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Receptor
PDB id Resolution Class Description Source Keywords
4J0Q 2.29 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA ELONGATION FACTOR TU PSEUDOMONAS PUTIDA TRANSLATION GDP GTP GTPASE ELONGATION PSEUDOMONAS
Ref.: HUMAN OXYGEN SENSING MAY HAVE ORIGINS IN PROKARYOTI ELONGATION FACTOR TU PROLYL-HYDROXYLATION PROC.NATL.ACAD.SCI.USA V. 111 13331 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG C:401;
E:401;
A:401;
D:401;
B:401;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
GDP C:402;
E:402;
A:402;
D:402;
B:402;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MES E:403;
B:403;
A:403;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
195.237 C6 H13 N O4 S C1COC...
MPD A:404;
D:403;
A:405;
E:404;
C:403;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
submit data
118.174 C6 H14 O2 C[C@@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4J0Q 2.29 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA ELONGATION FACTOR TU PSEUDOMONAS PUTIDA TRANSLATION GDP GTP GTPASE ELONGATION PSEUDOMONAS
Ref.: HUMAN OXYGEN SENSING MAY HAVE ORIGINS IN PROKARYOTI ELONGATION FACTOR TU PROLYL-HYDROXYLATION PROC.NATL.ACAD.SCI.USA V. 111 13331 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 4J0Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (18)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1D2E Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5W76 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5W7Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1DG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 2BVN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
6 1EFC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 6EZE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 4H9G - 14J C5 H3 Br O3 c1cc(oc1C(....
9 4LBZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
10 4LC0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
11 1EXM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
12 2C78 - PUL C47 H66 O13 C[C@@H]1[C....
13 1EFT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
14 4LBV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
15 4LBW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
16 1HA3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
17 4J0Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
18 5W75 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1D2E Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1DG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 2BVN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
4 1EFC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 6EZE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
6 4H9G - 14J C5 H3 Br O3 c1cc(oc1C(....
7 4LBZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 4J0Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 5W75 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4J0Q; Ligand: GDP; Similar sites found with APoc: 618
This union binding pocket(no: 1) in the query (biounit: 4j0q.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1P9B GDP 1.15473
2 2WZF BGC 1.15473
3 4FRZ ADP 1.29534
4 3COB ADP 1.35501
5 2ZPT A3P 1.35593
6 1R6B ADP 1.38568
7 2OG2 MLI 1.39276
8 1ZUA NAP 1.57729
9 1ZUA TOL 1.57729
10 1XP8 AGS 1.63934
11 3B9Q MLI 1.65563
12 1SVK ALF GDP 1.69972
13 5I34 GDP 1.84758
14 1F5N GNP 1.84758
15 1XKV ATP 1.84758
16 1G41 ADP 1.84758
17 6F97 FAD 1.84758
18 3FYH ADP 1.86335
19 4BFW ZVW 1.88679
20 3DZD ADP 1.90217
21 1BH2 GSP 1.90476
22 1WF3 GNP 1.99336
23 2QEN ADP 2
24 2F9L GDP 2.01005
25 4LIK CIT 2.04082
26 2GKS ADP 2.07852
27 2DPY ADP 2.07852
28 3ZL8 ADP 2.07852
29 1FWY UD1 2.1148
30 1WPY BTN 2.12766
31 2B8W ALF 5GP 2.13415
32 2ZFI ADP 2.18579
33 5UIV ADP 2.20264
34 3MD0 GDP 2.25352
35 2GDJ ANP 2.27273
36 2ZR9 DTP 2.29226
37 2BIF ANP 2.30947
38 2BIF SIN 2.30947
39 5AK0 8V1 2.30947
40 2XAU ADP 2.30947
41 2GMV UN8 2.30947
42 2GMV PEP 2.30947
43 1NHX FTB 2.30947
44 1NHX PEP 2.30947
45 4A4Z ANP 2.30947
46 5MZN ADP 2.30947
47 5ZXD ATP 2.30947
48 3CV2 OXL 2.30947
49 2HV8 GTP 2.32558
50 1RRC ADP 2.32558
51 5KSZ GCP 2.35849
52 2D7C GTP 2.39521
53 1JJV ATP 2.42718
54 3E70 GDP 2.43902
55 2JAQ DCP 2.43902
56 4GBM A3P 2.47678
57 4LPS GDP 2.47934
58 1K6M AGS 2.54042
59 1Z6T ADP 2.54042
60 2NYA MGD 2.54042
61 1QHG ATP 2.54042
62 3FWY ADP 2.54777
63 6B4K ANP 2.55814
64 3ZFD ANP 2.5641
65 2VVG ADP 2.57143
66 1U0J ADP 2.62172
67 5KSP GDP 2.63158
68 2WPW ACO 2.65487
69 1G6O ADP 2.72727
70 5KF9 ACO 2.7439
71 5HR5 ADP 2.77136
72 6B8B ADP 2.77136
73 5I0H ADP BEF 2.77136
74 1GQY ACP 2.77136
75 3TMK T5A 2.77778
76 5MEX PAP 2.79503
77 5MEX SZZ 2.79503
78 4X8O AP5 2.80374
79 4QRH 0O2 2.85714
80 3QXC ATP 2.89256
81 4FCW ADP 2.89389
82 2F3R G5P 2.89855
83 4QM7 GTP 2.92398
84 1D2N ANP 2.94118
85 4LJ9 ACP 2.94985
86 2IXE ATP 2.95203
87 1ZUI SKM 2.97619
88 1FNN ADP 3.00231
89 1OYY AGS 3.00231
90 1Q19 APC 3.00231
91 1BXK NAD 3.00231
92 2WKQ GTP 3.01205
93 4KBF AMP 3.0137
94 1QF5 RPL 3.01624
95 1QF5 GDP 3.01624
96 3BFX A3P 3.04054
97 3B7G ANP 3.04348
98 1HXD BTN 3.11526
99 1BOB ACO 3.125
100 1A5Z NAD 3.1348
101 3GJ0 GDP 3.16742
102 3GJ4 GDP 3.16742
103 3GJ5 GDP 3.16742
104 1V8K ANP 3.17073
105 1Z06 GNP 3.1746
106 3HU3 AGS 3.23326
107 4IHQ ADP 3.23326
108 4IOK ADP 3.23326
109 4IOK XPO 3.23326
110 4PJ3 ANP 3.23326
111 4KFU ACP 3.30189
112 2YOH WMJ 3.33333
113 4R2I ANP 3.33333
114 2GWH A3P 3.3557
115 1AQU A3P 3.367
116 1BG2 ADP 3.38462
117 1TAD GDP 3.39506
118 1TAD ALF 3.39506
119 5X40 ACP 3.42466
120 1B0U ATP 3.43511
121 1SVM ATP 3.44828
122 1OFH ADP 3.44828
123 2JEV NHQ 3.44828
124 5Y6N ADP 3.4642
125 3TBK ANP 3.4642
126 1OE0 TTP 3.47826
127 1G6H ADP 3.50195
128 2B4D COA 3.50877
129 4GOX A3P 3.51438
130 2ODE ALF GDP 3.5461
131 2JJK R15 3.5503
132 1DAK DPU 3.57143
133 1DAK ADP 3.57143
134 4GDX GLU 3.58974
135 3REF GDP 3.60825
136 3VX3 ADP 3.62903
137 3P4X ADP 3.63196
138 3TK1 GDP 3.63636
139 3H86 AP5 3.64583
140 5MUJ RAM ARA RAM 8OQ RAM GAL XXM 8PK 3.67454
141 1W0J ADP 3.67647
142 1W0J ADP BEF 3.67647
143 1YZN GNP 3.69515
144 4ZG4 VO4 ADP 3.69515
145 4PFO ADP 3.69515
146 3H4S ADP 3.7037
147 4KOT CE3 3.7037
148 1CR1 TTP 3.71622
149 1J99 AND 3.75427
150 5NM7 GLY 3.7594
151 1G3Q ADP 3.79747
152 1M7B GTP 3.80435
153 2I4I AMP 3.83693
154 2XTN GTP 3.84615
155 1JJ7 ADP 3.84615
156 2IYL GDP 3.87324
157 3GE7 AFQ 3.88601
158 4NE2 ADP 3.89222
159 4NE2 SH2 3.89222
160 1YZG GDP 3.91061
161 1X6V ADP 3.9261
162 2AWN ADP 3.93701
163 3IUY AMP 3.94737
164 4H6U ACO 4
165 3ZQ6 ADP ALF 4.01235
166 5Z69 AGS 4.03226
167 4R3L COA 4.04624
168 3QVV A3P 4.0678
169 3QVV 3QV 4.0678
170 4AG5 ADP 4.08163
171 2FFQ GSP 4.09357
172 1ION ADP 4.11523
173 1W5T ANP 4.12621
174 1W5T ADP 4.12621
175 4DID GDP 4.14508
176 1IWE IMP 4.15704
177 1NY5 ADP 4.15704
178 3DKP ADP 4.15704
179 2ZPA ADP 4.15704
180 1A4R GDP 4.18848
181 1A4R GNH 4.18848
182 2NGR GDP 4.18848
183 1GRN GDP 4.18848
184 1SQ5 ADP 4.22078
185 4TMK T5A 4.22535
186 1E2K TMC 4.22961
187 5BQ5 ADP BEF 4.2328
188 2XTZ GSP 4.23729
189 5BYK A3P 4.2471
190 5BYK OAQ 4.2471
191 1OXV ANP 4.24929
192 1L2T ATP 4.25532
193 4HSE ADP 4.28212
194 5WRJ A3P 4.29043
195 5EP2 AZU 4.29688
196 1T5C ADP 4.29799
197 3RWO GDP 4.32432
198 4UXH T5A 4.34783
199 3ZS9 ADP ALF 4.38799
200 2WOJ ADP ALF 4.38799
201 1YQT ADP 4.38799
202 1W4R TTP 4.38799
203 4YS0 ADP 4.38799
204 2ORV 4TA 4.38799
205 2VTD LKM 4.38799
206 1NJF AGS 4.4
207 1NJF ADP 4.4
208 4P4T GDP 4.44444
209 4U5X GNP 4.49438
210 4B5P ACO 4.5
211 1I0B PEL 4.51807
212 5N69 ADP 4.52261
213 5E5U MLI 4.52261
214 4YMU ATP 4.54545
215 3EC1 GDP 4.60705
216 4NON GDP 4.61538
217 3PQC GDP 4.61538
218 1P72 ADP 4.61894
219 3FB4 AP5 4.62963
220 1QF9 C5P 4.63918
221 1QF9 ADP 4.63918
222 1QF9 ALF 4.63918
223 2GJ8 ALF GDP 4.65116
224 2BEK ATP 4.66926
225 6AIC AMP 4.6729
226 5CK5 GDP 4.74684
227 1BO4 COA 4.7619
228 4ITM ATP 4.7619
229 1GOJ ADP 4.78873
230 1IN4 ADP 4.79042
231 3BFV ADP 4.79705
232 6DVH FMN 4.82234
233 1IHU ADP 4.84988
234 1IHU AF3 4.84988
235 1YTM ATP 4.84988
236 4IDN GNP 4.84988
237 4WZ6 ATP 4.84988
238 5YV5 ADP 4.84988
239 2Z5F A3P 4.84988
240 3D2M COA 4.84988
241 2V5K OXM 4.87805
242 2ZEJ GDP 4.8913
243 2Q2Y ADP 4.90463
244 2Q2Y MKR 4.90463
245 3JVH HHV 4.91803
246 3LOO B4P 4.93151
247 3B5J 12D 4.93827
248 5HGZ ACO 4.93827
249 3DC4 ADP 4.94186
250 1ZIN AP5 5.06912
251 4MKF AP5 5.06912
252 1LVK MNT BEF 5.08083
253 5LB3 ADP 5.08083
254 4IEE AGS 5.08083
255 2PL3 ADP 5.08475
256 3GJ7 GDP 5.10204
257 3KJI ADP 5.11811
258 4KVX ACO 5.12821
259 5YGE ACO 5.17241
260 2WIC GNP 5.24345
261 2VWT PYR 5.24345
262 5KUT GDP 5.29101
263 4D81 ADP 5.30035
264 4R43 GDP 5.31178
265 2FAH GDP 5.31178
266 2WHX ADP 5.31178
267 1OS1 PYR 5.31178
268 1OS1 ATP 5.31178
269 2JLR ANP 5.31178
270 3RAB GNP 5.32544
271 1CM0 COA 5.35714
272 4HDO GNP 5.38922
273 1X8J A3P 5.41311
274 1JI0 ATP 5.41667
275 2O0J ADP 5.45455
276 1KY3 GDP 5.49451
277 3UIE ANP 5.5
278 2GK6 ADP 5.54273
279 4ZDJ UTP 5.54273
280 4HAT GNP 5.55556
281 5BXQ GDP 5.55556
282 5L3W GDP 5.55556
283 1IBR GNP 5.55556
284 1H65 GDP 5.55556
285 5GVR LMR 5.55556
286 2W9S NDP 5.59006
287 5L3V GDP 5.68562
288 1Q20 A3P 5.68562
289 1Q20 PLO 5.68562
290 5L3S GNP 5.74324
291 5L3S G 5.74324
292 6C90 ADP 5.76923
293 2FSH ANP 5.77367
294 5M04 GDP 5.83333
295 4K4D HFQ 5.83942
296 1ZRH A3P 5.83942
297 1XMV ADP 5.89888
298 2QQ0 THM 5.97826
299 2QQ0 ANP 5.97826
300 2QQ0 TMP 5.97826
301 2QQ0 ADP 5.97826
302 2PZ8 APC 5.98592
303 2CK3 ANP 6
304 2CK3 ADP 6
305 5HH0 COA 6
306 3WQT ANP 6.00462
307 1TQ4 GDP 6.05327
308 3T1O GDP 6.06061
309 2V7Q ATP 6.06061
310 2V7Q ADP 6.06061
311 1NST A3P 6.15385
312 4YRY FAD 6.15942
313 1M7G AV2 6.16114
314 1M7G ADX 6.16114
315 1M7G ADP 6.16114
316 4LC1 GDP 6.23145
317 1NF3 GNP 6.25
318 5BN3 ADP 6.25
319 4TL6 ANP 6.32411
320 3NC9 TR3 6.38978
321 2C9O ADP 6.46651
322 4XTX 590 6.46651
323 1YRB GDP 6.48855
324 1LVG ADP 6.56566
325 1KAO GDP 6.58683
326 5ZBR ANP 6.66667
327 4DCT GDP 6.69746
328 5TIV A3P 6.71937
329 2BCG GDP 6.79612
330 3M1I GTP 6.80628
331 1WA5 GTP 6.81818
332 2Y65 ADP 6.84932
333 4PX9 ADP 6.84932
334 1KO8 6PG 6.85714
335 3NHB ADP 6.86275
336 3RLF ANP 6.92841
337 1P4A PCP 7.01754
338 2QG6 NMN 7.03518
339 1EK0 GNP 7.05882
340 2G77 GDP 7.07071
341 2NCD ADP 7.14286
342 6AU6 GDP 7.1618
343 4QOS ADP 7.16981
344 3AB3 GDP 7.31707
345 1M2O GNP 7.36842
346 1MKY GDP 7.3903
347 3RC3 ANP 7.3903
348 3IQE F42 7.3903
349 4M7V NAP 7.42857
350 1FQK GDP 7.48299
351 2RCN GDP 7.5419
352 2J0V GDP 7.54717
353 5L3R GCP 7.6412
354 2OFW ADX 7.69231
355 1B7T ADP 7.69231
356 3T5G GDP 7.73481
357 1G3M A3P 7.82313
358 1G3M PCQ 7.82313
359 1O3Y GTP 7.83133
360 4NU0 AP5 7.8341
361 4MKG AP5 7.8341
362 1S3G AP5 7.8341
363 5TSH ADP 7.85219
364 5TSH ANP 7.85219
365 3BD9 A3P 7.85714
366 6BSX GDP 7.86517
367 6BSX E7S 7.86517
368 4PSW COA 7.89474
369 1VM6 NAD 7.89474
370 2ZE7 DST 7.90514
371 1S8F GDP 7.9096
372 2W58 ADP 7.92079
373 1S9D GDP 7.92683
374 1FP6 ADP 7.95848
375 1ZJ6 G3D 8.02139
376 4CVN ADP 8.0292
377 4ZNL BEF ADP 8.0292
378 2VB6 ADP BEF 8.05369
379 1AKY AP5 8.18182
380 4Q1A UDP 8.21429
381 4Q1A 2XZ 8.21429
382 3BOS CDP 8.26446
383 1FZQ GDP 8.28729
384 4AVB ACO 8.31409
385 2OM2 GDP 8.33333
386 2QTV GNP 8.38323
387 3BER AMP 8.43373
388 2B8T THM 8.52018
389 1VHT BA3 8.54503
390 5LLB 6YZ 8.55019
391 5ZB0 ADP 8.58586
392 5ZB0 TYD 8.58586
393 4U00 ADP 8.60656
394 1GUA GNP 8.64198
395 1QHH ATP 8.69565
396 1NRJ GTP 8.7156
397 1GXU 2HP 8.79121
398 4TTQ ATP 8.83721
399 3QKT ANP 8.84956
400 4ITR GDP 8.86076
401 1UKZ ADP 8.86699
402 4WOP CTP 8.88889
403 5XKT GNP 9
404 1CJW COT 9.03614
405 1Z83 AP5 9.18367
406 1Z0A GDP 9.1954
407 2ZJ5 ADP 9.23787
408 2HF9 GSP 9.29204
409 2XT3 ADP 9.30233
410 4K81 GTP 9.35672
411 3CX8 GSP 9.35961
412 3IIJ ADP 9.44444
413 1VKJ A3P 9.47368
414 1Z0F GDP 9.49721
415 2PEZ DAT 9.49721
416 2PEZ GGZ 9.49721
417 4BAS GNP 9.54774
418 1PUJ GNP 9.57447
419 6D5J GNP 9.58084
420 6D5E GNP 9.58084
421 6BVJ GNP 9.58084
422 6D59 GNP 9.58084
423 6D56 GNP 9.58084
424 6BVL GNP 9.58084
425 6D55 GNP 9.58084
426 6D5L GNP 9.58084
427 6D5H GNP 9.58084
428 6BVK GNP 9.58084
429 6BVI GNP 9.58084
430 6D5G GNP 9.58084
431 6BVM GNP 9.58084
432 6D5V GNP 9.58084
433 6D5M GNP 9.58084
434 2UZI GTP 9.63855
435 1CLU DBG 9.63855
436 1WQ1 GDP 9.63855
437 3DDC GNP 9.63855
438 1NVV GNP 9.63855
439 2CHG ANP 9.73451
440 1F9V ADP 9.79827
441 3KTA AP5 9.82659
442 3KUD GDP 9.87654
443 1E96 GTP 9.89583
444 3DEF GDP 9.92366
445 1Z0J GTP 10
446 1UPT GTP 10
447 1G16 GDP 10
448 3QF7 ANP 10
449 4HI0 GDP 10.0503
450 1YVD GNP 10.0592
451 3SBD GNP 10.1604
452 6CS8 F9Y 10.231
453 1GWN GTP 10.2439
454 2W2X GSP 10.2703
455 4C4P GNP 10.2804
456 1LFD GNP 10.3448
457 5HCN GCP 10.3448
458 4HUT ATP 10.4712
459 1D5C GDP 10.4938
460 1QSN COA 10.4938
461 3MGB PAP 10.6583
462 2FJU GSP 10.6742
463 1U8Z GDP 10.7143
464 3A4M ADP 10.7692
465 1VG9 GDP 10.8108
466 1VG1 GDP 10.8108
467 3QBT GNP 10.9195
468 2CJW GDP 10.9375
469 2KIN ADP 11
470 1P3D ANP 11.0855
471 5UQW GDP 11.1111
472 5OCG GNP 11.1111
473 4WZA ADP 11.2319
474 4WZA ACP 11.2319
475 2A5J GDP 11.3164
476 5TAR GDP 11.3514
477 5TB5 GDP 11.3514
478 5Z2M GTP 11.3636
479 5XC5 GTP 11.3636
480 1T8U A3P 11.3971
481 1T8U UAP SGN IDS SGN 11.3971
482 6DEF GCP 11.509
483 3CH5 GDP 11.5385
484 2RGX AP5 11.6505
485 3T12 GDP ALF 11.7647
486 4NCN GTP 11.7783
487 2CE7 ADP 11.7783
488 3BC1 GNP 11.8644
489 2GCN GDP 11.9403
490 2GCO GNP 11.9403
491 1RJ9 GCP 12
492 2HT6 GDP 12.069
493 4NSQ COA 12.1053
494 6FA4 GNP 12.1387
495 2QZ4 ADP 12.2137
496 5U32 GDP 12.2881
497 4M9Q GNP 12.3348
498 1Z08 GNP 12.3529
499 1MH1 GNP 12.3656
500 5O2T GSP 12.426
501 1G4U GDP 12.5
502 5WRI A3P 12.5
503 4K49 HFQ 12.5
504 1OIX GDP 12.5654
505 1OIV GDP 12.5654
506 5WLB GNP 12.6506
507 1ZD9 GDP 12.7021
508 2VBQ BSJ 12.7273
509 1FL2 FAD 12.9032
510 1YZQ GNP 12.9412
511 4V0K GDP 13.0178
512 1NN5 2DT 13.0233
513 1NN5 ANP 13.0233
514 5EXT ADP 13.0769
515 5O74 GDP 13.198
516 2D2F ADP 13.6
517 1DAR GDP 13.6259
518 1F6B GDP 13.6364
519 1ZC3 GNP 13.7143
520 4OI4 ATP 13.913
521 5UWP GNP 13.9241
522 5DIF GNP 13.9241
523 5UWQ GNP 13.9241
524 5UWU GNP 13.9241
525 6CIT GNP 13.9241
526 5UWI GNP 13.9241
527 5UWH GNP 13.9241
528 5UWO GNP 13.9241
529 5UWJ GNP 13.9241
530 5UWS GNP 13.9241
531 5UWW GNP 13.9241
532 5UWR GNP 13.9241
533 5DHF GNP 13.9241
534 5DI9 GNP 13.9241
535 1KUV CA5 14.0097
536 1G7S GDP 14.0878
537 1XX6 ADP 14.1361
538 1FQJ GDP 14.2857
539 1RE0 GDP 14.4796
540 2A5F GTP 14.5078
541 1XEX ATP 14.5349
542 3W5J GDP 14.7059
543 4XTR ADP 14.7826
544 4XTR ATP 14.7826
545 4XVU ATP 14.7826
546 1Z2A GDP 14.881
547 1CS4 GSP 14.9746
548 2D7D ADP 15
549 3GJ3 GDP 15.1515
550 3FVQ ATP 15.3203
551 3Q85 GNP 15.3846
552 1VG0 GDP 15.4589
553 1VG8 GNP 15.4589
554 1DS6 GDP 15.625
555 1I4D GDP 15.625
556 1R4A GNP 15.6863
557 5KDO GDP 16.2162
558 3Q72 GNP 16.2651
559 3GJ8 GDP 16.3043
560 1GOT GDP 16.4384
561 4BQS K2Q 16.4773
562 4BQS ADP 16.4773
563 1HE1 GDP 17.0455
564 2IS6 ADP 17.0901
565 1OW3 GDP 17.0984
566 1MR3 G3D 17.1271
567 5FG3 GDP 17.321
568 5UWT GNP 17.3913
569 2ZFZ ARG 17.7215
570 5IRC GDP 17.7419
571 3A1S GDP 17.8295
572 5HPY GDP 17.8378
573 4D0N GDP 17.8378
574 1KMQ GNP 17.9348
575 1UJ2 ADP 18.254
576 1UJ2 C5P 18.254
577 2CDN ADP 18.408
578 1TX4 ALF GDP 18.6441
579 4B47 GDP 18.7328
580 1X1R GDP 19.1011
581 1RYH GNP 19.2118
582 1KSH GDP 19.3548
583 1KK8 BEF ADP 19.4245
584 2FH5 GTP 19.4595
585 4H1V GNP 19.5122
586 3VPB ADP 19.6429
587 1TU3 GNP 19.883
588 1R2Q GNP 20
589 1F2U ATP 20.1342
590 3MJH GTP 20.2381
591 2C5L GTP 20.5128
592 5YT0 GDP 20.6044
593 4R98 GNH 20.6642
594 2A9K GDP 21.9731
595 1SVI GDP 22.0513
596 3ZIA ATP 22.2222
597 3ZIA ADP 22.2222
598 6G14 G4P 22.449
599 5UPK GNP 22.9167
600 1J2J GTP 24.4444
601 1W7J ADP BEF 24.5033
602 3KP6 SAL 24.5033
603 1Z0K GTP 25
604 1CXZ GSP 25.8242
605 2WJG GDP 26.0638
606 6CRK GDP 28.169
607 1GP2 GDP 28.169
608 4RD0 GDP 28.6747
609 2QN6 GDP 28.9855
610 5LS7 ACO 29.2683
611 2WJH GDP 29.5181
612 2WJH FLC 29.5181
613 2BME GNP 36.5591
614 1Y3A GDP 37.5
615 1KK1 GNP 38.7991
616 1G7C 5GP 45.9584
617 3WXM GTP 47.1132
618 1SKQ GDP 48.9607
Pocket No.: 2; Query (leader) PDB : 4J0Q; Ligand: GDP; Similar sites found with APoc: 12
This union binding pocket(no: 2) in the query (biounit: 4j0q.bio3) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1PVN MZP 2.12766
2 2J5V PCA 2.45232
3 2CVQ NDP 2.75229
4 1T3D CYS 3.80623
5 4YNU FAD 5.08083
6 4B9E FAH 5.64784
7 3ITJ CIT 6.21302
8 3I54 CMP 6.4257
9 1S7N COA 6.59341
10 2G77 AF3 7.07071
11 5H4S RAM 9.85915
12 1LDN FBP 11.3924
Pocket No.: 3; Query (leader) PDB : 4J0Q; Ligand: GDP; Similar sites found with APoc: 7
This union binding pocket(no: 3) in the query (biounit: 4j0q.bio4) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1ME8 RVP 1.84758
2 5AHO TLA 3.57143
3 3F8K COA 5.625
4 6C0B MLI 6.41026
5 2ZE7 AMP 7.90514
6 6CE2 SVR 10.7438
7 4AF0 IMP 11.3164
Pocket No.: 4; Query (leader) PDB : 4J0Q; Ligand: GDP; Similar sites found with APoc: 5
This union binding pocket(no: 4) in the query (biounit: 4j0q.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 3E7O 35F 1.84758
2 2VOS ADP 1.84758
3 6ECT SAM 3.69515
4 4GN8 ASO 6.92841
5 4M7V RAR 7.42857
Pocket No.: 5; Query (leader) PDB : 4J0Q; Ligand: GDP; Similar sites found with APoc: 5
This union binding pocket(no: 5) in the query (biounit: 4j0q.bio5) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 3TLJ SAH 1.87668
2 1YS4 NAP 1.9774
3 4LHD GLY 2.30947
4 6APV 3L4 3.00231
5 5AHM IMP 5.25
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