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Receptor
PDB id Resolution Class Description Source Keywords
4PC3 1.83 Å NON-ENZYME: OTHER ELONGATION FACTOR TU:TS COMPLEX WITH PARTIALLY BOUND GDP ESCHERICHIA COLI G:GEF:GDP COMPLEX ELONGATION FACTOR TRANSLATION PROTEIN S
Ref.: STRUCTURAL OUTLINE OF THE DETAILED MECHANISM FOR EL FACTOR TS-MEDIATED GUANINE NUCLEOTIDE EXCHANGE ON E FACTOR TU. J.STRUCT.BIOL. V. 191 10 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL C:302;
B:402;
D:301;
C:301;
D:302;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
GDP B:401;
A:401;
Valid;
Valid;
none;
Atoms found LESS than expected: % Diff = 0;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4PC3 1.83 Å NON-ENZYME: OTHER ELONGATION FACTOR TU:TS COMPLEX WITH PARTIALLY BOUND GDP ESCHERICHIA COLI G:GEF:GDP COMPLEX ELONGATION FACTOR TRANSLATION PROTEIN S
Ref.: STRUCTURAL OUTLINE OF THE DETAILED MECHANISM FOR EL FACTOR TS-MEDIATED GUANINE NUCLEOTIDE EXCHANGE ON E FACTOR TU. J.STRUCT.BIOL. V. 191 10 2015
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 4PC6 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
2 4PC3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 4PC2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 4PC6 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
2 4PC3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 4PC2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 4PC6 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
2 4PC3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 4PC2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4PC3; Ligand: GDP; Similar sites found with APoc: 572
This union binding pocket(no: 1) in the query (biounit: 4pc3.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 4REP FAD 1.52284
2 1V8K ANP 1.77305
3 4ZNL BEF ADP 1.82482
4 1XKV ATP 2.12766
5 1G6O ADP 2.12766
6 1NST A3P 2.12766
7 4B9E FAH 2.12766
8 5MEX SZZ 2.17391
9 5MEX PAP 2.17391
10 3NHB ADP 2.28426
11 3DEF GDP 2.29008
12 5HCN GCP 2.29885
13 3BER AMP 2.40964
14 2J5V PCA 2.45232
15 3ZQ6 ADP ALF 2.46914
16 2G77 GDP 2.48227
17 1YTM ATP 2.48227
18 2G77 AF3 2.48227
19 4P4T GDP 2.5
20 5BQ5 ADP BEF 2.6455
21 1G41 ADP 2.79188
22 3DZD ADP 2.83688
23 1YZQ GNP 2.94118
24 3QKT ANP 2.94985
25 1ZUI SKM 2.97619
26 3Q72 GNP 3.01205
27 5I0H ADP BEF 3.04569
28 5TIV A3P 3.16206
29 5TSH ADP 3.19149
30 5TSH ANP 3.19149
31 1K6M AGS 3.19149
32 2VVG ADP 3.19149
33 3QVV 3QV 3.19149
34 3QVV A3P 3.19149
35 3FIU POP 3.21285
36 1P72 ADP 3.29341
37 1QF5 GDP 3.29949
38 1QF5 RPL 3.29949
39 4PJ3 ANP 3.29949
40 2B8W ALF 5GP 3.35366
41 1JJV ATP 3.39806
42 5XC5 GTP 3.40909
43 3FYH ADP 3.41615
44 5X40 ACP 3.42466
45 1T5C ADP 3.4384
46 2WKQ GTP 3.5461
47 1GOJ ADP 3.5461
48 2DPY ADP 3.5461
49 3ITJ CIT 3.5461
50 2I4I AMP 3.5461
51 3TBK ANP 3.5533
52 1ZRH A3P 3.64964
53 1S3G AP5 3.68664
54 2Z5F A3P 3.69128
55 5UQW GDP 3.7037
56 3QXC ATP 3.71901
57 2VWT PYR 3.74532
58 1KMQ GNP 3.80435
59 1Z06 GNP 3.80711
60 3HU3 AGS 3.80711
61 1RJW ETF 3.83481
62 5GVR LMR 3.84615
63 1JJ7 ADP 3.84615
64 1VKJ A3P 3.85965
65 5M04 GDP 3.88889
66 4FCW ADP 3.90071
67 4PFO ADP 3.90071
68 2A2C ADP 3.90071
69 2A2C NG1 3.90071
70 3B7G ANP 3.91304
71 1TX4 ALF GDP 3.9548
72 3I7S PYR 4.10959
73 1ION ADP 4.11523
74 1VHT BA3 4.12844
75 4LPS GDP 4.13223
76 3BOS CDP 4.13223
77 3Q85 GNP 4.14201
78 2GDJ ANP 4.16667
79 1G3Q ADP 4.21941
80 4AG5 ADP 4.25532
81 5WRI A3P 4.25532
82 2XAU ADP 4.25532
83 3QDK QDK 4.25532
84 5WRJ A3P 4.29043
85 2GJ5 VD3 4.32099
86 3RWO GDP 4.32432
87 5L3V GDP 4.34783
88 1OE0 TTP 4.34783
89 4PX9 ADP 4.45205
90 2GCN GDP 4.47761
91 2GCO GNP 4.47761
92 4U00 ADP 4.5082
93 2F9L GDP 4.52261
94 3QBT GNP 4.5977
95 1IHU ADP 4.60993
96 1IHU AF3 4.60993
97 2BIF ANP 4.60993
98 2BIF SIN 4.60993
99 1RRC ADP 4.60993
100 1LDN FBP 4.60993
101 3QF7 ANP 4.65753
102 4X8O AP5 4.6729
103 1KSK URA 4.70085
104 1Z08 GNP 4.70588
105 1OIV GDP 4.71204
106 1OIX GDP 4.71204
107 1NY5 ADP 4.82234
108 4O33 3PG 4.82234
109 4O33 TZN 4.82234
110 1VG0 GDP 4.83092
111 1VG8 GNP 4.83092
112 2CHG ANP 4.86726
113 3COB ADP 4.87805
114 2JAQ DCP 4.87805
115 1DAK DPU 4.91071
116 1DAK ADP 4.91071
117 5LLB 6YZ 4.94297
118 1KY3 GDP 4.94506
119 2W58 ADP 4.9505
120 2FAH GDP 4.96454
121 4GOX A3P 4.96454
122 2AWN ADP 4.96454
123 5AHO TLA 4.96454
124 5XKT GNP 5
125 4Q1A UDP 5
126 4Q1A 2XZ 5
127 4LJ9 ACP 5.01475
128 1H74 ADP 5.06757
129 2ZEJ GDP 5.07614
130 1LVK MNT BEF 5.07614
131 1W5T ANP 5.07614
132 1W5T ADP 5.07614
133 4TTQ ATP 5.11628
134 3KJI ADP 5.11811
135 1H65 GDP 5.18518
136 1T3D CYS 5.19031
137 2O0J ADP 5.19481
138 2D2F ADP 5.2
139 3H86 AP5 5.20833
140 2V5K OXM 5.22648
141 1TU3 GNP 5.26316
142 5KUT GDP 5.29101
143 1R2Q GNP 5.29412
144 1XMV ADP 5.31915
145 4R2I ANP 5.31915
146 2NCD ADP 5.32995
147 1RM4 NDP 5.34125
148 3BD9 A3P 5.35714
149 1F2U ATP 5.36913
150 4NON GDP 5.38462
151 2D7C GTP 5.38922
152 1VG1 GDP 5.40541
153 1VG9 GDP 5.40541
154 1RYH GNP 5.41872
155 3CYI ATP 5.45455
156 3HY2 ATP 5.45455
157 5U32 GDP 5.50847
158 2QG6 NMN 5.52764
159 2ZE7 DST 5.5336
160 1UJ2 ADP 5.55556
161 1UJ2 C5P 5.55556
162 1WF3 GNP 5.58376
163 6CRK GDP 5.58376
164 1GP2 GDP 5.58376
165 5KDO GDP 5.58376
166 1SVK ALF GDP 5.58376
167 1Z0F GDP 5.58659
168 3VX3 ADP 5.64516
169 2XTZ GSP 5.67376
170 5BN3 ADP 5.67376
171 2Q2Y ADP 5.67376
172 2Q2Y MKR 5.67376
173 2C9O ADP 5.67376
174 1SVM ATP 5.67376
175 3FVQ ATP 5.67376
176 2X7I CIT 5.67376
177 4A4Z ANP 5.67376
178 6FA4 GNP 5.78035
179 3DC4 ADP 5.81395
180 2RGX AP5 5.82524
181 2BEK ATP 5.83658
182 2IXE ATP 5.83756
183 4B5W PYR 5.85938
184 2BME GNP 5.91398
185 1MH1 GNP 5.91398
186 1BO4 COA 5.95238
187 1G4U GDP 5.97826
188 2QQ0 ANP 5.97826
189 2QQ0 THM 5.97826
190 2QQ0 TMP 5.97826
191 2QQ0 ADP 5.97826
192 1KAO GDP 5.98802
193 4MKG AP5 5.99078
194 4MKF AP5 5.99078
195 4D0N GDP 6.02837
196 5KSZ GCP 6.02837
197 5LB3 ADP 6.02837
198 4FRZ ADP 6.02837
199 5ZXD ATP 6.02837
200 1IN4 ADP 6.02837
201 1CR1 TTP 6.02837
202 4ZG4 VO4 ADP 6.02837
203 1XP8 AGS 6.02837
204 1BH2 GSP 6.03175
205 3FWY ADP 6.05096
206 3T1O GDP 6.06061
207 6AIC AMP 6.07477
208 3RC3 ANP 6.09137
209 3DKP ADP 6.12245
210 5ZBR ANP 6.13333
211 3IUY AMP 6.14035
212 4U5X GNP 6.17978
213 2HF9 GSP 6.19469
214 1FP6 ADP 6.34518
215 1X6V ADP 6.34518
216 1Z6T ADP 6.34518
217 2PL3 ADP 6.35593
218 1GOT GDP 6.38298
219 1TAD GDP 6.38298
220 1TAD ALF 6.38298
221 1IWE IMP 6.38298
222 1W0J ADP 6.38298
223 2CK3 ANP 6.38298
224 2ZFI ADP 6.38298
225 3ZFD ANP 6.38298
226 4GBM A3P 6.38298
227 2CK3 ADP 6.38298
228 1L2T ATP 6.38298
229 1W0J ADP BEF 6.38298
230 4QM7 GTP 6.43275
231 1EK0 GNP 6.47059
232 4V0K GDP 6.50888
233 5Z2M GTP 6.52174
234 4UXH T5A 6.52174
235 1GXU 2HP 6.59341
236 2J0V GDP 6.60377
237 4M9Q GNP 6.60793
238 1JI0 ATP 6.66667
239 2B8T THM 6.72646
240 1P9B GDP 6.73759
241 3ZS9 ADP ALF 6.73759
242 2WOJ ADP ALF 6.73759
243 1OS1 PYR 6.73759
244 1OS1 ATP 6.73759
245 4IDN GNP 6.73759
246 1F9V ADP 6.85279
247 5IRC GDP 6.96517
248 2XT3 ADP 6.97674
249 5UIV ADP 7.04846
250 4KFU ACP 7.07547
251 1OXV ANP 7.08215
252 1R6B ADP 7.0922
253 1X8J A3P 7.0922
254 4KBF AMP 7.0922
255 2RCN GDP 7.1066
256 3P4X ADP 7.1066
257 4QOS ADP 7.1066
258 5BYK A3P 7.1066
259 5BYK OAQ 7.1066
260 1FZQ GDP 7.18232
261 3REF GDP 7.2165
262 6GAS FAD 7.25076
263 2BCG GDP 7.28155
264 2VB6 ADP BEF 7.38255
265 1D5C GDP 7.40741
266 3FB4 AP5 7.40741
267 4LC1 GDP 7.4184
268 4D81 ADP 7.42049
269 2ZPA ADP 7.44681
270 2W2X GSP 7.56757
271 2V7Q ATP 7.57576
272 2V7Q ADP 7.57576
273 3MD0 GDP 7.60563
274 3E70 GDP 7.62195
275 1Z83 AP5 7.65306
276 1YVD GNP 7.69231
277 1OW3 GDP 7.77202
278 5L3S GNP 7.80142
279 5L3W GDP 7.80142
280 4IOK XPO 7.80142
281 4IOK ADP 7.80142
282 6C0B MLI 7.80142
283 4YS0 ADP 7.80142
284 5L3S G 7.80142
285 4OI4 ATP 7.82609
286 4NU0 AP5 7.8341
287 2IS6 ADP 7.86802
288 3TMK T5A 7.87037
289 5OCG GNP 7.93651
290 4BQS K2Q 7.95455
291 4BQS ADP 7.95455
292 1BG2 ADP 8
293 1B0U ATP 8.01527
294 1AQU A3P 8.08081
295 1YZN GNP 8.10811
296 1YQT ADP 8.12183
297 5YV5 ADP 8.12183
298 1TQ4 GDP 8.15603
299 3CX8 GSP 8.15603
300 3AB3 GDP 8.15603
301 1RJ9 GCP 8.15603
302 2IYL GDP 8.15603
303 4WZA ACP 8.15603
304 4WZA ADP 8.15603
305 2GKS ADP 8.15603
306 4R43 GDP 8.15603
307 1OYY AGS 8.15603
308 1FQK GDP 8.16327
309 3MWL 8OX 8.21256
310 5O74 GDP 8.33333
311 1DS6 GDP 8.33333
312 1I4D GDP 8.33333
313 1E96 GTP 8.37438
314 3M1I GTP 8.37696
315 2KIN ADP 8.40336
316 4C4P GNP 8.41121
317 1PUJ GNP 8.51064
318 3TK1 GDP 8.51064
319 1F5N GNP 8.51064
320 4WZ6 ATP 8.51064
321 5MZN ADP 8.51064
322 4HI0 GDP 8.54271
323 1ZJ6 G3D 8.55615
324 3SBD GNP 8.55615
325 2OFW ADX 8.65385
326 2F3R G5P 8.69565
327 1Z0K GTP 8.72093
328 1T8U UAP SGN IDS SGN 8.82353
329 1T8U A3P 8.82353
330 3A4M ADP 8.84615
331 5O2T GSP 8.86525
332 5I34 GDP 8.86525
333 4DCT GDP 8.88325
334 1S8F GDP 8.88325
335 1NHX PEP 8.88325
336 1NHX FTB 8.88325
337 2GMV UN8 8.88325
338 2GMV PEP 8.88325
339 5KSP GDP 8.94737
340 2XTN GTP 8.97436
341 2FJU GSP 8.98876
342 5NM7 GLY 9.02256
343 1O3Y GTP 9.03614
344 3B5J 12D 9.0535
345 1LVG ADP 9.09091
346 1RE0 GDP 9.14634
347 1S9D GDP 9.14634
348 2ZR9 DTP 9.21986
349 4IEE AGS 9.21986
350 1G3M A3P 9.21986
351 1G3M PCQ 9.21986
352 4GDX GLU 9.23077
353 6B8B ADP 9.23695
354 1M7B GTP 9.23913
355 2C5L GTP 9.24856
356 4NE2 ADP 9.28144
357 4NE2 SH2 9.28144
358 4K81 GTP 9.35672
359 4TMK T5A 9.38967
360 2GK6 ADP 9.39086
361 1W78 ADP 9.39086
362 2QEN ADP 9.42857
363 3IIJ ADP 9.44444
364 5E5U MLI 9.4697
365 1M2O GNP 9.47368
366 2PEZ GGZ 9.49721
367 2PEZ DAT 9.49721
368 3UIE ANP 9.5
369 4HSE ADP 9.57447
370 6D5J GNP 9.58084
371 6D5E GNP 9.58084
372 6D59 GNP 9.58084
373 6BVJ GNP 9.58084
374 6D5L GNP 9.58084
375 6BVL GNP 9.58084
376 6BVK GNP 9.58084
377 6BVI GNP 9.58084
378 6D5V GNP 9.58084
379 6D55 GNP 9.58084
380 6D56 GNP 9.58084
381 6D5G GNP 9.58084
382 6D5H GNP 9.58084
383 6D5M GNP 9.58084
384 6BVM GNP 9.58084
385 3BFV ADP 9.5941
386 1WQ1 GDP 9.63855
387 1CLU DBG 9.63855
388 3KUD GDP 9.63855
389 3DDC GNP 9.63855
390 1NVV GNP 9.63855
391 4BFW ZVW 9.74843
392 1OFH ADP 9.77011
393 1UKZ ADP 9.85222
394 3KTA AP5 9.89011
395 4ZDJ UTP 9.89848
396 2OG2 MLI 9.92908
397 3B9Q MLI 9.92908
398 5L3R GCP 9.92908
399 1E2K TMC 9.92908
400 1NJF AGS 10
401 1NJF ADP 10
402 2D7D ADP 10
403 4BAS GNP 10.0503
404 1SQ5 ADP 10.0649
405 5CK5 GDP 10.1266
406 3WKX FUB 10.1523
407 1NF3 GNP 10.2564
408 5UPK GNP 10.2703
409 4TL6 ANP 10.2767
410 2Y65 ADP 10.2837
411 1D2N ANP 10.2941
412 1QF9 ALF 10.3093
413 1QF9 ADP 10.3093
414 1QF9 C5P 10.3093
415 5HPY GDP 10.3448
416 1ZIN AP5 10.4061
417 2ZJ5 ADP 10.4061
418 3GJ8 GDP 10.4072
419 3GJ0 GDP 10.4072
420 2CJW GDP 10.4167
421 1XEX ATP 10.4396
422 2NGR GDP 10.4712
423 1A4R GNH 10.4712
424 1A4R GDP 10.4712
425 1GRN GDP 10.4712
426 4ITR GDP 10.4712
427 5Y6Q FAD 10.4938
428 2UZI GTP 10.5769
429 2ZPT A3P 10.6383
430 5BXQ GDP 10.6481
431 1IBR GNP 10.6481
432 2A9K GDP 10.6952
433 1GWN GTP 10.7317
434 4HDO GNP 10.7784
435 2QTV GNP 10.7784
436 1KO8 6PG 10.8571
437 1U0J ADP 10.8614
438 5AK0 8V1 10.9929
439 5HR5 ADP 10.9929
440 1FNN ADP 10.9929
441 3BFX A3P 10.9929
442 2FSH ANP 10.9929
443 5N69 ADP 11.0553
444 4H1V GNP 11.1111
445 6AU6 GDP 11.1675
446 5Y6N ADP 11.1675
447 6B4K ANP 11.1675
448 3GJ7 GDP 11.2245
449 1ZC3 GNP 11.4286
450 2QZ4 ADP 11.4504
451 5EXT ADP 11.5385
452 4WOP CTP 11.5556
453 3ZIA ATP 11.5942
454 3ZIA ADP 11.5942
455 3T12 GDP ALF 11.7647
456 5WLB GNP 11.7647
457 6BSX GDP 11.7978
458 6BSX E7S 11.7978
459 1M7G AV2 11.8483
460 1M7G ADX 11.8483
461 1M7G ADP 11.8483
462 1U8Z GDP 11.9048
463 2YOH WMJ 11.9048
464 2A5J GDP 12.0419
465 6CS8 F9Y 12.0567
466 5Z69 AGS 12.0968
467 2CE7 ADP 12.1827
468 1YZG GDP 12.2905
469 2WIC GNP 12.3596
470 1HE1 GDP 12.5926
471 3H4S ADP 12.5926
472 1CS4 GSP 12.6904
473 4IHQ ADP 12.766
474 1Q20 A3P 12.766
475 1Q20 PLO 12.766
476 1B7T ADP 12.8205
477 1G6H ADP 12.8405
478 4HAT GNP 12.8571
479 2FFQ GSP 12.8655
480 1KK8 BEF ADP 12.9496
481 1WA5 GTP 13.0682
482 1Z2A GDP 13.0952
483 1Z0A GDP 13.2184
484 2ORV 4TA 13.2479
485 1MR3 G3D 13.2597
486 6DEF GCP 13.2992
487 1SVI GDP 13.3333
488 2HT6 GDP 13.4518
489 4NCN GTP 13.4518
490 6C90 ADP 13.4615
491 1AKY AP5 13.6364
492 5H4S RAM 13.7324
493 3T5G GDP 13.8158
494 5TB5 GDP 14
495 5TAR GDP 14.1892
496 2A5F GTP 14.5078
497 3RLF ANP 14.539
498 1XX6 ADP 14.6597
499 3RAB GNP 14.7929
500 4DID GDP 15.1316
501 3GJ4 GDP 15.1515
502 1G16 GDP 15.2941
503 5UWH GNP 15.3846
504 5UWO GNP 15.3846
505 5UWQ GNP 15.3846
506 5UWP GNP 15.3846
507 5UWU GNP 15.3846
508 5UWS GNP 15.3846
509 5UWJ GNP 15.3846
510 6CIT GNP 15.3846
511 5UWW GNP 15.3846
512 5UWT GNP 15.3846
513 5UWR GNP 15.3846
514 5UWI GNP 15.3846
515 5DI9 GNP 15.3846
516 1G7S GDP 15.4822
517 1DAR GDP 15.4822
518 3EC1 GDP 15.4822
519 4YMU ATP 15.8333
520 1W4R TTP 15.8974
521 4B47 GDP 15.978
522 1F6B GDP 16.1616
523 2WHX ADP 16.2437
524 2JLR ANP 16.2437
525 2OM2 GDP 16.6667
526 1UPT GTP 16.6667
527 2GJ8 ALF GDP 16.8605
528 3A1S GDP 17.0543
529 1W7J ADP BEF 17.2185
530 1CXZ GSP 17.4419
531 4XTR ADP 17.5115
532 4XTR ATP 17.5115
533 4XVU ATP 17.5115
534 3W5J GDP 17.5127
535 1KSH GDP 18.2796
536 1NRJ GTP 18.3486
537 3BC1 GNP 18.4615
538 1NN5 ANP 18.6047
539 1NN5 2DT 18.6047
540 2HV8 GTP 18.75
541 4CVN ADP 18.8482
542 1MKY GDP 19.5431
543 1R4A GNP 19.6078
544 1ZD9 GDP 19.6809
545 4R98 GNH 19.9262
546 3GJ3 GDP 21.2121
547 1GUA GNP 21.5569
548 1YRB GDP 21.7557
549 1LFD GNP 21.8391
550 1Z0J GTP 22.0339
551 5ZB0 ADP 22.7273
552 5ZB0 TYD 22.7273
553 1X1R GDP 23.5955
554 2ODE ALF GDP 24.1135
555 6G14 G4P 24.3655
556 2CDN ADP 24.8756
557 2WJG GDP 26.0638
558 3PQC GDP 26.1538
559 3GJ5 GDP 26.4706
560 3CH5 GDP 28.8462
561 1J2J GTP 28.8889
562 2WJH GDP 29.5181
563 2WJH FLC 29.5181
564 5FG3 GDP 29.6954
565 1FQJ GDP 30.9524
566 5DIF GNP 31.5789
567 5YT0 GDP 31.5934
568 2FH5 GTP 33.1776
569 3MJH GTP 35.2941
570 4RD0 GDP 35.7868
571 2QN6 GDP 36.0406
572 1KK1 GNP 42.3858
573 1Y3A GDP 50
Pocket No.: 2; Query (leader) PDB : 4PC3; Ligand: GDP; Similar sites found with APoc: 9
This union binding pocket(no: 2) in the query (biounit: 4pc3.bio2) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 2GWH A3P 3.90071
2 5EP2 AZU 4.29688
3 2I7C AAT 4.96454
4 3MGB PAP 5.83756
5 5TWB FAD 8.51064
6 6F7L FAD 9.57447
7 4DDY DN6 11.7871
8 4QRH 0O2 13.3333
9 4HUT ATP 13.6126
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