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Receptor
PDB id Resolution Class Description Source Keywords
4NC7 2 Å EC: 1.-.-.- N-TERMINAL DOMAIN OF DELTA-SUBUNIT OF RNA POLYMERASE COMPLEX I3C AND NICKEL IONS BACILLUS SUBTILIS NUCLEUS TRANSCRIPTION
Ref.: X-RAY VS. NMR STRUCTURE OF N-TERMINAL DOMAIN OF DELTA-SUBUNIT OF RNA POLYMERASE. J.STRUCT.BIOL. V. 187 174 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NI B:101;
A:102;
Part of Protein;
Part of Protein;
none;
none;
submit data
58.693 Ni [Ni+2...
I3C A:101;
Valid;
none;
submit data
558.835 C8 H4 I3 N O4 c1(c(...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4NC7 2 Å EC: 1.-.-.- N-TERMINAL DOMAIN OF DELTA-SUBUNIT OF RNA POLYMERASE COMPLEX I3C AND NICKEL IONS BACILLUS SUBTILIS NUCLEUS TRANSCRIPTION
Ref.: X-RAY VS. NMR STRUCTURE OF N-TERMINAL DOMAIN OF DELTA-SUBUNIT OF RNA POLYMERASE. J.STRUCT.BIOL. V. 187 174 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 318 families.
1 4NC7 - I3C C8 H4 I3 N O4 c1(c(c(c(c....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 280 families.
1 4NC7 - I3C C8 H4 I3 N O4 c1(c(c(c(c....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 187 families.
1 4NC7 - I3C C8 H4 I3 N O4 c1(c(c(c(c....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: I3C; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 I3C 1 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4NC7; Ligand: I3C; Similar sites found with APoc: 5
This union binding pocket(no: 1) in the query (biounit: 4nc7.bio1) has 6 residues
No: Leader PDB Ligand Sequence Similarity
1 2Z7I 742 None
2 2BW7 ECS 4.0404
3 2BW7 APC 4.0404
4 4OKZ 3E9 5.05051
5 5ICK FEZ 7.07071
Pocket No.: 2; Query (leader) PDB : 4NC7; Ligand: I3C; Similar sites found with APoc: 17
This union binding pocket(no: 2) in the query (biounit: 4nc7.bio2) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 3KPB SAM None
2 5UR6 8KM None
3 1F06 NDP None
4 4OR7 NAP None
5 3KJS NAP 5.05051
6 3EEL 53T 5.05051
7 4CFP NAG AMU NAG AMV 7.07071
8 3GZ8 APR 7.07071
9 4LAE NAP 8.08081
10 4LAE 1VM 8.08081
11 1GZ6 NAI 8.08081
12 3IA4 NDP 8.08081
13 1NMK SFM 9.09091
14 1ZBQ NAD 9.09091
15 2PUL ACP 9.09091
16 2H29 DND 11.1111
17 3IWK NAD 19.1919
Pocket No.: 3; Query (leader) PDB : 4NC7; Ligand: I3C; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 4nc7.bio2) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 4NC7; Ligand: I3C; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 4nc7.bio4) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 4NC7; Ligand: I3C; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 4nc7.bio4) has 11 residues
No: Leader PDB Ligand Sequence Similarity
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