE FAD 2.04429
6 2WQN ADP 2.25806
7 5JCA FAD 2.53165
8 1F8G NAD 2.60417
9 3SXN COA 2.60664
10 1XKV ATP 2.6465
11 4QYS PLP SEP 2.71493
12 5ABH YWN 2.89256
13 2QV6 GTP 2.98507
14 1XDS SAM 3.20856
15 3WXM GTP 3.57942
16 1UKW FAD 3.69393
17 1GEG NAD 3.90625
18 1UKQ GLC ACI G6D GLC 3.93586
19 5MZY 8EZ 4.03226
20 4U9U FAD 4.98221
21 5VN0 NAI 5.21236
22 5VN0 FAD 5.21236
23 3VMF GTP 5.36193
24 2XKO AKG 5.40541
25 1PNO NAP 5.55556
26 1JGT CMA 5.65302
27 1JGT APC 5.65302
28 1JT1 MCO 5.70342
29 1U00 GLU LEU PRO PRO VAL LYS ILE HIS CYS 5.72687
30 5W5R PYR 5.74163
31 3ORQ ADP 5.83554
32 1CSI OAA 6.43678
33 1CSI CMX 6.43678
34 6H1U ASP 6.96864
35 5FUW THM 8.24176
36 3BC9 G6D GLC ACI GLD GLC ACI GLD GLC BGC 8.34725
37 4B7X NAP 9.22619
38 3HL4 CDC 9.32203
39 2GQS C2R 11.3924
40 6COJ F8G 11.8577
41 5YFT RI2 12.963
Pocket No.: 2; Query (leader) PDB : 4TVD; Ligand: BGC; Similar sites found with APoc: 95
This union binding pocket(no: 2) in the query (biounit: 4tvd.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 5A57 5G0 GAL 1.07431
2 1UH4 GLC GLC GLC 1.0989
3 3BMW GLC GLC G6D ACI GLC GLC GLC 1.1713
4 1VB9 GLC GLC GLC GLC GLC GLC 1.7094
5 6BS6 GLC GLC GLC GLC 1.79104
6 6BS6 GLC GLC GLC GLC GLC GLC GLC 1.79104
7 2GDV BGC 1.98413
8 3CZG GLC 2.01863
9 1O98 2PG 2.15264
10 2CXG GLC G6D ACI GLC 2.18659
11 4U31 MVP 2.19619
12 2FHF GLC GLC GLC GLC 2.21607
13 5CPS GLC GLC GLC GLC GLC GLC GLC GLC 2.48227
14 5CPS GLC GLC GLC GLC GLC GLC GLC GLC GLC 2.48227
15 1ZOA 140 2.537
16 3L4S 3PG 2.67857
17 5CMK GLU 2.7027
18 5CGM MAL 2.72206
19 6AMI TRP 2.77778
20 3CIF G3H 2.78552
21 5WZN A2G 2.96875
22 3AXI GLC 3.05603
23 1NP7 FAD 3.06748
24 1UA7 ACI GLD GLC ACI G6D BGC 3.08057
25 1DJN FMN 3.15501
26 1S7G NAD 3.16206
27 3CMC NAD 3.29341
28 2AE2 NAP 3.46154
29 2AE2 PTO 3.46154
30 2B4R AES 3.47826
31 2B4R NAD 3.47826
32 5IH9 6BF 3.58209
33 3EDF ACX 3.66057
34 3EDF CE6 3.66057
35 2R5T ANP 4.02145
36 5DQ8 FLF 4.16667
37 5BRP PNG 4.22535
38 1M0W ANP 4.27699
39 4IY7 KOU 4.28212
40 4JLZ UTP 4.37158
41 3QP4 HL0 4.3956
42 1K3T BRZ 4.73538
43 1PK8 ATP 4.73934
44 1ESW ACR 4.8
45 3VM7 GLC 4.87805
46 1V08 NTZ 4.88281
47 6A0J GLC GLC GLC GLC 4.88323
48 8CGT TM6 4.97076
49 1JCM 137 5.01931
50 2J9C ATP 5.04202
51 4FG8 ATP 5.07937
52 1JG9 GLC 5.25478
53 1J0I GLC GLC GLC 5.27211
54 4S3R 7SA 5.31609
55 1IA9 ANP 5.35714
56 2BW7 ECS 5.47945
57 2PUL ACP 5.54156
58 3WY2 BGC 5.57621
59 3GBE NOJ 5.73477
60 3UER TUR 5.80153
61 3UER BTU 5.80153
62 2PWG CTS 5.93525
63 5DO8 BGC 5.94595
64 6AM8 PLT 6.06061
65 5WCZ NOJ 6.14334
66 4W93 3L9 6.25
67 3FV1 DYH 6.25
68 1HYH NAD 6.47249
69 1G94 DAF GLC DAF GLC GLC 6.47321
70 4NW6 2NS 6.50155
71 1LWJ ACG 6.57596
72 1TXR BES 6.68896
73 1JDC GLC GLC GLC GLC 6.75991
74 1HDG NAD 6.92771
75 5ZCE MTT 7.02703
76 2O7B HC4 7.67754
77 3SHZ 5CO 7.78098
78 4BG1 OGA 8.26873
79 4BG1 IVL 8.26873
80 4E2O ACI G6D GLC ACI G6D BGC 8.59031
81 2GJP BGC GLC DAF GLC GLC GLC DAF 8.65979
82 2D3N GLC GLC GLC GLC 8.86598
83 2D3N GLC GLC GLC GLC GLC GLC 8.86598
84 2D3N GLC 8.86598
85 2ZID GLC GLC GLC 9.2081
86 5A2B MAL 9.25553
87 4HPH SUC 9.66011
88 1PIG AGL GLC HMC AGL GLC BGC 10.4839
89 2OAZ I96 10.5691
90 1QHO ABD 10.6414
91 4RPO T6C 13.4529
92 5EJ2 NAD 15.2597
93 5XSS XYP 15.8228
94 1E3Z ACI GLD GLC ACI GLD GLC ACI GLD GLC GLC 23.6025
95 4A2A ATP 37.5
Pocket No.: 3; Query (leader) PDB : 4TVD; Ligand: BGC; Similar sites found with APoc: 33
This union binding pocket(no: 3) in the query (biounit: 4tvd.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 5GUD NDP 2.12314
2 2R42 FPS 2.27848
3 3C6K MTA 2.3622
4 3C6K SPD 2.3622
5 2A8X FAD 2.37069
6 5C8L GLC 2.74725
7 3GAY P6T 2.78638
8 6ENO BJ8 3.08789
9 4YOI 4F4 3.26797
10 2RCU BUJ 3.36907
11 5O1I 9GH 3.65297
12 4ONQ SFG 3.92157
13 4I4Z 2NE 4
14 5VW2 FDA 4.11392
15 5VW2 NAP 4.11392
16 4PAB THG 4.48792
17 4YLU R30 4.57516
18 4Q3S X7A 4.67532
19 1QFY NAP 4.87013
20 1QFY FAD 4.87013
21 2O07 SPD 5.92105
22 2O07 MTA 5.92105
23 5L9O GOP 5.97015
24 1HDC CBO 6.29921
25 5ZAI COA 6.56371
26 5VEG FMN 6.74157
27 1V3S ATP 6.89655
28 2CJF RP4 8.28025
29 2HJ4 PNZ 10.3704
30 6CEN ACE GLY VAL NLE ARG ILE NH2 12.7193
31 4ZRN UPG 14.1026
32 3Q9N COA 22.7848
33 2PN6 GLN 27.3333
Pocket No.: 4; Query (leader) PDB : 4TVD; Ligand: BGC; Similar sites found with APoc: 39
This union binding pocket(no: 4) in the query (biounit: 4tvd.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 1ZPD DPX 1.40845
2 3EJR HN4 1.43541
3 2X05 X05 1.64729
4 4LOC BTN 1.89873
5 3F3E LEU 1.92678
6 5A3T MMK 2.079
7 5TUX ECH 2.16718
8 4OKD GLC GLC GLC 2.2619
9 5WX3 COA 2.27273
10 5JE8 NAD 2.31788
11 6ER9 FAD 2.36794
12 1KY8 NAP 2.39521
13 3QYY C2E 2.39521
14 4PXZ 6AD 2.57511
15 5TIV A3P 2.7668
16 1WOR RED 3.02198
17 4Y30 SAH 3.1339
18 6ARJ BW4 3.15186
19 2DHC DCE 3.54839
20 1VGV UD1 3.64583
21 4J25 OGA 3.93013
22 5JNN 6LM 4.21053
23 5HGR 45D 4.30769
24 2B4Q NAP 4.34783
25 3ZJQ NCA 5.12821
26 3NB0 G6P 5.93103
27 1VYF OLA 6.66667
28 5UFC DR2 7.66129
29 4D42 NAP 7.80142
30 4D42 W0I 7.80142
31 5M3Z PY6 8.0402
32 5M3Z PLP 8.0402
33 3H0A 9RA 8.45588
34 4HIA FMN 9.09091
35 4IAE 1DX 11.6402
36 1PZ4 PLM 12.069
37 2ZYK GLC GLC GLC GLC GLC GLC GLC GLC 14.8615
38 3UKR CKH 17.8808
39 3KXC PLM 18.9873
Pocket No.: 5; Query (leader) PDB : 4TVD; Ligand: BGC; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 4tvd.bio1) has 3 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 4TVD; Ligand: BGC; Similar sites found with APoc: 60
This union binding pocket(no: 6) in the query (biounit: 4tvd.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 4AVB CMP 1.5015
2 3VRY B43 1.54185
3 1Q1R FAD 2.08817
4 4MUV PCG 2.11268
5 3IQE F42 2.12014
6 1EWF PC1 2.41228
7 5DCH 1YO 2.60417
8 5FEU NAP 2.74914
9 2JAJ D20 2.76817
10 1WOQ BGC 2.99625
11 6F97 FAD 3.01318
12 3VZS NAP 3.11284
13 3VZS CAA 3.11284
14 4FN4 NAD 3.14961
15 2P4S DIH 3.21716
16 3O0Q TTP 3.41615
17 5FFF NAP 3.50195
18 3TKY SAH 3.53261
19 4D9M 0JO 3.76884
20 5GT9 NAP 3.80228
21 3IU9 T07 3.81944
22 4YSX FAD 3.84615
23 4I42 1HA 3.85965
24 1TUU AMP 4.01003
25 1TUU PIS 4.01003
26 6FOG OXL 4.01786
27 6B0K G4S 9RN G4S 9RN G4S 4.21286
28 3KCC CMP 4.23077
29 1QK3 5GP 4.29185
30 4NVP 7CH 4.30622
31 3NUG NAD 4.45344
32 5DEX GLY 4.59364
33 3RLB VIB 4.6875
34 3EVF GTA 5.05415
35 3EVF SAH 5.05415
36 3EHG ATP 5.46875
37 5YZ2 AMP 5.55556
38 3P7I P7I 5.60748
39 4AT0 FAD 5.88235
40 1W0J ADP BEF 5.88235
41 5XNC MTA 5.92992
42 3KLJ FAD 6.23377
43 5C8W PCG 6.29371
44 1TD2 PXL 6.62021
45 6DWD GTP 6.72727
46 6DWD HDV 6.72727
47 4OFG PCG 6.94444
48 1MI3 NAD 7.14286
49 1SUW NAP 8.03213
50 4L1F FAD 8.094
51 3KIH GDL 9.27835
52 2IOY RIP 10.6007
53 5KJZ PCG 11.3333
54 3OCP CMP 11.5108
55 6CI9 NAP 11.583
56 1G2O IMH 13.0597
57 4KU7 PCG 13.0719
58 5JAX 6J7 14.8148
59 3RUV ANP 15.2855
60 5T2Z 017 18.1818
Pocket No.: 7; Query (leader) PDB : 4TVD; Ligand: GLC; Similar sites found with APoc: 9
This union binding pocket(no: 7) in the query (biounit: 4tvd.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 3LIH RAF 1.26183
2 3BL7 DD1 1.99336
3 3SFX FII 3.4384
4 3SFX JAN 3.4384
5 2WW5 CHT 5.98291
6 1EOM NAG MAN MAN MAN NAG GAL NAG GAL 7.24138
7 5BV3 M7G 8.4058
8 2R2L PB9 10.4762
9 2V05 CHT 21.865
Pocket No.: 8; Query (leader) PDB : 4TVD; Ligand: BGC; Similar sites found with APoc: 169
This union binding pocket(no: 8) in the query (biounit: 4tvd.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 1ZK7 FAD 1.71306
2 6GAS FAD 1.81269
3 1PFY MSP 1.81488
4 1KEW TYD 1.93906
5 1KEW NAD 1.93906
6 3ZZH NLG 1.9544
7 1GET NAP 2
8 1GET FAD 2
9 3HF3 FMN 2.00573
10 1BZL FAD 2.05761
11 5FJN FAD 2.19298
12 5FJN BE2 2.19298
13 5ZBC FAD 2.21729
14 2WPF FAD 2.22222
15 2HSA FMN 2.23881
16 5L9G MO0 2.2792
17 5I0H ADP BEF 2.2942
18 2FV5 541 2.29885
19 4W6Z 8ID 2.30548
20 2G30 ALA ALA PHE 2.32558
21 2GN4 UD1 2.32558
22 4M52 FAD 2.36052
23 3DJF BC3 2.43902
24 1I8T FAD 2.45232
25 4J1Q NDP 2.58621
26 1ORR NAD 2.59366
27 4MOP 2H5 2.68562
28 3GD4 FAD 2.73973
29 4ZG4 VO4 ADP 2.74869
30 2R4J 13P 2.79441
31 2R4J FAD 2.79441
32 3SSO SAH 2.86396
33 1WMA AB3 2.89855
34 1WMA NDP 2.89855
35 6EOZ AKG 2.92208
36 6EOZ 58K 2.92208
37 6AA8 NAD 2.98013
38 3T7S SAM 2.98507
39 4UBT COA 3.00752
40 2Q7V FAD 3.07692
41 5BYK OAQ 3.0888
42 5BYK A3P 3.0888
43 3LAD FAD 3.15126
44 1DJN ADP 3.15501
45 4YRY FAD 3.20513
46 1O5I NAD 3.21285
47 1GQ2 NAP 3.24324
48 2GOU FMN 3.28767
49 1VYP TNF 3.2967
50 1VP5 NAP 3.3557
51 5XET ME8 3.40265
52 4JIQ 1L5 3.44828
53 4JIQ FMN 3.44828
54 3SJU NDP 3.58423
55 3GF4 FAD 3.58974
56 3GF4 UPG 3.58974
57 2H8Z FMN 3.62117
58 2H8Z 8CM 3.62117
59 1PI5 SM2 3.63128
60 3GEG NAD 3.64372
61 3AFH GSU 3.68852
62 1PJS NAD 3.71991
63 2HQM FAD 3.75783
64 2V0C LEU LMS 3.75854
65 2UUU PL3 3.76712
66 2UUU FAD 3.76712
67 5YSS NAD 3.90625
68 1VBJ NAP 3.91459
69 1LVL FAD 3.93013
70 3AAQ ARU 3.96601
71 5WO4 B7V 3.97351
72 2NVA PL2 4.03226
73 4J75 TYM 4.15648
74 3H4V DVP 4.16667
75 3H4V NAP 4.16667
76 2IVD FAD 4.1841
77 1FL2 FAD 4.19355
78 4OH4 ANP 4.2042
79 1DUB CAA 4.21456
80 1VPE ANP 4.27136
81 2RAB NAD 4.31965
82 2RAB FAD 4.31965
83 3NK7 SAM 4.33213
84 3QJ4 FAD 4.38596
85 3HRD FAD 4.39189
86 3C88 ARG ARG GLY CYS NH2 4.39815
87 4TMC HBA 4.4665
88 5A7Y SAH 4.48718
89 4RDI ATP 4.51389
90 3DMH SAM 4.72441
91 1T90 NAD 4.73251
92 4GUT FAD 4.83871
93 4NAE 1GP 4.88889
94 2J9D ADP 5.04202
95 4ZCC FAD 5.05952
96 4ZCC NAI 5.05952
97 4D79 ATP 5.07246
98 2PEL LBT 5.08475
99 1R6T TYM 5.24109
100 3HDY GDU 5.28967
101 3HDY FDA 5.28967
102 3HDY FAD 5.28967
103 4RT1 C2E 5.35714
104 1N62 FAD 5.42169
105 5G3U FDA 5.43735
106 5G3U ITW 5.43735
107 5AHW CMP 5.44218
108 2BW7 APC 5.47945
109 5OCM NAP 5.49828
110 3GBR PRP 5.50725
111 1ICP FMN 5.58511
112 1O94 ADP 5.625
113 3WHB DCC 5.6701
114 1OYB FMN 5.75
115 5YU3 NAD 5.81395
116 5YU3 PRO 5.81395
117 3X0V FAD 5.91497
118 1Z41 FMN 5.91716
119 1Z44 FMN 5.91716
120 1Z48 FMN 5.91716
121 5DYO FLU 6.13208
122 2BYS LOB 6.1674
123 4C3Y FAD 6.22642
124 1M2K APR 6.4257
125 1K97 ASP 6.81319
126 1K97 CIR 6.81319
127 5C5T AKG 7.01754
128 4JEM C5P 7.05882
129 4GID 0GH 7.2165
130 5ZQS BXP 7.39372
131 5HZ5 65X 7.46269
132 1Z0S ATP 7.55396
133 5UIJ TYD 7.65432
134 3IE3 GSH 7.6555
135 3IE3 N11 7.6555
136 2F6U CIT 7.69231
137 5AYV NAP 7.76699
138 5UCD NAP 7.87746
139 4J56 FAD 7.89474
140 6E2B PT7 7.89474
141 4TXI FAD 8.29268
142 3B7G ANP 8.69565
143 6B2M COA 8.74126
144 1O9J NAD 8.78244
145 2BME GNP 9.13978
146 3KFL ME8 9.21986
147 4NP3 2L2 9.33333
148 1YKF NAP 9.65909
149 3AFN NAP 10.0775
150 3AD8 NAD 10.101
151 3KRU FMN 10.2041
152 5O3Q CMP 10.8333
153 3LF0 ATP 11.4035
154 2F5Z FAD 11.8143
155 5GWT NAD 11.8705
156 1OC2 TDX 12.069
157 1OC2 NAD 12.069
158 5J1S ATP 13.0081
159 2H29 DND 13.2275
160 5EXT ADP 13.8462
161 4XCZ T3Q 13.9089
162 3KYF 5GP 5GP 15.5844
163 1B7T ADP 16.6667
164 1KK8 BEF ADP 16.8831
165 2W83 GTP 16.8831
166 2GAG FAD 17.1717
167 2GAG FOA 17.1717
168 2VB6 ADP BEF 22.8188
169 3RNM FAD 24.1379
Pocket No.: 9; Query (leader) PDB : 4TVD; Ligand: BGC; Similar sites found with APoc: 128
This union binding pocket(no: 9) in the query (biounit: 4tvd.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 4FL3 ANP 1.10236
2 2XVD AS6 1.3245
3 1H82 FAD 1.48305
4 1H82 GZZ 1.48305
5 4L9I 8PR 1.5873
6 1XJD STU 1.73913
7 4IZY 1J2 1.89702
8 5JGA 6KC 1.90476
9 4IDT T28 1.96629
10 5USZ SKE 2.07612
11 1CF2 NAP 2.07715
12 5XVR TRH 2.08333
13 2YAK OSV 2.10526
14 4E5N NAD 2.12121
15 6CMJ F6J 2.18069
16 4OUC 5ID 2.2409
17 3ORK AGS 2.2508
18 3EB9 FLC 2.25564
19 4WB6 ATP 2.28571
20 3ZBQ GDP 2.4024
21 1U59 STU 2.43902
22 3UIM ANP 2.45399
23 4CNK FAD 2.55754
24 5JFS 6K0 2.5974
25 4UX9 ANP 2.74725
26 5UIU 8CG 2.78638
27 1BYG STU 2.8777
28 4YZC STU 2.96296
29 4BFM ANP 2.99401
30 9LDT NAD 3.01205
31 4K33 ACP 3.07692
32 4WOV 3SM 3.15457
33 2X2M X2M 3.18471
34 5ZEC NAP 3.21637
35 1Q8Y ADP 3.21716
36 3KN5 ANP 3.38462
37 2WU6 DKI 3.41207
38 5JFL NAD 3.43511
39 3KJS NAP 3.45489
40 4JR7 GNP 3.47594
41 1LK7 DER 3.49345
42 3RUU 37G 3.49345
43 5DMZ ADP 3.56164
44 4EWH T77 3.63636
45 4NST ADP 3.73134
46 5DH3 5BS 3.80952
47 3E8N VRA 3.81232
48 3E8N ATP 3.81232
49 5DBX ANP 3.96341
50 5LP1 71H 4.12371
51 2RIO ADP 4.14747
52 5JM8 ATP 4.16667
53 2IVD ACJ 4.1841
54 1IR3 ANP 4.24837
55 3BU5 ATP 4.24837
56 5VAD PRO 4.26357
57 2ZJ3 G6P 4.26667
58 3SLS ANP 4.27632
59 3WSG CIT 4.36508
60 3GNI ATP 4.37018
61 5VM6 9EG 4.37956
62 3KYG 5GP 5GP 4.40529
63 1DFO FFO 4.55635
64 1CX4 CMP 4.59016
65 1GUZ NAD 4.83871
66 5CEO 50D 5
67 5M06 ADP 5.07246
68 5L8L ADP 5.12821
69 1V0O INR 5.20833
70 5L3S GNP 5.36913
71 1VDC FAD 5.40541
72 3SRV S19 5.41516
73 2VZ6 FEF 5.43131
74 4P5Z Q7M 5.54017
75 1ZQ9 SAM 5.61404
76 1PHK ATP 5.7047
77 5LVP ATP 5.78778
78 3NKS ACJ 5.87002
79 1HPG BOC ALA ALA PRO GLU 5.88235
80 4AMV F6R 5.91133
81 6C7Y ADP 5.98291
82 3TTI KBI 6.03448
83 5W4W 9WG 6.34441
84 4KBA 1QM 6.34441
85 4XMF HSM 6.52174
86 4H3P ANP 6.62983
87 2YAB AMP 6.6482
88 5FBN 5WF 7.01107
89 4BTI 7R9 7.29167
90 1K3A ACP 7.69231
91 5C4L SIS 7.78816
92 2Q1W NAD 7.80781
93 5LI1 ANP 7.9096
94 2QTR NXX 7.93651
95 4E93 GUI 7.95756
96 6G33 5ID 7.9646
97 4L1F COS 8.094
98 3PVW QRX 8.10811
99 2P4Y C03 8.30325
100 5A6N U7E 8.48057
101 2B99 RDL 8.97436
102 1U5R ATP 9.48276
103 3SXS PP2 9.70149
104 4BCM T7Z 9.92366
105 5EYP GDP 9.97783
106 5EYP GTP 9.97783
107 4LNU GTP 9.97783
108 4QTB 38Z 10
109 5LMK 6ZK 10.0775
110 4RHE FMN 10.5263
111 2XBP ATP 10.6195
112 3PFD FDA 10.9415
113 4LRJ ANP 11.2426
114 6GU6 1QK 11.9048
115 1YZX GSF 12.3894
116 3RYC GTP 12.5874
117 5LXT GTP 12.5874
118 4UAL 3FV 12.6492
119 5ITZ GTP 13.1783
120 5ITZ GDP 13.1783
121 5NWD 9C8 14.2857
122 1WB4 SXX 14.4781
123 6E2O S0L 16.6102
124 4C2V YJA 18.1818
125 4C2W ANP 21.1538
126 5DEY 59T 22.5589
127 5G1X ADP 23.8095
128 5EIB GTP 30.4348
Pocket No.: 10; Query (leader) PDB : 4TVD; Ligand: BGC; Similar sites found with APoc: 124
This union binding pocket(no: 10) in the query (biounit: 4tvd.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 6FK3 PPI 1.30597
2 4I3V NAD 1.63934
3 3N3T C2E 1.70068
4 3QKT ANP 1.76991
5 6C1S EFV 1.85376
6 2QE0 NAP 1.89474
7 1W5T ADP 1.94175
8 6BOX SAH 1.9802
9 5OLZ T4E 2.07373
10 1D8C SOR 2.07469
11 3T34 GDP 2.22222
12 4KX8 L2O VAL VAL ASP 2.36486
13 4B0T ADP 2.43408
14 2F6D ACR 2.43902
15 1N0U SO1 2.49406
16 3JQQ FAD 2.53165
17 2Z5Y HRM 2.53411
18 1YB5 NAP 2.5641
19 2HK5 1BM 2.59259
20 5UBG PRT 2.65487
21 2BVL GLC 2.76243
22 2BVL UDP 2.76243
23 5IUW IAC 2.8169
24 5IUW NAD 2.8169
25 5KD6 6C7 3.10263
26 5KD6 LBU 3.10263
27 5EP2 AZU 3.125
28 3SMA ACO 3.14685
29 2Z49 AMG 3.24074
30 5KOR GAL XYS XYS BGC BGC BGC XYS GAL BGC 3.26296
31 1M5W DXP 3.29218
32 2ED4 FAD 3.3557
33 5Z75 NAD 3.36391
34 5LAU AR6 3.36538
35 5Z69 AGS 3.49462
36 1NJJ GET 3.52941
37 5ZW3 SAH 3.55556
38 1PS9 FAD 3.57675
39 1RPN NDP 3.58209
40 2X6T ADP BMA 3.64146
41 2CFD R4A 3.71517
42 5Z20 NAI 3.76812
43 2PI8 NAG NAG NAG NAG NAG NAG 3.76812
44 2ZXG S23 3.7931
45 5M77 7K2 7K3 3.90492
46 2PID YSA 3.93258
47 2WZG UPG 4
48 1VQW FAD 4.15755
49 4DPL NAP 4.17827
50 1EQ2 ADQ 4.19355
51 3KEE 30B 4.21053
52 5ZI7 GLU 4.34311
53 5MTE BB2 4.37956
54 1T36 ADP 4.45026
55 2XCF BBQ 4.54545
56 2ZWI C5P 4.55764
57 5H4S RAM 4.57746
58 1F2U ATP 4.69799
59 1LDN NAD 4.74684
60 2CWH NDP 4.95627
61 2ZTS ADP 5.17928
62 4YAG NAI 5.19031
63 3HV8 C2E 5.22388
64 5LRT ADP 5.31496
65 4LJ3 C2E 5.37634
66 5ISY NAD 5.40541
67 4BUY F37 5.41667
68 3GE7 AFQ 5.44041
69 4F4P 0SB 5.49451
70 1QMG APX 5.53435
71 2ZX2 RAM 5.64103
72 4IPH 1FJ 5.69106
73 2GWD GLU 5.79065
74 5XDT ZI7 5.84416
75 1GP6 DH2 5.89888
76 1GP6 SIN 5.89888
77 1GP6 QUE 5.89888
78 5DBV COA 6.06742
79 4G6I RS3 6.19048
80 4J3L AJ5 6.19048
81 3ZOD FMN 6.28272
82 3ZOD HQE 6.28272
83 1F76 ORO 6.54762
84 2IXE ATP 6.64207
85 3D72 FAD 6.71141
86 2VL8 UDP 6.77656
87 2VL8 CTS 6.77656
88 5MF5 C2E 7.03125
89 5TUZ 7L6 7.27969
90 5TUZ SAM 7.27969
91 1USF FMN 7.30337
92 1USF NAP 7.30337
93 5M1T C2E 7.47331
94 5ZFJ 9BF 7.48899
95 3N7O N7O 7.52212
96 4M6T SAM 7.65027
97 5LX9 OLB 8.09859
98 1KQP ADJ 8.11808
99 5N0F 7K2 8.28729
100 5U6C 7YS 8.57143
101 4GLL NAD 8.60534
102 5N6N SUC 8.75
103 5O2D 9HH 9
104 3EM0 CHD 9.42029
105 4WT2 3UD 9.52381
106 1UPR 4IP 9.7561
107 1LNM DTX 9.78261
108 1NB9 ADP 10.2041
109 1NB9 RBF 10.2041
110 4AZ3 S35 10.3226
111 4NAT ADP 10.625
112 4NAT 2W5 10.625
113 3ZIA ADP 11.1511
114 4M4Q 21A 11.2033
115 2R3A SAM 12
116 6BQK Z1E 13.242
117 1U7Z PMT 13.2743
118 4XDY NAI 13.6095
119 3OA2 NAD 14.1509
120 3SUD SUE 14.2857
121 1NTV ASN PHE ASP ASN PRO VAL TYR ARG LYS THR 14.4737
122 3LQV ADE 18.2609
123 2CK3 ADP 22.6027
124 2QIE 8CS 35.0649
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