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Receptor
PDB id Resolution Class Description Source Keywords
4K81 2.4 Å NON-ENZYME: SIGNAL_HORMONE CRYSTAL STRUCTURE OF THE GRB14 RA AND PH DOMAINS IN COMPLEX LOADED H-RAS HOMO SAPIENS ADAPTOR PROTEIN SIGNALING PROTEIN
Ref.: STRUCTURAL BASIS FOR THE INTERACTION OF THE ADAPTOR GRB14 WITH ACTIVATED RAS. PLOS ONE V. 8 72473 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:404;
A:401;
E:400;
A:403;
B:201;
A:402;
C:400;
E:401;
C:401;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
GTP H:200;
D:200;
F:200;
B:202;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
523.18 C10 H16 N5 O14 P3 c1nc2...
MG D:201;
H:201;
B:203;
F:201;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4K81 2.4 Å NON-ENZYME: SIGNAL_HORMONE CRYSTAL STRUCTURE OF THE GRB14 RA AND PH DOMAINS IN COMPLEX LOADED H-RAS HOMO SAPIENS ADAPTOR PROTEIN SIGNALING PROTEIN
Ref.: STRUCTURAL BASIS FOR THE INTERACTION OF THE ADAPTOR GRB14 WITH ACTIVATED RAS. PLOS ONE V. 8 72473 2013
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 286 families.
1 4K81 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
70% Homology Family (34)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 250 families.
1 5WFO - 5UU C19 H16 Cl F N2 c1cc(ccc1N....
2 6FA3 Kd = 0.038 uM D1Z C30 H36 N4 O5 CN(C)Cc1cc....
3 5WFQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
4 5O2T Kd = 3.9 nM GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
5 5WPM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
6 5WFR - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
7 5UFQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 6AMB - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
9 6FA1 - D2Z C20 H25 N2 O4 C[NH+](C)C....
10 5UFE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
11 5WFP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
12 5WHB - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
13 5WPL - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
14 5XCO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
15 1NVU - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
16 5WHE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
17 3KUC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
18 1C1Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
19 5TAR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
20 4DXA - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
21 4HDO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
22 5E95 Kd = 15.7 nM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
23 3CF6 - SP1 C10 H12 N5 O5 P S c1nc(c2c(n....
24 6FA4 Kd = 0.051 uM D1W C23 H25 N3 O3 CN(C)Cc1cc....
25 2C5L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
26 4K81 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
27 1LFD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
28 4KVG - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
29 1WQ1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
30 3DDC - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
31 3KUD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
32 4URZ Kd = 3 mM VJP C11 H14 N2 O3 S c1cc(ccc1N....
33 4URX Kd = 1.3 mM HXY C11 H14 Br N c1cc(ccc1C....
34 4URY Kd = 6 mM RV1 C10 H12 N2 O3 S c1cc(ccc1N....
50% Homology Family (47)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 204 families.
1 3QBT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
2 5WFO - 5UU C19 H16 Cl F N2 c1cc(ccc1N....
3 6FA3 Kd = 0.038 uM D1Z C30 H36 N4 O5 CN(C)Cc1cc....
4 5WFQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
5 5O2T Kd = 3.9 nM GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
6 5WPM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
7 5WFR - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 5UFQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
9 6AMB - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
10 6FA1 - D2Z C20 H25 N2 O4 C[NH+](C)C....
11 5UFE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
12 5WFP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
13 5WHB - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 5WPL - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
15 5XCO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
16 1NVU - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
17 5WHE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
18 3KUC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
19 1C1Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
20 5TAR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
21 4DXA - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
22 4HDO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
23 3MJH - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
24 5E95 Kd = 15.7 nM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
25 3CF6 - SP1 C10 H12 N5 O5 P S c1nc(c2c(n....
26 2CJW Kd = 2.5 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
27 6FA4 Kd = 0.051 uM D1W C23 H25 N3 O3 CN(C)Cc1cc....
28 2C5L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
29 4K81 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
30 1LFD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
31 4KVG - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
32 3TNF - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
33 1ZC4 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
34 1ZC3 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
35 2A9K - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
36 2A78 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
37 1WQ1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
38 3TKL - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
39 3DDC - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
40 3KUD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
41 1TU3 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
42 1UAD Ka = 7260000 M^-1 GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
43 5O74 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
44 3SFV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
45 4URZ Kd = 3 mM VJP C11 H14 N2 O3 S c1cc(ccc1N....
46 4URX Kd = 1.3 mM HXY C11 H14 Br N c1cc(ccc1C....
47 4URY Kd = 6 mM RV1 C10 H12 N2 O3 S c1cc(ccc1N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GTP; Similar ligands found: 156
No: Ligand ECFP6 Tc MDL keys Tc
1 GTP 1 1
2 GP3 0.921053 0.973684
3 GDP 0.909091 1
4 GSP 0.853659 0.948718
5 GNH 0.82716 0.986667
6 G1R 0.819277 0.986667
7 GAV 0.811765 0.961039
8 9GM 0.809524 0.973684
9 GNP 0.809524 0.973684
10 GCP 0.797619 0.973684
11 5GP 0.797468 0.986486
12 G 0.797468 0.986486
13 GMV 0.764706 0.973684
14 G2R 0.764045 0.961039
15 G5P 0.755319 0.973684
16 GTG 0.752688 0.936709
17 G2P 0.747126 0.961039
18 G3A 0.744681 0.973684
19 GDD 0.741935 0.961039
20 GDC 0.741935 0.961039
21 GKE 0.741935 0.961039
22 0O2 0.736264 0.986486
23 GP2 0.729412 0.961039
24 6CK 0.726316 0.936709
25 Y9Z 0.723404 0.902439
26 GPG 0.717391 0.961039
27 GFB 0.715789 0.961039
28 GDR 0.715789 0.961039
29 GPD 0.704082 0.925
30 GKD 0.693878 0.961039
31 JB2 0.693878 0.961039
32 GDX 0.686869 0.973684
33 ALF 5GP 0.685393 0.888889
34 GH3 0.681319 0.973333
35 YGP 0.677083 0.901235
36 G3D 0.67033 0.986486
37 GDP AF3 0.659574 0.888889
38 ALF GDP 0.659574 0.888889
39 GDP ALF 0.659574 0.888889
40 DGT 0.659341 0.923077
41 GMP 0.658228 0.88
42 G4P 0.655914 0.986486
43 JB3 0.653846 0.948718
44 NGD 0.647619 0.961039
45 CAG 0.642202 0.880952
46 2MD 0.62963 0.891566
47 MGP 0.619565 0.961039
48 U2G 0.616822 0.936709
49 6G0 0.612903 0.961039
50 MGD 0.612613 0.891566
51 TPG 0.608696 0.840909
52 CG2 0.605505 0.936709
53 GDP 7MG 0.601942 0.911392
54 FEG 0.601852 0.879518
55 G G 0.598039 0.948052
56 ZGP 0.59633 0.869048
57 PGD 0.591304 0.925
58 MD1 0.591304 0.891566
59 3GP 0.590909 0.946667
60 GPX 0.581633 0.946667
61 DGI 0.580645 0.923077
62 IDP 0.576087 0.972973
63 DBG 0.567797 0.948718
64 2GP 0.555556 0.96
65 FE9 0.555556 0.776596
66 G4M 0.547619 0.880952
67 BGO 0.544643 0.924051
68 GCP G 0.543689 0.921053
69 ATP 0.537634 0.92
70 HEJ 0.537634 0.92
71 G1G 0.533898 0.925
72 AQP 0.531915 0.92
73 5FA 0.531915 0.92
74 A G 0.525862 0.935065
75 G A A A 0.525862 0.923077
76 U A G G 0.521368 0.935065
77 HFD 0.520833 0.873418
78 R5I 0.520408 0.946667
79 R7I 0.520408 0.946667
80 01G 0.518868 0.902439
81 P2G 0.510638 0.883117
82 ITT 0.510638 0.868421
83 AKW 0.504348 0.890244
84 GGM 0.504274 0.901235
85 G1R G1R 0.504065 0.924051
86 DGP 0.5 0.910256
87 PGD O 0.5 0.850575
88 MGO 0.5 0.864198
89 DG 0.5 0.910256
90 P1G 0.5 0.871795
91 GTA 0.495495 0.936709
92 PRT 0.490741 0.959459
93 B4P 0.489362 0.894737
94 AP5 0.489362 0.894737
95 IMP 0.489362 0.959459
96 G U 0.487179 0.9
97 7DT 0.484536 0.906667
98 GPC 0.479339 0.879518
99 G C 0.478992 0.9
100 BA3 0.478723 0.894737
101 ADP 0.473684 0.92
102 G2Q 0.471698 0.961039
103 6YZ 0.470588 0.896104
104 G7M 0.46875 0.948052
105 C1Z 0.462963 0.986486
106 25L 0.458716 0.907895
107 A2D 0.457447 0.894737
108 RGT 0.45045 0.909091
109 AGS 0.45 0.873418
110 SAP 0.45 0.873418
111 SGP 0.44898 0.82716
112 A4P 0.445378 0.869048
113 G G G RPC 0.442623 0.875
114 ANP 0.441176 0.896104
115 ACQ 0.441176 0.896104
116 8GT 0.441176 0.875
117 APC G U 0.44 0.886076
118 AT4 0.438776 0.884615
119 G U34 0.438017 0.888889
120 6AD 0.436893 0.841463
121 G G G C 0.433071 0.9125
122 UP5 0.432203 0.873418
123 PCG 0.431373 0.933333
124 C2E 0.431373 0.921053
125 35G 0.431373 0.933333
126 A G C C 0.429688 0.911392
127 T99 0.427184 0.884615
128 5GP 5GP 0.427184 0.883117
129 TAT 0.427184 0.884615
130 AR6 0.425743 0.894737
131 APR 0.425743 0.894737
132 7DD 0.424242 0.906667
133 AN2 0.424242 0.907895
134 DG DG 0.423423 0.865854
135 AD9 0.421569 0.896104
136 M33 0.42 0.883117
137 7D4 0.42 0.835443
138 UCG 0.419847 0.911392
139 HDV 0.419048 0.825
140 H6Y 0.419048 0.946667
141 G C C C 0.416667 0.924051
142 ACP 0.415842 0.896104
143 T5A 0.414634 0.802326
144 A1R 0.412844 0.839506
145 ADQ 0.412844 0.871795
146 MGQ 0.412844 0.935897
147 A3R 0.412844 0.839506
148 MGT 0.411215 0.823529
149 A G U 0.410072 0.888889
150 93A 0.41 0.833333
151 A22 0.407407 0.907895
152 CA0 0.405941 0.896104
153 ATF 0.40566 0.884615
154 AGO 0.404762 0.888889
155 MGV 0.401786 0.890244
156 CGP 0.4 0.86747
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4K81; Ligand: GTP; Similar sites found with APoc: 595
This union binding pocket(no: 1) in the query (biounit: 4k81.bio4) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 1GXU 2HP None
2 1TE2 PGA 1.76991
3 2QZ4 ADP 1.93798
4 1NJF AGS 2
5 1NJF ADP 2
6 1R0X ATP 2.32558
7 1P72 ADP 2.32558
8 5EXT ADP 2.33918
9 2DT9 THR 2.39521
10 1UPT GTP 2.92398
11 1T8U A3P 2.92398
12 1T8U UAP SGN IDS SGN 2.92398
13 1XP8 AGS 3.10078
14 4YFY 1YJ 3.14961
15 1KO8 6PG 3.42857
16 4MZQ 1VU 3.47222
17 1G41 ADP 3.48837
18 4C2W ANP 3.48837
19 1TQ4 GDP 3.50877
20 1M7G ADX 3.50877
21 1M7G ADP 3.50877
22 4QRH 0O2 3.50877
23 4RLQ 3SK 3.50877
24 1M7G AV2 3.50877
25 5ZB0 ADP 3.53535
26 5ZB0 TYD 3.53535
27 1HTW ADP 3.79747
28 5HCN GCP 3.83142
29 1B0U ATP 3.87597
30 4GBM A3P 3.87597
31 3DKP ADP 4.08163
32 5O96 SAM 4.08163
33 2Y65 ADP 4.09357
34 1YXM ADE 4.09357
35 5HR5 ADP 4.09357
36 6EKZ SNP 4.09357
37 2IYL GDP 4.09357
38 1KJ8 GAR 4.09357
39 5UIV ADP 4.09357
40 2DC1 CIT 4.09357
41 2Z49 AMG 4.09357
42 1BO4 COA 4.16667
43 3H4S ADP 4.26357
44 4FRZ ADP 4.26357
45 2FSH ANP 4.26357
46 2O0J ADP 4.26357
47 3BIB PSF 4.31034
48 3N5C GDP 4.32099
49 1OE0 TTP 4.34783
50 2RGX AP5 4.36893
51 6A20 ADP 4.65116
52 5FTB ANP 4.65116
53 4Q1A UDP 4.65116
54 4Q1A 2XZ 4.65116
55 2ZFI ADP 4.65116
56 5FHD ADP ALF 4.65116
57 3COB ADP 4.67836
58 1JI0 ATP 4.67836
59 4JLV ADP 4.67836
60 5TSH ANP 4.67836
61 5TSH ADP 4.67836
62 4PX9 ADP 4.67836
63 5XDR ADP 4.67836
64 3B7G ANP 4.67836
65 4FCW ADP 4.67836
66 6GSG RCO 4.67836
67 3ITJ CIT 4.67836
68 4LJ9 ACP 4.67836
69 3DC4 ADP 4.67836
70 1X9I G6Q 4.67836
71 3BFV ADP 4.67836
72 5I34 GDP 4.67836
73 4ZNL BEF ADP 4.74453
74 5OCM 9RH 4.811
75 3IUY AMP 4.82456
76 4E03 ADP 4.85437
77 2JAQ DCP 4.87805
78 2J5V PCA 5.03876
79 1C3X 8IG 5.03876
80 4GOX A3P 5.03876
81 5XLS URA 5.03876
82 2VOH CIT 5.09554
83 1NU4 MLA 5.15464
84 1G6H ADP 5.26316
85 2KIN ADP 5.26316
86 1T5C ADP 5.26316
87 4YDS ATP 5.26316
88 5I0H ADP BEF 5.26316
89 4RUS NAG 5.26316
90 5K5Z ANP 5.26316
91 3Q9L ATP 5.26316
92 2BEK ATP 5.26316
93 5H68 AGS 5.26316
94 1P9B HDA 5.26316
95 5AHO TLA 5.26316
96 4RUS NDG 5.26316
97 2BO4 FLC 5.26316
98 2QG6 NMN 5.26316
99 3UIE ANP 5.26316
100 1P9B GDP 5.26316
101 4OWK NGA 5.26316
102 5BQ5 ADP BEF 5.29101
103 1YTM ATP 5.42636
104 1OS1 PYR 5.42636
105 1OS1 ATP 5.42636
106 1VHT BA3 5.50459
107 3IIJ ADP 5.55556
108 5EE5 GTP 5.6338
109 3KC1 2T6 5.81395
110 4RZ3 ADP 5.81395
111 2A5F GTP 5.84795
112 3NHB ADP 5.84795
113 2OBM ADP 5.84795
114 5LB3 ADP 5.84795
115 5Y6N ADP 5.84795
116 2B8W ALF 5GP 5.84795
117 3ZS9 ADP ALF 5.84795
118 4YJ1 ADP 5.84795
119 2WOJ ADP ALF 5.84795
120 3IO3 ADP 5.84795
121 3VM7 GLC 5.84795
122 2C9O ADP 5.84795
123 1WUU GLA 5.84795
124 1O8B ABF 5.84795
125 3FVQ ATP 5.84795
126 4XGU ADP 5.84795
127 3QKT ANP 5.84795
128 3G5S GSH 5.84795
129 3ENV ABF 5.84795
130 3THR C2F 5.84795
131 1M0S CIT 5.84795
132 4AP9 1PS 5.84795
133 3L6C MLI 5.8997
134 1W7J ADP BEF 5.96026
135 4IJ6 SEP 6.16114
136 3ZQ6 ADP ALF 6.20155
137 2Q2Y ADP 6.20155
138 2Q2Y MKR 6.20155
139 1W5T ANP 6.20155
140 1V0O INR 6.20155
141 2Z5F A3P 6.20155
142 1W5T ADP 6.20155
143 4HE2 AMP 6.21302
144 1OFH ADP 6.32184
145 5KUT GDP 6.34921
146 2PZE ATP 6.43275
147 4WZ6 ATP 6.43275
148 2BVN GNP 6.43275
149 1D8T GDP 6.43275
150 2HCJ GDP 6.43275
151 3U6B GDP 6.43275
152 5JBQ GDP 6.43275
153 4G5G GDP 6.43275
154 3U6K GDP 6.43275
155 4R43 GDP 6.43275
156 2ZPA ADP 6.43275
157 4QOS ADP 6.43275
158 4ZDJ UTP 6.43275
159 5NM7 GLY 6.43275
160 3RC3 ANP 6.43275
161 5WC2 ADP 6.43275
162 1E2K TMC 6.43275
163 2NZ5 226 6.43275
164 1QAN SAH 6.43275
165 2FAH GDP 6.43275
166 3NJQ NJQ 6.43275
167 3A4M ADP 6.43275
168 4JZ8 CIT 6.43275
169 3WYA GDP 6.45161
170 3WY9 GDP 6.45161
171 1KSH GDP 6.57895
172 5J1J ANP 6.58915
173 4BFW ZVW 6.58915
174 2CFI ZZZ 6.58915
175 2OZE AGS 6.58915
176 5VHC BEF ADP 6.58915
177 4WOP CTP 6.66667
178 2Q8M AMP 6.97674
179 1G5N UAP SGN IDS SGN 6.97674
180 5W75 GDP 7.01754
181 1GOJ ADP 7.01754
182 2C78 GNP 7.01754
183 2C77 GNP 7.01754
184 1WDT GTP 7.01754
185 5W7Q GDP 7.01754
186 4WZA ACP 7.01754
187 5W76 GDP 7.01754
188 4WZA ADP 7.01754
189 1KK1 GNP 7.01754
190 3CNL GNP 7.01754
191 3ZFD ANP 7.01754
192 2XAU ADP 7.01754
193 1QF5 GDP 7.01754
194 1QF5 RPL 7.01754
195 4OHY ANP 7.01754
196 1U0J ADP 7.01754
197 1FP6 ADP 7.01754
198 2X7I CIT 7.01754
199 2PEZ DAT 7.01754
200 2PEZ GGZ 7.01754
201 4PFO ADP 7.01754
202 4NE2 SH2 7.01754
203 4NE2 ADP 7.01754
204 1SQ5 ADP 7.01754
205 6B8B ADP 7.01754
206 5IRN ADP 7.01754
207 1U2Z SAH 7.01754
208 2WPB ZZI 7.01754
209 1Z83 AP5 7.01754
210 2YRX AMP 7.09534
211 2YOH WMJ 7.14286
212 6G47 SIA SIA 7.17703
213 3KIH GDL 7.2165
214 1L2T ATP 7.23404
215 4RD0 GDP 7.36434
216 4IHQ ADP 7.36434
217 1QHG ATP 7.36434
218 2VB6 ADP BEF 7.38255
219 1DAK DPU 7.58929
220 1DAK ADP 7.58929
221 3VMF GTP 7.60234
222 3WXM GTP 7.60234
223 1TAD GDP 7.60234
224 1TAD ALF 7.60234
225 1LVG ADP 7.60234
226 2XT3 ADP 7.60234
227 2WHX ADP 7.60234
228 1OXV ANP 7.60234
229 3TBK ANP 7.60234
230 5LTJ ADP 7.60234
231 2CE7 ADP 7.60234
232 2JLR ANP 7.60234
233 3T34 GDP 7.60234
234 4X8O AP5 7.60234
235 5AK0 8V1 7.60234
236 1IN4 ADP 7.60234
237 1S3G AP5 7.60234
238 4X1Z FUC GAL NDG 7.60234
239 1NHX FTB 7.60234
240 3QOX SAH 7.60234
241 1NHX PEP 7.60234
242 1UKZ ADP 7.60234
243 5U32 GDP 7.62712
244 1UYY BGC BGC 7.63359
245 2OFW ADX 7.69231
246 1VKJ A3P 7.7193
247 5ZXD ATP 7.75194
248 6G14 G4P 7.75194
249 1G6O ADP 7.75194
250 5N69 ADP 7.75194
251 4B9E FAH 7.75194
252 3H86 AP5 7.8125
253 3CQL NAG 7.81893
254 3BOS CDP 7.85124
255 3QXC ATP 7.85124
256 4TTQ ATP 7.90698
257 1PTR PRB 8
258 3FIU POP 8.03213
259 2DPY ADP 8.13953
260 3AB4 THR 8.13953
261 6AU6 GDP 8.18713
262 3LRE ADP 8.18713
263 1CS4 GSP 8.18713
264 5IRR GSP 8.18713
265 2RCN GDP 8.18713
266 2GDJ ANP 8.18713
267 4IDN GNP 8.18713
268 3FWY ADP 8.18713
269 4XVU ATP 8.18713
270 3FB4 AP5 8.18713
271 5E5U MLI 8.18713
272 4MKF AP5 8.18713
273 2BIF ANP 8.18713
274 2BIF SIN 8.18713
275 1K6M AGS 8.18713
276 4V03 ADP 8.18713
277 3FYH ADP 8.18713
278 2FJK 13P 8.18713
279 4OI4 ATP 8.18713
280 4CVN ADP 8.18713
281 1LK7 DER 8.18713
282 4DYG MES 8.19672
283 1B7T ADP 8.33333
284 1GQY ACP 8.52713
285 2IL4 COA 8.73786
286 2VVG ADP 8.77193
287 4AG5 ADP 8.77193
288 2XTN GTP 8.77193
289 3EC1 GDP 8.77193
290 5M04 GDP 8.77193
291 4ZG4 VO4 ADP 8.77193
292 1D2E GDP 8.77193
293 1XKV ATP 8.77193
294 1V8K ANP 8.77193
295 2R4V GSH 8.77193
296 5G41 AP5 8.77193
297 4MKG AP5 8.77193
298 5G3Y ADP 8.77193
299 1NN5 ANP 8.83721
300 1NN5 2DT 8.83721
301 3EZ2 ADP 8.91473
302 4D81 ADP 8.91473
303 1G8S MET 9.13043
304 5YV5 ADP 9.30233
305 1YQT ADP 9.30233
306 4H1V GNP 9.30233
307 4KBF AMP 9.30233
308 4IOK ADP 9.30233
309 4IOK XPO 9.30233
310 1KK8 BEF ADP 9.35252
311 6DEF GCP 9.35672
312 2HF9 GSP 9.35672
313 4PC3 GDP 9.35672
314 4J0Q GDP 9.35672
315 4LC1 GDP 9.35672
316 4WEI GLC GAL 9.35672
317 1AKY AP5 9.35672
318 1ZIN AP5 9.35672
319 2NCD ADP 9.35672
320 4LHD GLY 9.35672
321 2GWH A3P 9.35672
322 5YW5 ADE 9.49721
323 6H5E ANP 9.68992
324 5H4S RAM 9.68992
325 3DOE GTP 9.69697
326 1QF9 ADP 9.79381
327 1QF9 ALF 9.79381
328 1QF9 C5P 9.79381
329 3KTA AP5 9.82659
330 2GUC MAN 9.83607
331 2NU5 NAG 9.83607
332 2GUD MAN 9.83607
333 2HYR BGC GLC 9.83607
334 2NUO BGC 9.83607
335 2HYQ MAN MAN 9.83607
336 4P83 U5P 9.89011
337 1APZ ASP 9.92908
338 2CBZ ATP 9.94152
339 1BG2 ADP 9.94152
340 4P3Y GDP 9.94152
341 2D2F ADP 9.94152
342 3MD0 GDP 9.94152
343 5IFS ADP 9.94152
344 1OYY AGS 9.94152
345 4A4Z ANP 9.94152
346 6FAA ADP 9.94152
347 4NZ6 DGL 9.94152
348 1D2N ANP 9.94152
349 3HU3 AGS 9.94152
350 2WCU FUC 10.0671
351 5M7P ADP 10.0775
352 4PJ3 ANP 10.0775
353 2FNA ADP 10.0775
354 1SQL GUN 10.274
355 2ODE ALF GDP 10.2857
356 3KIF GDL 10.3774
357 1QHH ATP 10.4348
358 5XKT GNP 10.5
359 3EWA ANP 10.5263
360 3TK1 GDP 10.5263
361 5VGR GDP 10.5263
362 1P4V GLY 10.5263
363 1F9V ADP 10.8527
364 2GK6 ADP 10.8527
365 1SKQ GDP 11.1111
366 5MVR ADP 11.1111
367 4IEE AGS 11.1111
368 2WIC GNP 11.1111
369 4R98 GNH 11.1111
370 1NY5 ADP 11.1111
371 5ZBR ANP 11.1111
372 4NU0 AP5 11.1111
373 2O66 FLC 11.1111
374 1SVM ATP 11.1111
375 5CIC 51R 11.1111
376 2J0W ASP 11.1111
377 2XWL CTP 11.1111
378 5JBE MAL 11.1111
379 1R6B ADP 11.2403
380 4LYA ATP 11.2403
381 1ZUI SKM 11.3095
382 5GVR LMR 11.5385
383 1DCP HBI 11.5385
384 1SVK ALF GDP 11.6147
385 4YS0 ADP 11.6279
386 1JJV ATP 11.6959
387 2WJG GDP 11.6959
388 1XEX ATP 11.6959
389 3PCR GTP 12.0155
390 1IWE IMP 12.0155
391 6B4K ANP 12.0155
392 3BFX A3P 12.0155
393 6FMC DUE 12.0253
394 2WJH GDP 12.0482
395 2WJH FLC 12.0482
396 4NON GDP 12.2807
397 3P4X ADP 12.2807
398 1LVK MNT BEF 12.2807
399 3FKQ ATP 12.2807
400 4Y4V DAL 12.2807
401 1D6Z HY1 12.2807
402 4KAX GTP 12.4224
403 5H67 ATP 12.5
404 1F2U ATP 12.7517
405 1G7C 5GP 12.766
406 4ZKD GDP 12.8655
407 1JJ7 ADP 12.8655
408 2IXE ATP 12.8655
409 3HNT AXR BXY BXY BXX 13.0841
410 1FQJ ALF 13.2308
411 1FQJ GDP 13.2308
412 1FQK GDP 13.2308
413 1FQK ALF 13.2308
414 3IWD M2T 13.2353
415 5J1S ATP 13.3891
416 3TMK T5A 13.4259
417 4U00 ADP 13.4503
418 4YMU ATP 13.4503
419 3B5J 12D 13.4503
420 5GOE GDP 13.4503
421 1XX6 ADP 13.4503
422 4MDB RLT 13.4503
423 2QEN ADP 13.4503
424 1Y63 ADP 13.4503
425 3K5I AIR 13.4503
426 1Z6T ADP 13.5659
427 2XTZ GSP 14.0351
428 2PL3 ADP 14.0351
429 3BER AMP 14.0562
430 1GP2 GDP 14.0845
431 4CS9 AMP 14.2857
432 1RRC ADP 14.6199
433 4KFU ACP 14.6199
434 2GKS ADP 14.6199
435 2IS6 ADP 14.6199
436 4R2I ANP 14.6199
437 1IHU ADP 14.6199
438 1IHU AF3 14.6199
439 1AQU A3P 14.6199
440 2W58 ADP 14.7287
441 3PQC GDP 14.8718
442 4BAS GNP 15.0754
443 5MZN ADP 15.1163
444 4TMZ GSP 15.2047
445 4NCN GTP 15.2047
446 3CX8 GSP 15.2047
447 1ZCB GDP 15.2047
448 1MKY GDP 15.2047
449 3ZIA ADP 15.2047
450 3AB3 GDP 15.2047
451 3ZIA ATP 15.2047
452 2AWN ADP 15.7895
453 6CRK GDP 15.7895
454 3RLF ANP 15.7895
455 4QM7 GTP 15.7895
456 2CHG ANP 15.7895
457 2CDN ADP 15.9204
458 4XTR ATP 16.2162
459 4XTR ADP 16.2162
460 2ZTS ADP 16.9591
461 5X40 ACP 16.9591
462 4JLS 3ZE 17.1053
463 3QF7 ANP 17.5439
464 1GOT GDP 17.8082
465 4PYA 2X3 18.0124
466 4HSE ADP 18.1287
467 5Z69 AGS 18.6047
468 4P4T GDP 18.7134
469 2ATJ BHO 18.7134
470 1TL2 NDG 18.7134
471 4BQS ADP 18.75
472 4BQS K2Q 18.75
473 2ZR9 DTP 19.2982
474 1UJ2 ADP 19.2982
475 1UJ2 C5P 19.2982
476 1X6V ADP 19.3798
477 2W83 GTP 19.4805
478 3VY6 BGC BGC 19.8582
479 4HI0 GDP 19.883
480 6AIC AMP 19.883
481 5ODQ 9SB 19.883
482 4LPS GDP 20.4678
483 1H65 GDP 21.0526
484 5LLB 6YZ 21.0526
485 2X77 GDP 21.164
486 2Y69 CHD 21.6374
487 2OM2 GDP 22.2222
488 1XMV ADP 22.2222
489 1CR1 TTP 22.2222
490 5BN3 ADP 22.2222
491 3DEF GDP 23.9766
492 5WRI A3P 23.9766
493 4TQK NAG 24.4186
494 2CK3 ADP 24.5614
495 1W0J ADP 24.5614
496 2CK3 ANP 24.5614
497 3W5J GDP 24.5614
498 2V7Q ATP 24.5614
499 1W0J ADP BEF 24.5614
500 2V7Q ADP 24.5614
501 3DZD ADP 25.1462
502 4OUJ LBT 25.1462
503 3VX3 ADP 25.1462
504 5H7K GDP 25.731
505 5H7J GCP 25.731
506 4TL6 ANP 25.731
507 4KVA GTP 26.3158
508 4PPF FLC 26.3566
509 4M9Q GNP 26.9006
510 3KJI ADP 26.9006
511 4V0K GDP 27.2189
512 4B47 GDP 27.4854
513 3T12 GDP ALF 28.655
514 3T1O GDP 28.655
515 1LOB MMA 28.8462
516 1G7S GDP 29.2398
517 1YRB GDP 29.8246
518 5YT0 GDP 30.9942
519 5FG3 GDP 30.9942
520 4DCT GDP 31.5789
521 1S9D GDP 31.5789
522 1RE0 GDP 31.5789
523 1WF3 GNP 32.1637
524 3AQ4 GDP 32.1637
525 1NRJ GTP 32.2785
526 2D7D ADP 32.5
527 1ZD9 GDP 32.7485
528 4YLG GDP 32.7485
529 1YZG GDP 32.7485
530 1R4A GNP 33.3333
531 1ZJ6 G3D 33.3333
532 2QN6 GDP 33.3333
533 1J2J GTP 33.7349
534 2J59 GTP 33.7349
535 1O3Y GTP 33.7349
536 5KSZ GCP 36.8421
537 5KSP GDP 36.8421
538 1DAR GDP 37.4269
539 6C90 ADP 38.4615
540 2QTV GNP 38.5965
541 2ZEJ GDP 38.5965
542 4GOJ GNP 39.1813
543 4ZI2 GNP 39.1813
544 5KDO GDP 39.1892
545 1M2O GNP 39.7661
546 1F6B GDP 40.3509
547 5DI3 GNP 40.9357
548 2GJ8 ALF GDP 40.9357
549 3A1S GDP 43.8596
550 1SVI GDP 45.614
551 3GJX GTP 46.7836
552 3REF GDP 46.7836
553 3GJ4 GDP 46.7836
554 3GJ8 GDP 46.7836
555 3GJ5 GDP 46.7836
556 3GJ7 GDP 46.7836
557 1IBR GNP 47.3684
558 5UWQ GNP 47.3684
559 5UWP GNP 47.3684
560 6CIT GNP 47.3684
561 5UWR GNP 47.3684
562 5DHF GNP 47.3684
563 4HAT GNP 47.3684
564 5UWJ GNP 47.3684
565 5UWW GNP 47.3684
566 5DI9 GNP 47.3684
567 5UWI GNP 47.3684
568 5UWO GNP 47.3684
569 5UWU GNP 47.3684
570 5UWT GNP 47.3684
571 5UWS GNP 47.3684
572 5UWH GNP 47.3684
573 1WA5 GTP 47.3684
574 5BXQ GDP 47.3684
575 3GJ0 GDP 47.3684
576 3GJ3 GDP 47.3684
577 3RAB GNP 47.929
578 3WYF GTP 48.538
579 3WYG GTP 48.538
580 5UPK GNP 48.538
581 5OEC GDP 48.538
582 1D5C GDP 48.7654
583 1Z0J GTP 48.8235
584 1GRN GDP 49.1228
585 5XC5 GTP 49.1228
586 4ITR GDP 49.1228
587 1GRN AF3 49.1228
588 2NGR GDP 49.1228
589 2WMO GTP 49.1228
590 4DKX GDP 49.1228
591 4DID GDP 49.1228
592 2NGR AF3 49.1228
593 3E5H GNP 49.7076
594 1A4R GDP 49.7076
595 1A4R GNH 49.7076
596 1YZQ GNP 50
597 5WRJ A3P 50
Pocket No.: 2; Query (leader) PDB : 4K81; Ligand: GTP; Similar sites found with APoc: 39
This union binding pocket(no: 2) in the query (biounit: 4k81.bio2) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 4Z7X 3CX 2.94118
2 6F5W KG1 3.48837
3 4O48 ASP 3.48837
4 2Q37 3AL 3.50877
5 1K4M CIT 3.50877
6 5U83 ZN8 3.50877
7 4GNC ASO 3.87597
8 2XCU C5P 4.09357
9 1ZVX FIN 4.29448
10 2YY8 MTA 5.47264
11 5W11 CTR 5.81395
12 1DQN IMU 6.43275
13 3QDK QDK 6.58915
14 1Q19 SSC 6.58915
15 4QAG F95 6.76692
16 2PNZ 5GP 6.82731
17 2Y7P SAL 6.88073
18 4CTA ATP 7.01754
19 1EXF GLY 7.02479
20 2QQ0 ANP 7.06522
21 4OKD GLC GLC GLC 7.60234
22 5MEX PAP 7.60234
23 3BP1 GUN 8.18713
24 4LZB URA 8.18713
25 4PU6 ASP 8.39695
26 3R7F CP 9.35672
27 5EXK 5AD 9.68992
28 1NST A3P 9.94152
29 1MLY ACZ PLP 9.94152
30 2HXW FLC 10.9705
31 6ACS CIT 11.1111
32 4KJU 1RH 11.6279
33 1ZHS NAG NAG BMA MAN MAN 12.3894
34 4U60 SIA 13.5659
35 4U60 SIA GAL NGA 13.5659
36 4PVR ASP 14.0351
37 4UOX PLP 15.2047
38 1GET FAD 15.2047
39 1OFS SUC 35.4167
Pocket No.: 3; Query (leader) PDB : 4K81; Ligand: GTP; Similar sites found with APoc: 33
This union binding pocket(no: 3) in the query (biounit: 4k81.bio3) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 4Z0G 5GP 2.92398
2 1SBR VIB 3
3 3FSY SCA 3.50877
4 4IEN COA 3.68098
5 2Z48 A2G 4.09357
6 1P3D ANP 4.09357
7 5Z5I XYP 4.26357
8 4MZU TDR 4.67836
9 1I9G SAM 5.26316
10 1KZL CRM 5.28846
11 1LSH PLD 5.84795
12 1OBD AMP 6.20155
13 4DFU QUE 7.01754
14 5VYQ FON 7.05882
15 2ZL4 ALA ALA ALA ALA 7.14286
16 2BOS GLA GAL GLC NBU 7.35294
17 4MN7 SME 7.38255
18 5LTJ BEF 7.60234
19 1GPJ CIT 8.77193
20 4LO6 SIA GAL 9.47368
21 1GJW GLC 9.94152
22 5KNK 11A 10.0775
23 5ZI9 FLC 10.5263
24 1NE7 AGP 10.5263
25 2VHJ ADP 11.6279
26 1I0B PEL 12.4031
27 5T96 79J 12.8655
28 5C2N NAG 14.5833
29 5NTD BES 15.1163
30 4UOX PUT 15.2047
31 1ZX5 LFR 16.3743
32 4BCQ TJF 18.1287
33 1LOJ URI 18.3908
Pocket No.: 4; Query (leader) PDB : 4K81; Ligand: GTP; Similar sites found with APoc: 21
This union binding pocket(no: 4) in the query (biounit: 4k81.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 1T3D CYS 2.92398
2 1UAY ADN 3.50877
3 1XXR MAN 3.72671
4 2RI1 GLP 4.25532
5 5XQL C2E 5.84795
6 5KXE 6Y2 6.43275
7 5VLQ ANP 6.43275
8 1WY7 SAH 7.01754
9 2QQ0 ADP 7.06522
10 2QQ0 TMP 7.06522
11 3IT6 ORN 7.31707
12 5EY0 ILE 7.36434
13 5E50 ALA TYR ASP GLU SEP TPO ASP GLU GLU 8.10811
14 6C0B MLI 8.52713
15 5TQZ GLC 11.3333
16 2WZF BGC 11.6959
17 1R18 SAH 12.3348
18 1YBH P22 15.7895
19 1C3V PDC 16.3743
20 2ZJ5 ADP 16.6667
21 4X1B MLI 22.2222
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