Receptor
PDB id Resolution Class Description Source Keywords
4J86 1.48 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF BETA'-COP/YWBP1 COMPLEX SACCHAROMYCES CEREVISIAE BETA PROPELLER DILYSINE MOTIF ER RETRIEVAL PROTEIN TRANSP
Ref.: RULES FOR THE RECOGNITION OF DILYSINE RETRIEVAL MOT COATOMER. EMBO J. V. 32 926 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
THR PHE LYS LYS THR ASN D:1;
C:1;
 Valid;
Valid;
 none;
none;
 submit data
739.872 n/a O=C([...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4J73 1.44 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF BETA'-COP/P25 COMPLEX SACCHAROMYCES CEREVISIAE BETA PROPELLER DILYSINE MOTIF ER RETRIEVAL SIGNAL COATOMERECOGNITION PROTEIN TRANSPORT
Ref.: RULES FOR THE RECOGNITION OF DILYSINE RETRIEVAL MOT COATOMER. EMBO J. V. 32 926 2013
Members (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
70% Homology Family (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
11 4J8B - LEU LYS THR LYS LEU LEU n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: THR PHE LYS LYS THR ASN; Similar ligands found: 101
No: Ligand ECFP6 Tc MDL keys Tc
1 THR PHE LYS LYS THR ASN 1 1
2 CYS THR PHE LYS THR LYS THR ASN 0.791209 0.98
3 THR LYS CYS VAL PHE MET 0.6 0.836364
4 CYS ASP PTR ALA ASN PHE LYS 0.576087 0.877551
5 ALA ILE PHE GLN SER SER MET THR LYS 0.550847 0.857143
6 SER ILE ILE ASN PHE GLU LYS LEU 0.529915 0.886792
7 SER GLY ILE PHE LEU GLU THR SER 0.527778 0.830189
8 ASP PHE M3L THR ASP 0.523364 0.754098
9 GLU ILE ILE ASN PHE GLU LYS LEU 0.521368 0.865385
10 THR ASN GLU PHE TYR ALA 0.514019 0.796296
11 GLY ALA PHE THR PHE ASN GLU ASP PHE 0.513761 0.807692
12 ILE LEU ALA LYS PHE LEU HIS THR LEU 0.512 0.783333
13 THR LYS ASN TYR LYS GLN PHE SER VAL 0.508621 0.857143
14 THR LYS ASN TYR LYS GLN THR SER VAL 0.508333 0.907407
15 ALA GLU THR PHE 0.505263 0.836735
16 ILE ASN PHE ASP PHE ASN THR ILE 0.504762 0.777778
17 GLU ASN GLN LYS GLU TYR PHE PHE 0.5 0.833333
18 LYS MET ASN THR GLN PHE THR ALA VAL 0.496 0.890909
19 LYS VAL ILE THR PHE ILE ASP LEU 0.491525 0.903846
20 THR LYS THR ALA THR ILE ASN ALA SER 0.490909 0.865385
21 GLN PHE LYS ASP ASN VAL ILE LEU LEU 0.484127 0.849057
22 GLU GLN TYR LYS PHE TYR SER VAL 0.483051 0.839286
23 TYR GLN GLU SER THR ASP PHE THR PHE LEU 0.480769 0.754717
24 THR ASN GLU TYR LYS VAL 0.477064 0.867925
25 THR PHE ALY SER ILE MET LYS 0.476562 0.807018
26 ALA LYS PHE ARG HIS ASP 0.466667 0.693548
27 VAL LYS VAL VAL ALA LYS LYS TYR ARG ASN 0.465517 0.79661
28 LEU LYS THR LYS LEU LEU 0.464646 0.843137
29 SER ILE ILE GLY PHE GLU LYS LEU 0.463415 0.833333
30 SER LEU PHE ASN THR VAL ALA THR LEU 0.462185 0.826923
31 LEU PRO PHE ASP LYS THR THR ILE MET 0.460432 0.716418
32 CYS THR GLU LEU LYS LEU ASN ASP TYR 0.456 0.872727
33 ALA THR ARG ASN PHE SER GLY 0.453782 0.807018
34 PHE LEU ALA TYR LYS 0.451327 0.75
35 GLY ILE LEU GLU PHE VAL PHE THR LEU 0.45 0.814815
36 LEU THR THR LYS LEU THR ASN THR ASN ILE 0.449541 0.849057
37 GLU GLU TYR LEU GLN ALA PHE THR TYR 0.448819 0.75
38 ALA VAL TYR ASN PHE ALA THR MET 0.447154 0.716667
39 ASP PHE GLU GLU ILE 0.446602 0.745098
40 ALA PHE THR SER 0.443299 0.78
41 THR GLU ASN LEU TYR PHE GLN SER GLY THR 0.442748 0.810345
42 THR THR ALA PRO PHE LEU SER GLY LYS 0.442029 0.75
43 ACE ASN TRP GLU THR PHE 0.439024 0.728814
44 GLN VAL ASN PHE LEU GLY LYS 0.439024 0.865385
45 PHE LEU SER TYR LYS 0.438596 0.789474
46 LEU PRO PHE ASP LYS SER THR ILE MET 0.438356 0.705882
47 GLU GLU TYR LEU LYS ALA TRP THR PHE 0.438356 0.758065
48 GLY TYR GLU ASN PRO THR TYR LYS PHE PHE 0.4375 0.738462
49 ALA GLU THR PHE TYR VAL ASP GLY 0.435897 0.763636
50 PHE LEU GLU LYS 0.433962 0.803922
51 FME TYR PHE ILE ASN ILE LEU THR LEU 0.430769 0.721311
52 ILE ARG LYS ILE LEU PHE LEU ASP GLY ILE 0.430657 0.716667
53 LYS THR LYS LEU LEU 0.43 0.843137
54 LEU PRO PHE GLU LYS SER THR VAL MET 0.426573 0.716418
55 LEU ASP GLU GLU THR GLY GLU PHE LEU 0.42623 0.884615
56 THR LYS CYS VAL VAL MET 0.424528 0.781818
57 ALA MET TYR LYS 0.424528 0.736842
58 TYR GLU LEU ASP GLU LYS PHE ASP ARG LEU 0.421053 0.741935
59 ASP ASN ARG LEU GLY LEU VAL TYR GLN PHE 0.419643 0.678571
60 LYS VAL LEU PHE LEU ASP GLY 0.418803 0.807692
61 GLY GLY LYS LYS LYS TYR GLN LEU 0.418803 0.8
62 LYS THR LYS 0.417582 0.857143
63 CYS VAL ASN GLY SER CYS PHE THR VAL 0.416 0.849057
64 GLY ARG PHE ALA ALA ALA ILE ALA LYS 0.416 0.724138
65 PHE LEU SER THR LYS 0.415929 0.865385
66 PHE SER GLN HIS LYS THR SER TPO ILE 0.413793 0.705882
67 GLY GLY LYS LYS LYS TYR LYS LEU 0.410714 0.8
68 VAL ASP SER LYS ASN THR SER SER TRP 0.410448 0.813559
69 ASN LYS PTR GLY ASN CA 0.410256 0.721311
70 ACE PHE LYS PHE PSA LEU AAR 0.409449 0.754098
71 ILE LEU ALA LYS PHE LEU HIS GLU LEU 0.409091 0.716667
72 VAL GLN GLN GLU SER SER PHE VAL MET 0.408333 0.785714
73 ALA THR PRO PHE GLN GLU 0.408 0.733333
74 GLY ALA GLN THR PHE TYR VAL ASP GLY ALA 0.408 0.803571
75 ASP PHE SER ILE 0.407767 0.788462
76 LEU ARG ASN GLN SER VAL PHE ASN PHE 0.407692 0.754098
77 CYS THR GLU LEU LYS LEU SER ASP TYR 0.407692 0.839286
78 SER LEU ASN TYR ILE ILE LYS VAL LYS GLU 0.407407 0.875
79 GLY GLN VAL PRO PHE SER LYS GLU GLU CYS 0.407143 0.734375
80 ALA PHE ARG ILE PRO LEU THR ARG 0.407143 0.681159
81 THR ARG ARG GLU THR GLN LEU 0.40708 0.77193
82 VAL THR THR ASP ILE GLN VAL LYS VAL 0.40678 0.846154
83 VAL VAL SER HIS PHE ASN ASP 0.406504 0.745763
84 GLY ILE LEU GLY LEU VAL PHE THR LEU 0.406504 0.811321
85 ARG PRO MET THR PHE LYS GLY ALA LEU 0.406452 0.643836
86 CYS VAL PHE MET 0.40566 0.672727
87 GLU THR PHE TYR VAL ASP GLY 0.404959 0.803571
88 ARG ABA GLN ILE PHE ALA ASN ILE 0.404762 0.843137
89 GLY ASP GLU VAL LYS VAL PHE ARG 0.40458 0.754386
90 ILE ASP TRP PHE ASP GLY LYS ASP 0.404412 0.704918
91 LYS TYR LYS 0.40404 0.788462
92 LYS HPE LYS 0.40404 0.795918
93 ALA THR LYS ILE ASP ASN LEU ASP 0.403361 0.849057
94 THR ASN GLU PHE TYR PHE 0.401869 0.722222
95 0Z3 0.401869 0.633333
96 GLU THR VAL ARG PHE GLN SER ASP 0.401515 0.789474
97 LYS GLN TRP LEU VAL TRP LEU PHE LEU 0.40146 0.7
98 ASN GLY TYR GLU ASN PRO THR TYR LYS 0.4 0.738462
99 ALA ARG THR M3L GLN THR ALA ALA LYS ALA 0.4 0.681818
100 VAL ASN ASP ILE PHE GLU ALA ILE 0.4 0.754717
101 PHE PRO THR LYS ASP VAL ALA LEU 0.4 0.774194
Similar Ligands (3D)
Ligand no: 1; Ligand: THR PHE LYS LYS THR ASN; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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