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Receptor
PDB id Resolution Class Description Source Keywords
4M9Q 2.5 Å EC: 3.6.5.2 CRYSTAL STRUCTURE OF C-TERMINALLY TRUNCATED ARL13B FROM CHLA RHEINHARDTII BOUND TO GPPNHP CHLAMYDOMONAS REINHARDTII GTPASE G DOMAIN JOUBERT SYNDROME CILIA HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO THE SMALL G-PROTEIN ARL13B IMPLICATIONS FOR JOUBERT SYNDROME. BIOCHEM.J. V. 457 301 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SO4 C:303;
B:303;
A:303;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
MG C:302;
A:302;
B:302;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
GNP B:301;
A:301;
C:301;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
522.196 C10 H17 N6 O13 P3 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4M9Q 2.5 Å EC: 3.6.5.2 CRYSTAL STRUCTURE OF C-TERMINALLY TRUNCATED ARL13B FROM CHLA RHEINHARDTII BOUND TO GPPNHP CHLAMYDOMONAS REINHARDTII GTPASE G DOMAIN JOUBERT SYNDROME CILIA HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO THE SMALL G-PROTEIN ARL13B IMPLICATIONS FOR JOUBERT SYNDROME. BIOCHEM.J. V. 457 301 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 17 families.
1 4M9Q - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 10 families.
1 4M9Q - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 4M9Q - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GNP; Similar ligands found: 132
No: Ligand ECFP6 Tc MDL keys Tc
1 GNP 1 1
2 9GM 1 1
3 GDP 0.839506 0.973684
4 GP3 0.82716 0.948718
5 GTP 0.809524 0.973684
6 GNH 0.807229 0.986842
7 G1R 0.77907 0.961039
8 GCP 0.77907 0.948718
9 GSP 0.770115 0.925
10 5GP 0.756098 0.960526
11 G 0.756098 0.960526
12 G2R 0.747253 0.936709
13 GMV 0.747126 0.948718
14 GAV 0.714286 0.936709
15 GP2 0.712644 0.936709
16 G2P 0.711111 0.936709
17 Y9Z 0.708333 0.880952
18 GDC 0.690722 0.936709
19 GDD 0.690722 0.936709
20 GKE 0.690722 0.936709
21 G5P 0.686869 0.948718
22 GPG 0.684211 0.936709
23 GTG 0.683673 0.91358
24 GDR 0.683673 0.936709
25 GFB 0.683673 0.936709
26 JB2 0.68 0.936709
27 GKD 0.68 0.936709
28 6CK 0.676768 0.91358
29 G3A 0.676768 0.948718
30 GDX 0.673267 0.948718
31 ALF 5GP 0.67033 0.86747
32 YGP 0.663265 0.879518
33 GPD 0.656863 0.902439
34 ALF GDP 0.645833 0.86747
35 GDP AF3 0.645833 0.86747
36 GDP ALF 0.645833 0.86747
37 JB3 0.641509 0.925
38 DBG 0.640351 0.974359
39 G3D 0.638298 0.960526
40 G4P 0.625 0.960526
41 GMP 0.621951 0.857143
42 NGD 0.62037 0.936709
43 GGM 0.618182 0.925926
44 0O2 0.616162 0.960526
45 2MD 0.603604 0.870588
46 CAG 0.60177 0.904762
47 U2G 0.590909 0.91358
48 FEG 0.590909 0.858824
49 GDP 7MG 0.590476 0.888889
50 MGD 0.587719 0.870588
51 G G 0.586538 0.924051
52 ZGP 0.585586 0.848837
53 CG2 0.580357 0.91358
54 ANP 0.568421 0.922078
55 PGD 0.567797 0.902439
56 MD1 0.567797 0.870588
57 3GP 0.56044 0.922078
58 TPG 0.558333 0.822222
59 GH3 0.55 0.948052
60 FE9 0.546219 0.778947
61 GPX 0.539216 0.922078
62 G4M 0.539062 0.860465
63 DGI 0.536082 0.9
64 BGO 0.535088 0.901235
65 IDP 0.53125 0.947368
66 DGT 0.53 0.9
67 2GP 0.526882 0.935065
68 G1R G1R 0.520325 0.901235
69 GCP G 0.518868 0.897436
70 A G 0.516949 0.911392
71 U A G G 0.512605 0.911392
72 G A A A 0.504202 0.9
73 AGO 0.504202 0.91358
74 P2G 0.5 0.860759
75 G1G 0.5 0.902439
76 R7I 0.49505 0.922078
77 MGP 0.49505 0.936709
78 R5I 0.49505 0.922078
79 PGD O 0.492063 0.831461
80 6G0 0.490196 0.936709
81 P1G 0.489796 0.85
82 AKW 0.483051 0.869048
83 DG 0.474227 0.8875
84 DGP 0.474227 0.8875
85 G U 0.466667 0.878049
86 IMP 0.463918 0.934211
87 G2Q 0.462963 0.936709
88 GPC 0.459677 0.858824
89 G C 0.459016 0.878049
90 GTA 0.448276 0.91358
91 G7M 0.444444 0.924051
92 MAP 0.439252 0.898734
93 G G G RPC 0.435484 0.853659
94 B4P 0.434343 0.871795
95 AP5 0.434343 0.871795
96 ADP 0.434343 0.896104
97 A2D 0.43299 0.871795
98 AT4 0.43 0.8625
99 G G G C 0.426357 0.890244
100 AU1 0.425743 0.922078
101 SGP 0.425743 0.807229
102 BA3 0.424242 0.871795
103 A G C C 0.423077 0.888889
104 35G 0.423077 0.909091
105 PCG 0.423077 0.909091
106 C2E 0.423077 0.897436
107 APC G U 0.421875 0.864198
108 HEJ 0.421569 0.896104
109 ATP 0.421569 0.896104
110 ACQ 0.419048 0.873418
111 5GP 5GP 0.419048 0.860759
112 5FA 0.417476 0.896104
113 AQP 0.417476 0.896104
114 01G 0.417391 0.880952
115 AN2 0.415842 0.909091
116 UNP 0.415842 0.810127
117 6AD 0.415094 0.821429
118 M33 0.411765 0.860759
119 ITT 0.411765 0.846154
120 G C C C 0.410448 0.901235
121 HFD 0.409524 0.851852
122 G U34 0.408 0.86747
123 ACP 0.407767 0.873418
124 6YZ 0.407407 0.873418
125 AR6 0.403846 0.871795
126 APR 0.403846 0.871795
127 DG DG 0.403509 0.845238
128 A4P 0.403226 0.848837
129 UCG 0.402985 0.888889
130 SAP 0.4 0.851852
131 AGS 0.4 0.851852
132 AD9 0.4 0.873418
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4M9Q; Ligand: GNP; Similar sites found with APoc: 669
This union binding pocket(no: 1) in the query (biounit: 4m9q.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 2Y8E GNP None
2 1YZQ GNP None
3 4DKX GDP None
4 1GXU 2HP None
5 3GUZ PAF 1.70455
6 4JLV ADP 1.76211
7 1G6O ADP 1.76211
8 3BFV ADP 1.76211
9 4NE2 SH2 1.76211
10 4NE2 ADP 1.76211
11 4BFW ZVW 1.76211
12 1CR1 TTP 1.76211
13 4NZ6 DGL 1.76211
14 1D2E GDP 2.20264
15 4IEE AGS 2.20264
16 4KBF AMP 2.20264
17 4GOX A3P 2.20264
18 1D2N ANP 2.20264
19 5H4S RAM 2.20264
20 2CHG ANP 2.21239
21 3AB4 THR 2.24719
22 1O8B ABF 2.28311
23 4IDN GNP 2.407
24 1G3Q ADP 2.53165
25 1BG2 ADP 2.64317
26 5W7Q GDP 2.64317
27 5GOE GDP 2.64317
28 1IWE IMP 2.64317
29 3FWY ADP 2.64317
30 4FCW ADP 2.64317
31 3QXC ATP 2.64317
32 3RC3 ANP 2.64317
33 1I0B PEL 2.64317
34 3EWA ANP 2.64317
35 3BER AMP 2.64317
36 2NCD ADP 2.64317
37 6AR9 3L4 2.64317
38 1NST A3P 2.64317
39 2D3N GLC GLC GLC 2.64317
40 3BFX A3P 2.64317
41 6A6A DAL 2.66667
42 2QQ0 ADP 2.71739
43 2QQ0 TMP 2.71739
44 2QQ0 ANP 2.71739
45 2QQ0 THM 2.71739
46 4M7V RAR 2.85714
47 4M7V NAP 2.85714
48 1Z83 AP5 3.06122
49 5W76 GDP 3.0837
50 2C78 GNP 3.0837
51 2C77 GNP 3.0837
52 2OG2 MLI 3.0837
53 3E70 GDP 3.0837
54 1XKV ATP 3.0837
55 1U0J ADP 3.0837
56 3EZ2 ADP 3.0837
57 4Q1A 2XZ 3.0837
58 4Q1A UDP 3.0837
59 1NJF ADP 3.0837
60 1VKJ A3P 3.0837
61 1NJF AGS 3.0837
62 2GK6 ADP 3.0837
63 1OS1 PYR 3.0837
64 1OS1 ATP 3.0837
65 3FYH ADP 3.0837
66 1T5C ADP 3.0837
67 2XAU ADP 3.0837
68 3FIU POP 3.0837
69 1DAK DPU 3.125
70 1DAK ADP 3.125
71 2J0V GDP 3.30189
72 3KTA AP5 3.46821
73 1XEX ATP 3.48837
74 2FFQ GSP 3.52423
75 4RD0 GDP 3.52423
76 5W75 GDP 3.52423
77 3WYA GDP 3.52423
78 2OBM ADP 3.52423
79 3TBK ANP 3.52423
80 2ZFI ADP 3.52423
81 4PFO ADP 3.52423
82 1P72 ADP 3.52423
83 1UJ2 ADP 3.52423
84 1UJ2 C5P 3.52423
85 1ION ADP 3.52423
86 2O0J ADP 3.52423
87 4FRZ ADP 3.52423
88 1G41 ADP 3.52423
89 2GDJ ANP 3.52423
90 4NFE BEN 3.52423
91 3QVV A3P 3.52423
92 4V36 LYN 3.52423
93 1NHX PEP 3.52423
94 1NHX FTB 3.52423
95 2GMV UN8 3.52423
96 2GMV PEP 3.52423
97 1BO4 COA 3.57143
98 3LN9 FLC 3.59712
99 1I4D GDP 3.64583
100 1G4U GDP 3.80435
101 1G4U AF3 3.80435
102 2NV2 GLN 3.92157
103 2FJU GSP 3.93258
104 2W58 ADP 3.9604
105 4LPS GDP 3.96476
106 3COB ADP 3.96476
107 5ZBR ANP 3.96476
108 4XGU ADP 3.96476
109 3KJI ADP 3.96476
110 2WOJ ADP ALF 3.96476
111 4YJ1 ADP 3.96476
112 2IS6 ADP 3.96476
113 4XTR ATP 3.96476
114 4XVU ATP 3.96476
115 5J1J ANP 3.96476
116 4XTR ADP 3.96476
117 4IOK XPO 3.96476
118 1YTM ATP 3.96476
119 4IOK ADP 3.96476
120 3P4X ADP 3.96476
121 3BOS CDP 3.96476
122 2ZTS ADP 3.96476
123 4YS0 ADP 3.96476
124 1TL2 NDG 3.96476
125 1W5T ANP 3.96476
126 5G3Y ADP 3.9823
127 3UIE ANP 4
128 2A9K GDP 4.03587
129 1U8Z GDP 4.16667
130 3H86 AP5 4.16667
131 1XX6 ADP 4.18848
132 2YOH WMJ 4.28571
133 5JCP GDP ALF 4.40529
134 4H1V GNP 4.40529
135 5L3V GDP 4.40529
136 4IHQ ADP 4.40529
137 1B7T ADP 4.40529
138 1KK8 BEF ADP 4.40529
139 5N69 ADP 4.40529
140 3IO3 ADP 4.40529
141 1IN4 ADP 4.40529
142 5UIV ADP 4.40529
143 1GOJ ADP 4.40529
144 4R43 GDP 4.40529
145 2ZUX RAM 4.40529
146 2FAH GDP 4.40529
147 1T8U UAP SGN IDS SGN 4.40529
148 5XDR ADP 4.40529
149 5DRB 5FJ 4.40529
150 3HQP FDP 4.40529
151 1UH4 GLC GLC GLC GLC GLC 4.40529
152 1UKZ ADP 4.4335
153 3IIJ ADP 4.44444
154 5G41 AP5 4.4843
155 4NU0 AP5 4.60829
156 1ZIN AP5 4.60829
157 4MKG AP5 4.60829
158 4MKF AP5 4.60829
159 1W4R TTP 4.61538
160 3FB4 AP5 4.62963
161 1YRB GDP 4.84582
162 1G7C 5GP 4.84582
163 3ZQ6 ADP ALF 4.84582
164 4LYA ATP 4.84582
165 5Y6N ADP 4.84582
166 1P9B GDP 4.84582
167 4A4Z ANP 4.84582
168 6CS8 F9Y 4.84582
169 1Z6T ADP 4.84582
170 3TMK T5A 4.84582
171 6ACS CIT 4.84582
172 1SVM ATP 4.84582
173 3FVQ ATP 4.84582
174 5NM7 GLY 4.84582
175 3RLF ANP 4.84582
176 5VHC BEF ADP 4.84582
177 1OXV ANP 4.84582
178 5NGZ 2BG 4.84582
179 5VGR GDP 4.84582
180 5ZXD ATP 4.84582
181 1G8S MET 4.84582
182 2AWN ADP 4.84582
183 1P9B HDA 4.84582
184 2X7I CIT 4.84582
185 4GN8 ASO 4.84582
186 1JJV ATP 4.85437
187 1A0J BEN 4.93274
188 1D5C GDP 4.93827
189 2GCO GNP 4.97512
190 2GCN GDP 4.97512
191 3U6B GDP 5.07614
192 5JBQ GDP 5.07614
193 4G5G GDP 5.07614
194 3U6K GDP 5.07614
195 2BVN GNP 5.08906
196 1D8T GDP 5.08906
197 1NN5 ANP 5.11628
198 1NN5 2DT 5.11628
199 2XTN GTP 5.12821
200 4DN8 BMA 5.12821
201 1OW3 GDP 5.18135
202 3H4S ADP 5.18518
203 4CVN ADP 5.2356
204 3B9Q MLI 5.28634
205 5I0H ADP BEF 5.28634
206 5TSH ANP 5.28634
207 5TSH ADP 5.28634
208 5L3R GCP 5.28634
209 1XMV ADP 5.28634
210 1LVK MNT BEF 5.28634
211 4WEI GLC GAL 5.28634
212 5WC2 ADP 5.28634
213 2FNA ADP 5.28634
214 2QEN ADP 5.28634
215 4LJ9 ACP 5.28634
216 3Q9L ATP 5.28634
217 5I34 GDP 5.28634
218 6B4K ANP 5.28634
219 1FNN ADP 5.28634
220 5Z69 AGS 5.28634
221 5EXT ADP 5.28634
222 3R7F CP 5.28634
223 3TW1 AHN 5.28634
224 2WGV CIT 5.28634
225 1GWN GTP 5.36585
226 5HPY GDP 5.40541
227 3LXR GDP 5.40541
228 1KMQ GNP 5.43478
229 1AKY AP5 5.45455
230 4P3Y GDP 5.49451
231 4XOI GTP 5.55556
232 5ZB0 TYD 5.55556
233 5ZB0 ADP 5.55556
234 1Z0F GDP 5.58659
235 1TX4 ALF GDP 5.64972
236 3KIF GDL 5.66038
237 1QF9 ADP 5.6701
238 1QF9 ALF 5.6701
239 1QF9 C5P 5.6701
240 4ZKD GDP 5.72687
241 4U00 ADP 5.72687
242 5U32 GDP 5.72687
243 2ZR9 DTP 5.72687
244 5LB3 ADP 5.72687
245 4OHY ANP 5.72687
246 2FSH ANP 5.72687
247 5LTJ BEF 5.72687
248 4D81 ADP 5.72687
249 5MZN ADP 5.72687
250 5IRN ADP 5.72687
251 4O48 ASP 5.72687
252 4PPF FLC 5.72687
253 1XP8 AGS 5.72687
254 3NHB ADP 5.72687
255 5LTJ ADP 5.72687
256 3N29 GOL 5.72687
257 5TIV A3P 5.72687
258 5W6Y TRP 5.72687
259 1QHH ATP 5.91716
260 1ZUI SKM 5.95238
261 1VHT BA3 5.9633
262 2CDN ADP 5.97015
263 1M7B GTP 5.97826
264 1PTR PRB 6
265 4TMK T5A 6.10329
266 3TK1 GDP 6.1674
267 1E2K TMC 6.1674
268 2JLR ANP 6.1674
269 3IUY AMP 6.1674
270 3DZD ADP 6.1674
271 3CV2 OXL 6.1674
272 2ZE7 DST 6.1674
273 2ZE7 AMP 6.1674
274 4PVR ASP 6.1674
275 4U5X GNP 6.17978
276 4QM7 GTP 6.43275
277 2W2X GSP 6.45161
278 2QN6 GDP 6.45161
279 2ZEJ GDP 6.52174
280 4UXH T5A 6.52174
281 4PU6 ASP 6.59898
282 4PC3 GDP 6.60793
283 1MKY GDP 6.60793
284 2RCN GDP 6.60793
285 3MD0 GDP 6.60793
286 4AG5 ADP 6.60793
287 4ZG4 VO4 ADP 6.60793
288 5GVR LMR 6.60793
289 1F5N GNP 6.60793
290 1H65 GDP 6.60793
291 3B7G ANP 6.60793
292 3A4M ADP 6.60793
293 2RGX AP5 6.60793
294 6B8B ADP 6.60793
295 6FAA ADP 6.60793
296 4HSE ADP 6.60793
297 4PJ3 ANP 6.60793
298 2VWT PYR 6.60793
299 1LK7 DER 6.60793
300 5AHO TLA 6.60793
301 2ZJ5 ADP 6.60793
302 6C90 ADP 6.60793
303 4PX9 ADP 6.60793
304 2HF9 GSP 6.63717
305 1Z0A GDP 6.89655
306 1HTW ADP 6.96203
307 5FG3 GDP 7.04846
308 4DCT GDP 7.04846
309 1PUJ GNP 7.04846
310 6G14 G4P 7.04846
311 4NON GDP 7.04846
312 2A5J GDP 7.04846
313 2PZE ATP 7.04846
314 1V8K ANP 7.04846
315 3T34 GDP 7.04846
316 2D2F ADP 7.04846
317 2B8W ALF 5GP 7.04846
318 1QF5 GDP 7.04846
319 1QF5 RPL 7.04846
320 2DPY ADP 7.04846
321 1R0X ATP 7.04846
322 2BIF ANP 7.04846
323 2BIF SIN 7.04846
324 5K5Z ANP 7.04846
325 2D7D ADP 7.04846
326 3FKQ ATP 7.04846
327 1OYY AGS 7.04846
328 1G6H ADP 7.04846
329 4WZ6 ATP 7.04846
330 4KFU ACP 7.07547
331 1KO8 6PG 7.42857
332 6AIC AMP 7.47664
333 1G7S GDP 7.48899
334 2XT3 ADP 7.48899
335 3CNL GNP 7.48899
336 4LC1 GDP 7.48899
337 3B5J 12D 7.48899
338 3DC4 ADP 7.48899
339 1K6M AGS 7.48899
340 1JJ7 ADP 7.48899
341 4TL6 ANP 7.48899
342 4ZDJ UTP 7.48899
343 4HI0 GDP 7.53769
344 2QG6 NMN 7.53769
345 5TP0 BRN 7.58929
346 4QRH 0O2 7.61905
347 4ZNL BEF ADP 7.66423
348 1S3G AP5 7.8341
349 4TTQ ATP 7.90698
350 2WIC GNP 7.92952
351 5HCN GCP 7.92952
352 4WZA ACP 7.92952
353 4WZA ADP 7.92952
354 1FP6 ADP 7.92952
355 4V03 ADP 7.92952
356 1JI0 ATP 7.92952
357 1SQ5 ADP 7.92952
358 2OZE AGS 7.92952
359 1NY5 ADP 7.92952
360 1Y63 ADP 8.15217
361 4XSH GSP 8.21918
362 2WKQ GTP 8.37004
363 4R98 GNH 8.37004
364 5FTB ANP 8.37004
365 5X40 ACP 8.37004
366 5FHD ADP ALF 8.37004
367 2CBZ ATP 8.37004
368 5H68 AGS 8.37004
369 1B0U ATP 8.39695
370 2WJG GDP 8.51064
371 1L2T ATP 8.51064
372 1W7J ADP BEF 8.60927
373 5MVR ADP 8.64198
374 2VB6 ADP BEF 8.72483
375 1DAR GDP 8.81057
376 2ZPA ADP 8.81057
377 5E5U MLI 8.81057
378 4Y4V DAL 8.81057
379 1ZOY UQ1 8.81057
380 6DEF GCP 8.95141
381 1M7G AV2 9.00474
382 1M7G ADP 9.00474
383 1M7G ADX 9.00474
384 5LEF GTP 9.09091
385 1UAD GNP 9.09091
386 5HR5 ADP 9.22787
387 5IRR GSP 9.2511
388 3DKP ADP 9.2511
389 2GKS ADP 9.2511
390 2Q2Y ADP 9.2511
391 2Q2Y MKR 9.2511
392 2BEK ATP 9.2511
393 3LRE ADP 9.2511
394 4YMU ATP 9.2511
395 1YQT ADP 9.2511
396 6H5E ANP 9.2511
397 2PL3 ADP 9.2511
398 2WJH GDP 9.63855
399 2WJH FLC 9.63855
400 4BQS K2Q 9.65909
401 4BQS ADP 9.65909
402 2WHX ADP 9.69163
403 1IHU AF3 9.69163
404 1IHU ADP 9.69163
405 1RRC ADP 9.69163
406 4IV9 FAD 9.69163
407 1ZC3 GNP 9.73451
408 5WDR GNP 9.94152
409 4R2I ANP 10
410 2Y65 ADP 10.1322
411 1RJ9 GCP 10.1322
412 2IYL GDP 10.1322
413 1X6V ADP 10.1322
414 4RZ3 ADP 10.1322
415 1F9V ADP 10.1322
416 5DT6 GLU 10.1322
417 3BD9 A3P 10.1322
418 2HK9 ATR 10.1322
419 1SVI GDP 10.2564
420 5OEC GDP 10.3825
421 1DS6 GDP 10.4167
422 5XKT GNP 10.5
423 1WDT GTP 10.5727
424 4YDS ATP 10.5727
425 1LVG ADP 10.6061
426 3Q85 GNP 10.6509
427 4WOP CTP 10.6667
428 2KIN ADP 11
429 1W0J ADP 11.0132
430 2CK3 ANP 11.0132
431 5J1S ATP 11.0132
432 1W0J ADP BEF 11.0132
433 2CK3 ADP 11.0132
434 2OFW ADX 11.0577
435 2IXE ATP 11.4537
436 3ITJ CIT 11.4537
437 3QF7 ANP 12
438 4J0Q GDP 12.3348
439 4LIK CIT 12.3348
440 6A20 ADP 12.3348
441 1OFH ADP 12.6437
442 3VMF GTP 12.7753
443 3WXM GTP 12.7753
444 2PEZ GGZ 12.8492
445 2PEZ DAT 12.8492
446 1SKQ GDP 13.2159
447 3ZFD ANP 13.2159
448 2QZ4 ADP 13.2159
449 2ORV 4TA 13.2159
450 4QOS ADP 13.2159
451 3RAB GNP 13.6095
452 2XTZ GSP 13.6564
453 6BCB GSP 13.6986
454 4E03 ADP 14.0777
455 5IFS ADP 14.0969
456 3HU3 AGS 14.0969
457 3W5J GDP 14.2157
458 3REF GDP 14.433
459 4D0G GTP 14.4928
460 4NCN GTP 14.5374
461 4TMZ GSP 14.5374
462 5L3S GNP 14.978
463 5L3W GDP 14.978
464 5L3S G 14.978
465 4KVA GTP 15.0485
466 1X1R GDP 15.1685
467 6BC0 GSP 15.3333
468 3EC1 GDP 15.4185
469 4P4T GDP 15.4185
470 2CE7 ADP 15.4185
471 1VMK GUN 15.5235
472 5AOG IAC 15.859
473 2HCJ GDP 16.2162
474 5BN3 ADP 16.2996
475 5H7J GCP 16.7401
476 5H7K GDP 16.7401
477 5CK5 GDP 17.1806
478 1GOT GDP 17.6211
479 1FQJ ALF 18.0617
480 1FQK GDP 18.0617
481 1FQJ GDP 18.0617
482 1FQK ALF 18.0617
483 3QKT ANP 18.0617
484 4DID GDP 18.1347
485 1A4R GDP 18.3246
486 1A4R GNH 18.3246
487 1GRN AF3 18.3246
488 1GRN GDP 18.3246
489 4ITR GDP 18.3246
490 2NGR GDP 18.3246
491 2NGR AF3 18.3246
492 2WMO GTP 18.4211
493 3ZS9 ADP ALF 18.4211
494 1NF3 GNP 18.4615
495 2ODE ALF GDP 18.5022
496 1BH2 GSP 18.5022
497 2VVG ADP 18.5022
498 1Y3A GDP 18.5022
499 6CRK GDP 18.5022
500 1GP2 GDP 18.5022
501 5KDO GDP 18.5022
502 5UPK GNP 18.9189
503 1CS4 GSP 18.9427
504 6AU6 GDP 18.9427
505 1SVK ALF GDP 18.9427
506 2J5V PCA 18.9427
507 4X8O AP5 19.1589
508 4YC7 GNP 19.337
509 2C9O ADP 19.3833
510 2BCG GDP 19.4175
511 1CXZ GSP 19.7674
512 3A1S GDP 20.155
513 5UWP GNP 20.2643
514 5DIF GNP 20.2643
515 5UWW GNP 20.2643
516 5UWU GNP 20.2643
517 5UWO GNP 20.2643
518 5UWI GNP 20.2643
519 6CIT GNP 20.2643
520 5UWT GNP 20.2643
521 5UWH GNP 20.2643
522 5DHF GNP 20.2643
523 5UWS GNP 20.2643
524 5UWJ GNP 20.2643
525 5DI9 GNP 20.2643
526 3ZIA ATP 20.6349
527 3ZIA ADP 20.6349
528 3GJ5 GDP 20.8145
529 3GJ7 GDP 20.8145
530 3GJ8 GDP 20.8145
531 3GJ3 GDP 20.8145
532 3GJ0 GDP 20.8145
533 3WYF GTP 21.0046
534 3M1I GTP 21.0046
535 3GJ4 GDP 21.2121
536 5H67 ATP 21.25
537 5BXQ GDP 21.2963
538 4HAT GNP 21.2963
539 1IBR GNP 21.2963
540 3GJX GTP 21.2963
541 3CH5 GDP 21.2963
542 1TAD ALF 21.5859
543 1TAD GDP 21.5859
544 1YZN GNP 21.6216
545 3CX8 GSP 22.0264
546 3AB3 GDP 22.0264
547 1ZCB GDP 22.0264
548 5BQ5 ADP BEF 22.2222
549 5M7P ADP 22.467
550 6BCA GSP 22.5166
551 5KSZ GCP 22.9075
552 5AK0 8V1 23.348
553 3CPJ GDP 23.7668
554 1WF3 GNP 24.2291
555 5IRC GDP 24.2291
556 4OI4 ATP 24.3478
557 3VX3 ADP 24.6696
558 2OM2 GDP 25
559 3WYG GTP 25.2747
560 2EW1 GNP 25.3731
561 5UQW GDP 25.3968
562 3RWO GDP 25.4054
563 2CJW GDP 25.5208
564 1R6B ADP 25.5507
565 3QBT GNP 25.8621
566 3TNF GNP 25.8621
567 4LHW GNP 25.8621
568 5TB5 GDP 25.9459
569 5TAR GDP 25.9459
570 1WA5 GTP 26.1364
571 1OIX GDP 26.178
572 1OIV GDP 26.178
573 4KVG GTP 26.7857
574 4K81 GTP 26.9006
575 2VOH CIT 26.9231
576 1LFD GNP 26.9461
577 5OCG GNP 26.9841
578 1NRJ GTP 27.0642
579 2G77 GDP 27.2727
580 2G77 AF3 27.2727
581 5KSP GDP 27.3684
582 5E95 GDP 27.381
583 1KAO GDP 27.5449
584 1F2U ATP 27.7027
585 2UZI GTP 27.7108
586 1NVV GNP 27.7108
587 3KUD GDP 27.7108
588 1WQ1 GDP 27.7108
589 1WQ1 AF3 27.7108
590 5JCZ GDP 27.933
591 3PQC GDP 28.2051
592 4LX0 BEF GDP 28.2486
593 5O2T GSP 28.4024
594 1VG8 GNP 28.5024
595 1VG0 GDP 28.5024
596 1Z06 GNP 28.5714
597 5M04 GDP 28.6344
598 1TQ4 GDP 28.6344
599 1TU3 GNP 28.655
600 3T5G GDP 28.7293
601 2EFE GNH 28.7293
602 2HT6 GDP 28.7356
603 6D5E GNP 28.7425
604 6BVJ GNP 28.7425
605 6D5H GNP 28.7425
606 6D55 GNP 28.7425
607 6BVI GNP 28.7425
608 6BVL GNP 28.7425
609 6D5J GNP 28.7425
610 6BVK GNP 28.7425
611 6D56 GNP 28.7425
612 6D59 GNP 28.7425
613 6D5G GNP 28.7425
614 6D5V GNP 28.7425
615 6D5L GNP 28.7425
616 6BVM GNP 28.7425
617 6D5M GNP 28.7425
618 1Z0J GTP 28.8235
619 6FA4 GNP 28.9017
620 5WLB GNP 28.9157
621 1YVD GNP 28.9941
622 2HV8 GTP 29.0698
623 6BSX GDP 29.2135
624 6BSX E7S 29.2135
625 1EK0 GNP 29.4118
626 1R2Q GNP 29.4118
627 1Z08 GNP 29.4118
628 5XC5 GTP 29.5455
629 5SZH GNP 29.5567
630 3E5H GNP 29.7753
631 2D7C GTP 29.9401
632 1E96 GTP 30.2083
633 3SBD GNP 30.4813
634 4HDQ GNP 30.5389
635 3X1Z GNP 30.5389
636 3TKL GTP 30.6122
637 1GUA GNP 31.1377
638 1MH1 GNP 31.1828
639 5KUT GDP 31.2169
640 1VG1 GDP 32.4324
641 1VG9 GDP 32.4324
642 3SFV GDP 32.5967
643 1S8F GDP 32.7684
644 1HE1 GDP 32.9545
645 1HE1 AF3 32.9545
646 4B47 GDP 33.0396
647 2FH5 GTP 33.1776
648 5O74 GDP 33.3333
649 5UWR GNP 33.3333
650 2V7Q ADP 33.3333
651 2V7Q ATP 33.3333
652 1Z0K GTP 33.7209
653 1Z2A GDP 33.9286
654 5Z2M GTP 34.0909
655 3NKV GNP 34.2857
656 1KY3 GDP 34.6154
657 1KK1 GNP 36.1233
658 1G16 GDP 37.0588
659 5YV5 ADP 38.8889
660 2GJ8 ALF GDP 40.1163
661 5UWQ GNP 40.9091
662 1F6B GDP 40.9091
663 1M2O GNP 41.5789
664 5YT0 GDP 42.8571
665 1ZD9 GDP 43.0851
666 1ZJ6 G3D 43.8503
667 1YZG GDP 46.3687
668 2QTV GNP 47.3054
669 3AQ4 GDP 49.4565
Pocket No.: 2; Query (leader) PDB : 4M9Q; Ligand: GNP; Similar sites found with APoc: 6
This union binding pocket(no: 2) in the query (biounit: 4m9q.bio3) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 1P4V GLY 1.76211
2 5W75 SUC 3.52423
3 2F5X ASP 4.84582
4 1Z0N BCD 5.20833
5 1WRA PC 6.60793
6 1APZ ASP 12.3457
Pocket No.: 3; Query (leader) PDB : 4M9Q; Ligand: GNP; Similar sites found with APoc: 5
This union binding pocket(no: 3) in the query (biounit: 4m9q.bio2) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 3VPD CIT 1.32159
2 3B8Y ADA ADA ADA ADA 1.76211
3 1J1R ADE 3.52423
4 1W5T ADP 3.96476
5 3KP6 SAL 15.2318
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