Receptor
PDB id Resolution Class Description Source Keywords
4LX0 2.19 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF MYO5B GLOBULAR TAIL DOMAIN IN COMPLEX W RAB11A HOMO SAPIENS DIL PROTEIN TRANSPORT-CONTRACTILE PROTEIN COMPLEX
Ref.: STRUCTURAL BASIS OF MYOSIN V RAB GTPASE-DEPENDENT C RECOGNITION. PROC.NATL.ACAD.SCI.USA V. 110 20443 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BEF GDP C:202;
A:202;
Valid;
Valid;
none;
none;
submit data n/a n/a n/a n/a
MG A:201;
C:201;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
GOL A:204;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4LX0 2.19 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF MYO5B GLOBULAR TAIL DOMAIN IN COMPLEX W RAB11A HOMO SAPIENS DIL PROTEIN TRANSPORT-CONTRACTILE PROTEIN COMPLEX
Ref.: STRUCTURAL BASIS OF MYOSIN V RAB GTPASE-DEPENDENT C RECOGNITION. PROC.NATL.ACAD.SCI.USA V. 110 20443 2013
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 4LX0 - BEF GDP n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 5JCZ - GDP BEF n/a n/a
2 4LX0 - BEF GDP n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 5JCZ - GDP BEF n/a n/a
2 4LX0 - BEF GDP n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BEF GDP; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4LX0; Ligand: BEF GDP; Similar sites found with APoc: 53
This union binding pocket(no: 1) in the query (biounit: 4lx0.bio2) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 4RD0 GDP 6.21469
2 4NCN GTP 6.77966
3 4DCT GDP 7.49415
4 2FH5 GTP 9.81308
5 1SKQ GDP 17.5141
6 1KK1 GNP 22.0339
7 4M9Q GNP 28.2486
8 1KSH GDP 31.0734
9 2A5F GTP 31.4286
10 1J2J GTP 32.5301
11 5UPK GNP 34.4633
12 1NF3 GNP 34.4633
13 1GRN GDP 35.0282
14 1GRN AF3 35.0282
15 1R4A GNP 42.4242
16 2W2X GSP 45.1977
17 1E96 GTP 45.7627
18 6BSX E7S 45.7627
19 6BSX GDP 45.7627
20 4HAT GNP 46.3277
21 1IBR GNP 46.3277
22 3M1I GTP 46.3277
23 5BXQ GDP 46.3277
24 3GJ7 GDP 46.3277
25 3GJ5 GDP 46.3277
26 1KMQ GNP 46.3277
27 2FJU GSP 46.3277
28 3SBD GNP 46.8927
29 1MH1 GNP 46.8927
30 2WKQ GTP 46.8927
31 1TX4 ALF GDP 46.8927
32 1WA5 GTP 47.1591
33 1CXZ GSP 47.4576
34 5DIF GNP 48.0226
35 5UWJ GNP 48.0226
36 5UWW GNP 48.0226
37 5UWP GNP 48.0226
38 5UWQ GNP 48.0226
39 5UWI GNP 48.0226
40 6CIT GNP 48.0226
41 5UWR GNP 48.0226
42 5UWO GNP 48.0226
43 5UWT GNP 48.0226
44 5UWS GNP 48.0226
45 5UWU GNP 48.0226
46 5DHF GNP 48.0226
47 5UWH GNP 48.0226
48 2GCO GNP 48.0226
49 5DI9 GNP 48.0226
50 1M7B GTP 48.0226
51 5UQW GDP 48.6772
52 1GWN GTP 49.1525
53 1X1R GDP 49.4382
APoc FAQ
Feedback