Receptor
PDB id Resolution Class Description Source Keywords
4PVD 2.4 Å EC: 1.1.1.283 CRYSTAL STRUCTURE OF YEAST METHYLGLYOXAL/ISOVALERALDEHYDE RE GRE2 COMPLEXED WITH NADPH SACCHAROMYCES CEREVISIAE ROSSMANN FOLD REDUCTASE NADPH BINDING OXIDOREDUCTASE
Ref.: STRUCTURAL INSIGHTS INTO THE COFACTOR-ASSISTED SUBS RECOGNITION OF YEAST METHYLGLYOXAL/ISOVALERALDEHYDE REDUCTASE GRE2 BIOCHIM.BIOPHYS.ACTA V.1844 1486 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NDP A:401;
B:401;
Valid;
Valid;
none;
none;
submit data
745.421 C21 H30 N7 O17 P3 c1nc(...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4PVD 2.4 Å EC: 1.1.1.283 CRYSTAL STRUCTURE OF YEAST METHYLGLYOXAL/ISOVALERALDEHYDE RE GRE2 COMPLEXED WITH NADPH SACCHAROMYCES CEREVISIAE ROSSMANN FOLD REDUCTASE NADPH BINDING OXIDOREDUCTASE
Ref.: STRUCTURAL INSIGHTS INTO THE COFACTOR-ASSISTED SUBS RECOGNITION OF YEAST METHYLGLYOXAL/ISOVALERALDEHYDE REDUCTASE GRE2 BIOCHIM.BIOPHYS.ACTA V.1844 1486 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4PVD - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4PVD - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4PVD - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NDP; Similar ligands found: 159
No: Ligand ECFP6 Tc MDL keys Tc
1 NDP 1 1
2 0WD 0.827273 1
3 NAI 0.803738 0.986842
4 NMN AMP PO4 0.794643 0.948052
5 NPW 0.692308 0.962025
6 NZQ 0.686441 0.987013
7 DG1 0.68 1
8 1DG 0.68 1
9 A2R 0.650943 0.909091
10 A22 0.64486 0.934211
11 TXP 0.644628 0.924051
12 ATR 0.640777 0.894737
13 NA7 0.636364 0.886076
14 XNP 0.620968 0.949367
15 AP0 0.598361 0.948718
16 A2P 0.598039 0.881579
17 NJP 0.574803 0.923077
18 25L 0.550847 0.934211
19 ODP 0.550388 0.936709
20 NAX 0.544 0.949367
21 25A 0.53913 0.921053
22 2AM 0.529412 0.87013
23 6V0 0.519685 0.974026
24 NAP 0.514493 0.922078
25 EAD 0.507143 0.949367
26 A2D 0.504673 0.921053
27 TXE 0.503876 0.935897
28 NA0 0.496454 0.910256
29 TXD 0.496124 0.911392
30 SAP 0.495575 0.875
31 AGS 0.495575 0.875
32 P1H 0.493056 0.925926
33 CO7 0.489796 0.791209
34 TAP 0.489362 0.864198
35 PAP 0.482456 0.907895
36 BA3 0.481818 0.921053
37 NAJ PZO 0.478261 0.924051
38 ATP 0.477876 0.921053
39 B4P 0.477477 0.921053
40 ADP 0.477477 0.921053
41 AP5 0.477477 0.921053
42 OAD 0.47541 0.897436
43 5FA 0.473684 0.921053
44 AR6 0.473684 0.896104
45 APR 0.473684 0.896104
46 AQP 0.473684 0.921053
47 AN2 0.473214 0.909091
48 3OD 0.467742 0.897436
49 50T 0.464912 0.884615
50 PO4 PO4 A A A A PO4 0.463415 0.857143
51 V3L 0.461538 0.896104
52 2A5 0.46087 0.85
53 A1R 0.459016 0.841463
54 ADQ 0.459016 0.897436
55 4AD 0.459016 0.875
56 OVE 0.458716 0.8375
57 OMR 0.458647 0.813953
58 PPS 0.457627 0.811765
59 AD9 0.456897 0.897436
60 CA0 0.45614 0.897436
61 M33 0.45614 0.884615
62 ADJ 0.455882 0.879518
63 A3P 0.455357 0.894737
64 ACP 0.452174 0.897436
65 ENP 0.451613 0.85
66 UP5 0.451128 0.948052
67 SRP 0.45 0.8625
68 ANP 0.449153 0.897436
69 ACQ 0.449153 0.897436
70 PRX 0.448276 0.82716
71 5AL 0.445378 0.884615
72 7D4 0.443478 0.8375
73 ADX 0.443478 0.811765
74 AMP 0.436364 0.894737
75 A 0.436364 0.894737
76 4TC 0.433824 0.924051
77 7D3 0.433628 0.8375
78 ETB 0.433566 0.797753
79 DCA 0.433566 0.788889
80 1ZZ 0.433071 0.802326
81 BIS 0.433071 0.864198
82 00A 0.432 0.864198
83 ATF 0.429752 0.886076
84 0T1 0.427586 0.788889
85 5SV 0.427419 0.788235
86 8QN 0.427419 0.884615
87 3AM 0.427273 0.857143
88 N01 0.426573 0.884615
89 PR8 0.425197 0.811765
90 WAQ 0.425197 0.841463
91 LAD 0.425197 0.821429
92 DTP 0.425 0.8375
93 AMO 0.424 0.886076
94 PAJ 0.424 0.843373
95 APC 0.423729 0.886076
96 UPA 0.423358 0.935897
97 48N 0.422222 0.853659
98 FYA 0.421875 0.860759
99 PTJ 0.421875 0.853659
100 CNA 0.421429 0.910256
101 PUA 0.42069 0.9125
102 NXX 0.419118 0.910256
103 DND 0.419118 0.910256
104 AV2 0.418033 0.848101
105 COA 0.417808 0.788889
106 3UK 0.417323 0.897436
107 OOB 0.416 0.909091
108 IVC 0.415584 0.78022
109 DAT 0.415254 0.8375
110 NDO 0.414966 0.897436
111 139 0.414286 0.901235
112 3AT 0.413223 0.896104
113 TAT 0.413223 0.886076
114 YLB 0.413043 0.784091
115 62F 0.4125 0.823529
116 ABM 0.412281 0.848101
117 YAP 0.412214 0.875
118 YLP 0.411765 0.784091
119 ME8 0.410853 0.802326
120 NB8 0.410853 0.853659
121 SON 0.410256 0.886076
122 DLL 0.409449 0.909091
123 AHX 0.409449 0.853659
124 COS 0.409396 0.771739
125 AMX 0.409396 0.797753
126 CAO 0.409396 0.763441
127 30N 0.409396 0.72449
128 7D5 0.409091 0.8125
129 4UW 0.408759 0.9125
130 APX 0.407692 0.841463
131 SRA 0.40708 0.85
132 CMX 0.406667 0.788889
133 SCO 0.406667 0.788889
134 TYM 0.405797 0.886076
135 COD 0.405594 0.777778
136 OXK 0.405229 0.771739
137 CA6 0.405229 0.70297
138 A12 0.405172 0.886076
139 AP2 0.405172 0.886076
140 9SN 0.40458 0.853659
141 LAQ 0.404412 0.802326
142 T5A 0.404255 0.914634
143 FAM 0.403974 0.771739
144 ACO 0.403974 0.763441
145 FCX 0.403974 0.763441
146 AMP MG 0.403509 0.825
147 VO4 ADP 0.403226 0.860759
148 ADP VO4 0.403226 0.860759
149 YLC 0.402878 0.823529
150 1VU 0.402597 0.763441
151 FA5 0.401515 0.886076
152 HAX 0.401316 0.771739
153 APU 0.4 0.923077
154 TXA 0.4 0.886076
155 A U 0.4 0.898734
156 4UU 0.4 0.948052
157 AFH 0.4 0.843373
158 CAJ 0.4 0.771739
159 AR6 AR6 0.4 0.871795
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4PVD; Ligand: NDP; Similar sites found: 309
This union binding pocket(no: 1) in the query (biounit: 4pvd.bio2) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1PTR PRB 0.03503 0.4096 None
2 2ZAT NAP 0.0000002148 0.54303 1.15385
3 3V1Y NAD 0.003324 0.40401 1.48368
4 1HDG NAD 0.004321 0.40228 1.50602
5 1QG6 TCL 0.00006134 0.49515 1.53257
6 1QG6 NAD 0.00006134 0.4087 1.53257
7 2EXX NAP 0.0005226 0.40676 1.63399
8 1VL0 NAI 0.000000351 0.56474 1.71233
9 4J7U YTZ 0.000009323 0.52789 1.73611
10 4J7U NAP 0.000009323 0.52789 1.73611
11 5GWE GWM 0.0321 0.40538 1.75439
12 1P31 EPU 0.01257 0.4003 1.75439
13 1Z6Z NAP 0.000002261 0.50816 1.77305
14 4FC7 COA 0.0000002073 0.59645 1.80505
15 4FC7 NAP 0.0000002073 0.47156 1.80505
16 5L53 NAP 0.000002157 0.50869 1.85185
17 1W6U NAP 0.0000001279 0.58826 1.98676
18 1W8D NAP 0.0000002103 0.57954 1.98676
19 1W73 NAP 0.0000002365 0.57747 1.98676
20 2AG5 NAD 0.0000004746 0.53118 2.03252
21 5LD5 NAD 0.00221 0.42004 2.04678
22 3CIF NAD 0.002572 0.40446 2.04678
23 1N5D NDP 0.0000003054 0.53145 2.08333
24 1LUA NAP 0.003621 0.41755 2.09059
25 2F1K NAP 0.002644 0.41076 2.15054
26 3C1O NAP 0.001882 0.40795 2.18069
27 4O0L NDP 0.00000003498 0.56359 2.18182
28 1GZ6 NAI 0.00002586 0.46328 2.19436
29 4O1M NAD 0.00005483 0.45837 2.22222
30 1SNY NAP 0.000001095 0.53986 2.24719
31 1X1T NAD 0.000000513 0.50758 2.30769
32 1YXM ADE 0.0216 0.40866 2.31023
33 1ORR NAD 0.0000001791 0.52702 2.33918
34 1F8I SIN 0.0279 0.40862 2.33918
35 1I9Z 2IP 0.02679 0.4028 2.33918
36 3NUG NAD 0.00000002287 0.61498 2.42915
37 1B8U NAD 0.001187 0.43831 2.43161
38 2RH4 EMO 0.00000004903 0.47228 2.52708
39 1WMA AB3 0.000001183 0.45304 2.53623
40 1WMA NDP 0.000001183 0.45304 2.53623
41 2YY7 NAD 0.0000001837 0.53913 2.5641
42 3RF4 FUN 0.03651 0.4024 2.58621
43 2FR1 NDP 0.000001239 0.50435 2.63158
44 4Q9N NAI 0.000102 0.44353 2.68456
45 3OJF NDP 0.00005587 0.43646 2.72374
46 3OJF IMJ 0.0000486 0.41639 2.72374
47 4AGQ P96 0.008846 0.40714 2.73973
48 5F5N NAD 0.00005645 0.47308 2.76817
49 1ZK4 NAP 0.0000005943 0.48954 2.78884
50 5UAV TFB 0.007618 0.40104 2.79503
51 5UAV NDP 0.007618 0.40104 2.79503
52 4D42 NAP 0.00002545 0.51797 2.83688
53 4D42 W0I 0.00002545 0.51797 2.83688
54 1XKQ NDP 0.000001374 0.49513 2.85714
55 1LSS NAD 0.01073 0.40026 2.85714
56 1N7G GDR 0.0000009699 0.41372 2.92398
57 1YS4 NAP 0.004224 0.41149 2.92398
58 1V6A TRE 0.007688 0.43876 3.01205
59 2GLX NDP 0.002027 0.41841 3.01205
60 2PV7 NAD 0.00177 0.4105 3.02013
61 5EPO NAP 0.00000127 0.54363 3.05344
62 1ZBQ NAD 0.00003248 0.45481 3.0581
63 4NBW NAD 0.0000001017 0.57103 3.11284
64 5KKA 6V0 0.002958 0.41293 3.20513
65 2X6T NAP 0.000000416 0.53283 3.21637
66 5JAQ NAI 0.0006148 0.4491 3.21637
67 4EUE NAI 0.0003709 0.41815 3.21637
68 2VT3 ATP 0.003055 0.44418 3.25581
69 2V7O DRN 0.0309 0.40225 3.27381
70 3R7F CP 0.03322 0.40577 3.28947
71 4KOA NDP 0.001581 0.4446 3.3033
72 5T9F TYR 0.001982 0.42599 3.32103
73 5T9F NAP 0.002637 0.4198 3.32103
74 5T9E NAP 0.001412 0.41853 3.32103
75 1NFQ NAI 0.00000005672 0.60142 3.46154
76 1OC2 NAD 0.0000002108 0.42595 3.50877
77 1OC2 TDX 0.0000002108 0.42595 3.50877
78 1ZH8 NAP 0.004426 0.4006 3.52941
79 1EQ2 NAP 0.000002343 0.5062 3.54839
80 1CER NAD 0.002072 0.41203 3.62538
81 1JA9 NDP 0.000001547 0.49918 3.64964
82 1ZX5 LFR 0.01297 0.40861 3.66667
83 3RFV NAI 0.000000938 0.53503 3.74532
84 3RFV 15L 0.00003179 0.48281 3.74532
85 4CIB 7UZ 0.03533 0.40476 3.80117
86 1U7T NAD 0.0000003149 0.55247 3.83142
87 1U7T TDT 0.0000008475 0.4591 3.83142
88 1R6D NAD 0.00000006139 0.63284 3.85757
89 1R6D DAU 0.0000001795 0.61169 3.85757
90 3A28 NAD 0.00000003739 0.57075 3.87597
91 4XB2 HSE 0.003174 0.41171 3.8806
92 4XB2 NDP 0.001248 0.41053 3.8806
93 4E13 NAD 0.002924 0.42153 3.88693
94 3SJU NDP 0.0000001344 0.54197 3.94265
95 1MXH DHF 0.0000002061 0.49084 3.98551
96 1MXH NAP 0.0000002444 0.48847 3.98551
97 5GT9 NAP 0.000002008 0.53767 4.18251
98 1GV0 NAD 0.001721 0.40265 4.19355
99 3VZS NAP 0.0000001573 0.46653 4.28016
100 1GEG NAD 0.0000001264 0.55198 4.29688
101 4IXW IXW 0.01028 0.4269 4.33071
102 4TQG NDP 0.000001112 0.52476 4.33437
103 5THQ NDP 0.0000002967 0.56863 4.41176
104 2EWM NAD 0.000000183 0.53809 4.41767
105 5T2U NAP 0.00000004166 0.60887 4.43548
106 1H5Q NAP 0.000000008106 0.58539 4.5283
107 3RKR NAP 0.002124 0.45676 4.58015
108 3WMX NAD 0.0000003138 0.56104 4.67836
109 1NVM NAD 0.00323 0.41266 4.67836
110 1D7O NAD 0.0001089 0.41693 4.7138
111 4NBU NAI 0.00000006115 0.55417 4.8
112 4ITU NAI 0.0000003506 0.51482 4.83271
113 4ITU 1HS 0.0000008166 0.45746 4.83271
114 1GAD NAD 0.001144 0.4221 4.84848
115 4CM9 NAP 0.0000001002 0.5873 4.86111
116 5K6A NAP 0.0000001048 0.58653 4.86111
117 4CLR NAP 0.0000001525 0.57787 4.86111
118 5JDI NAP 0.0000001832 0.57474 4.86111
119 3JQ7 NAP 0.0000001076 0.56972 4.86111
120 3JQG NAP 0.0000001247 0.56728 4.86111
121 4CLO NAP 0.0000001365 0.56588 4.86111
122 3JQA NAP 0.000000181 0.56128 4.86111
123 3JQB NAP 0.0000001884 0.56062 4.86111
124 4CME NAP 0.0000001315 0.55818 4.86111
125 3JQF NAP 0.00000009106 0.55537 4.86111
126 3BMN NAP 0.00000008962 0.55531 4.86111
127 3BMO NAP 0.0000001562 0.55504 4.86111
128 3BMQ NAP 0.00000009424 0.55477 4.86111
129 4CM8 NAP 0.0000001627 0.55447 4.86111
130 5JDC NAP 0.0000001746 0.55336 4.86111
131 4CM4 NAP 0.0000001753 0.55322 4.86111
132 4CMI NAP 0.0000001806 0.55281 4.86111
133 3JQ8 NAP 0.0000001143 0.55192 4.86111
134 5JCJ NAP 0.0000002017 0.55109 4.86111
135 3JQ9 NAP 0.0000001631 0.54654 4.86111
136 3JQF AX2 0.00173 0.47008 4.86111
137 3JQA DX4 0.005135 0.45154 4.86111
138 3BMN AX3 0.006274 0.44549 4.86111
139 4CLO XP0 0.0189 0.42077 4.86111
140 3JQ7 DX2 0.02327 0.41642 4.86111
141 3BMQ AX5 0.02425 0.41519 4.86111
142 3JQB DX6 0.03152 0.4058 4.86111
143 3JQG AX6 0.04423 0.40004 4.86111
144 1RKX NAD 0.00000004952 0.55823 4.97076
145 2WYV NAD 0.00006184 0.45521 4.98084
146 1LTH NAD 0.002557 0.41432 5.01567
147 3OA2 NAD 0.001112 0.41229 5.03145
148 1FK8 NAD 0.000000333 0.56564 5.05837
149 3QWI NAP 0.000000694 0.51044 5.18518
150 3QWI CUE 0.000001621 0.45077 5.18518
151 2VZ0 D64 0.000000978 0.60147 5.22388
152 2VZ0 NAP 0.000000978 0.60147 5.22388
153 2WD7 NAP 0.0000001671 0.55401 5.22388
154 2WD7 VGD 0.004887 0.45444 5.22388
155 1I2B USQ 0.006803 0.44607 5.26316
156 1I2B UPG 0.006803 0.44607 5.26316
157 1SB8 NAD 0.0000008379 0.43857 5.26316
158 1SB8 UD2 0.0000003824 0.4324 5.26316
159 1I2B NAD 0.0000004713 0.42212 5.26316
160 1A5Z NAD 0.005383 0.40706 5.32915
161 1UAY ADN 0.01084 0.4135 5.3719
162 2Q1W NAD 0.000001336 0.50529 5.40541
163 3ICC NAP 0.00000004892 0.54897 5.4902
164 3HB5 NAP 0.000000435 0.43958 5.50459
165 2WSB NAD 0.0000001466 0.59949 5.51181
166 4J1Q NDP 0.0000005127 0.55496 5.55556
167 5L4S NAP 0.000002305 0.54562 5.55556
168 5L4S 6KX 0.000002305 0.54562 5.55556
169 1IY8 NAD 0.0000001307 0.54277 5.61798
170 4MDH NAD 0.0004783 0.43181 5.68862
171 1LDN NAD 0.004154 0.40576 5.6962
172 5MDH NAD 0.00025 0.44234 5.70571
173 1GUZ NAD 0.002908 0.4092 5.80645
174 5IN4 NAP 0.00001012 0.59142 5.84795
175 5IN4 6CK 0.000009918 0.59142 5.84795
176 5IN4 GDP 0.00001116 0.58811 5.84795
177 1VKO NAD 0.0003688 0.41764 5.84795
178 4YAG NAI 0.000003909 0.54355 5.88235
179 3RJ5 NAD 0.0000002024 0.49393 5.90551
180 3ORF NAD 0.0000006057 0.53413 5.9761
181 2JAH NDP 0.0000003254 0.52897 6.07287
182 4MTI 2DX 0.03673 0.40477 6.08696
183 3KO8 NAD 0.00000002791 0.55783 6.08974
184 3O26 NDP 0.0000004596 0.56111 6.10932
185 4CQM NAP 0.00000004412 0.56699 6.13027
186 4KWI NAP 0.0000002513 0.47685 6.14035
187 4KWI 1TJ 0.0000002744 0.47048 6.14035
188 2PD4 DCN 0.0000424 0.44106 6.18182
189 2PD4 NAD 0.00005393 0.43802 6.18182
190 1A27 NAP 0.000000899 0.52193 6.22837
191 4NBT NAD 0.00000009463 0.56318 6.25
192 5MSO NAP 0.00000002289 0.60539 6.43275
193 2BD0 NAP 0.00000004309 0.55166 6.55738
194 1RPN NDP 0.0000004729 0.49621 6.56716
195 1U1I NAD 0.00009855 0.42811 6.63265
196 4ZA2 NAD 0.0000001929 0.57386 6.71937
197 4K26 NDP 0.000000202 0.53683 6.88406
198 4K26 SFF 0.0000007208 0.47244 6.88406
199 3B1F NAD 0.002575 0.42053 6.89655
200 2VUT NAD 0.004306 0.41432 6.97674
201 1X14 NAD 0.0122 0.40411 7.01754
202 3AY6 NAI 0.0000005243 0.48472 7.0632
203 3AY6 BGC 0.000001278 0.42362 7.0632
204 1XSE NDP 0.00000008231 0.49405 7.11864
205 1J0X NAD 0.004126 0.41906 7.22892
206 3GEG NAD 0.0000004667 0.54562 7.28745
207 2VN9 GVD 0.03846 0.40119 7.30897
208 2C5A GDC 0.0000008314 0.42063 7.30994
209 2C5A NAD 0.0000008314 0.42063 7.30994
210 4DC2 ADE 0.03498 0.40764 7.30994
211 3CH6 NAP 0.0000008746 0.59136 7.34266
212 3CH6 311 0.0000008746 0.40025 7.34266
213 1O6Z NAD 0.002076 0.41799 7.59076
214 1BXK NAD 0.00000006121 0.5705 7.60234
215 3TN7 NJP 0.0000002699 0.53335 7.7821
216 5ITV NAI 0.00000006395 0.59721 7.84314
217 2DKN NAI 0.00000006747 0.56917 7.84314
218 3MJE NDP 0.0000001671 0.54515 7.8629
219 2D2I NAP 0.004669 0.40663 7.89474
220 3QX9 ATP 0.01902 0.41817 7.97101
221 4HXY NDP 0.0000002892 0.53064 7.99087
222 1O5I NAD 0.000199 0.47599 8.03213
223 2BH9 NAP 0.001952 0.44461 8.18713
224 2HJR APR 0.0008147 0.43791 8.23171
225 1VL8 NAP 0.0000002049 0.52336 8.2397
226 3O03 NAP 0.0000007789 0.54564 8.24742
227 4JP3 CIT 0.0222 0.40207 8.3682
228 1G6H ADP 0.03848 0.40724 8.56031
229 3D3W NAP 0.00000007997 0.5975 9.01639
230 1PR9 NAP 0.00000004766 0.54283 9.01639
231 2Q1S NAI 0.000001077 0.5682 9.06433
232 3GGO ENO 0.003372 0.42077 9.06433
233 1GEE NAD 0.00000004735 0.56509 9.1954
234 2OS2 OGA 0.01569 0.42363 9.35672
235 3H4V DVP 0.0000001504 0.60223 9.375
236 3H4V NAP 0.0000004189 0.58226 9.375
237 3SJ7 NDP 0.0000001205 0.55909 9.52381
238 1DSS NAD 0.00352 0.40582 9.60961
239 2Q2V NAD 0.000000303 0.57429 9.80392
240 4FN4 NAD 0.0000002868 0.53859 9.84252
241 1HYE NAP 0.0004394 0.44896 9.90415
242 3H9E NAD 0.001897 0.41353 9.94152
243 2JAP NDP 0.00000006926 0.55203 10.1215
244 2CFC NAD 0.00000004827 0.5741 10.4
245 1XHL NDP 0.0000009165 0.55314 10.4377
246 3OID NDP 0.0000003008 0.51607 10.4651
247 1BDB NAD 0.000006009 0.47352 10.4693
248 1AE1 NAP 0.0000001506 0.52759 10.6227
249 1EDO NAP 0.00000004322 0.55044 10.6557
250 2AE2 NAP 0.00000009571 0.60713 10.7692
251 2AE2 PTO 0.00000009571 0.60713 10.7692
252 3V1U NAD 0.0000004406 0.56081 10.8187
253 2V6G NAP 0.000001695 0.50338 10.8187
254 2HK9 ATR 0.009993 0.42316 10.9091
255 3ZV6 NAD 0.000001704 0.4518 11.032
256 3ZV6 4HB 0.000001845 0.44663 11.032
257 4PIV NDP 0.000002692 0.49636 11.4035
258 1E5Q NDP 0.0006881 0.42199 11.4035
259 1E3W NAD 0.0000003612 0.53425 11.4943
260 2JL1 NAP 0.0002947 0.46008 11.4983
261 1E6W NAD 0.0000003294 0.53581 11.5385
262 2DTX BMA 0.00000002035 0.51284 12.5
263 4U7W NDP 0.000000000638 0.66886 12.5731
264 4OJP MAL 0.01136 0.42788 12.5731
265 2GDZ NAD 0.00000007558 0.59214 12.7341
266 2PZM UDP 0.00001713 0.5182 13.0303
267 2PZM NAD 0.00001713 0.41753 13.0303
268 3U4C NDP 0.00001352 0.4837 13.1673
269 1E7S NAP 0.00000004702 0.60467 13.3956
270 1P77 ATR 0.0247 0.41143 13.9706
271 1XG5 NAP 0.0000001515 0.54142 13.9785
272 2BKA NDP 0.000001584 0.51812 14.0496
273 3LU1 NAD 0.0000002278 0.5425 14.3275
274 4QED NAP 0.0000001488 0.54866 14.5161
275 3AFN NAP 0.0000002352 0.57871 14.7287
276 1G0N NDP 0.0000002195 0.58897 15.5477
277 1G0N PHH 0.0000003457 0.58571 15.5477
278 5L4L NAP 0.000001672 0.5227 15.7895
279 5L4L 7OX 0.000008681 0.52215 15.7895
280 1Q7B NAP 0.0000001653 0.54604 16.8033
281 1HDO NAP 0.000001386 0.48932 16.9903
282 3A4V NAD 0.0000001872 0.50777 17.3502
283 3A4V PYR 0.0000001872 0.50777 17.3502
284 1ZEM NAD 0.0000002414 0.56548 17.5573
285 1OAA OAA 0.00000095 0.45112 17.7606
286 2Q46 NAP 0.000004842 0.5016 18.1818
287 2BGM NAJ 0.00000006921 0.58664 18.705
288 1UZN NAP 0.00005581 0.42817 19.0283
289 4OSP NAP 0.0000002176 0.54997 20.1521
290 3OIG NAD 0.00003736 0.47453 21.6374
291 2B4Q NAP 0.0000003563 0.53526 23.0994
292 3WXB NDP 0.0000002703 0.53318 24.7312
293 4GLL NAD 0.00000009692 0.53953 25.5193
294 1JAY NAP 0.005199 0.40769 26.4151
295 1KEW TYD 0.00000006704 0.45445 27.4854
296 1KEW NAD 0.0000001666 0.44094 27.4854
297 1EK6 NAI 0.0000003284 0.42863 30.4094
298 1EK6 UPG 0.0000003555 0.42249 30.4094
299 1Z45 NAD 0.000000056 0.56356 30.9942
300 1UDB NAD 0.0000004506 0.43274 31.0651
301 4ZRN NAD 0.00000004483 0.53591 33.9744
302 4ZRN UPG 0.0000003611 0.44053 33.9744
303 2PK3 A2R 0.0000002416 0.60332 34.891
304 1WVG APR 0.000002129 0.53364 35.9649
305 1GY8 NAD 0.0000001284 0.54248 36.5497
306 2C29 DQH 0.0000000005143 0.53578 42.1365
307 2C29 NAP 0.0000000005143 0.53578 42.1365
308 1Y1P NMN AMP PO4 0.0000000001294 0.71803 46.7836
309 4R1S NAP 0.00000000000008682 0.81685 48.368
Pocket No.: 2; Query (leader) PDB : 4PVD; Ligand: NDP; Similar sites found: 8
This union binding pocket(no: 2) in the query (biounit: 4pvd.bio1) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4JGP PYR 0.02999 0.40833 2.76498
2 3QPB URA 0.03168 0.40575 3.90071
3 5KR7 6X9 0.02407 0.40398 4.67836
4 1UWK NAD 0.01281 0.40023 5.26316
5 1P7T PYR 0.03951 0.4013 5.55556
6 1KSK URA 0.01561 0.41902 6.41026
7 4B1L FRU 0.01872 0.41042 10.9091
8 3QVL 5HY 0.03366 0.40428 11.4286
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