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Receptor
PDB id Resolution Class Description Source Keywords
4ITR 2.3 Å EC: 2.7.7.1 CRYSTAL STRUCTURE OF IBPAFIC2-H3717A IN COMPLEX WITH ADENYLY CDC42 HAEMOPHILUS SOMNUS FIC DOMAIN ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE TRA
Ref.: STRUCTURAL BASIS OF FIC-MEDIATED ADENYLYLATION. NAT.STRUCT.MOL.BIOL. V. 17 1004 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SO4 C:204;
D:204;
A:3801;
B:3801;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
GDP D:202;
C:202;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG C:203;
D:203;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
AMP C:201;
D:201;
Invalid;
Invalid;
none;
none;
submit data
347.221 C10 H14 N5 O7 P c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4ITR 2.3 Å EC: 2.7.7.1 CRYSTAL STRUCTURE OF IBPAFIC2-H3717A IN COMPLEX WITH ADENYLY CDC42 HAEMOPHILUS SOMNUS FIC DOMAIN ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE TRA
Ref.: STRUCTURAL BASIS OF FIC-MEDIATED ADENYLYLATION. NAT.STRUCT.MOL.BIOL. V. 17 1004 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 4ITR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 4ITR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 4ITR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4ITR; Ligand: GDP; Similar sites found with APoc: 602
This union binding pocket(no: 1) in the query (biounit: 4itr.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 3MJH GTP 2.38095
2 2XT3 ADP 2.6178
3 1LVK MNT BEF 2.6178
4 4MKF AP5 2.76498
5 4D81 ADP 2.82686
6 3LRE ADP 2.8481
7 1JI0 ATP 2.91667
8 2WIC GNP 2.99625
9 3A1S GDP 3.14136
10 4GBM A3P 3.14136
11 3P4X ADP 3.1477
12 5HR5 ADP 3.16456
13 1NN5 2DT 3.25581
14 1NN5 ANP 3.25581
15 3W5J GDP 3.43137
16 1V8K ANP 3.48101
17 4AG5 ADP 3.48101
18 4KVL PLM 3.48101
19 2D2F ADP 3.6
20 5XKT GNP 3.66492
21 4R98 GNH 3.66492
22 3FKQ ATP 3.66492
23 5XDR ADP 3.66492
24 5H68 AGS 3.66492
25 2IXE ATP 3.66492
26 1NHX FTB 3.66492
27 2GMV UN8 3.66492
28 1NHX PEP 3.66492
29 1OYY AGS 3.66492
30 3B5J 12D 3.66492
31 1OXV ANP 3.66492
32 2GMV PEP 3.66492
33 1JJ7 ADP 3.66492
34 3ITJ CIT 3.66492
35 2GWH A3P 3.69128
36 1SVK ALF GDP 3.79747
37 5MZN ADP 3.79747
38 1BG2 ADP 3.79747
39 1IN4 ADP 3.79747
40 6FMC DUE 3.79747
41 5U32 GDP 3.81356
42 2RGX AP5 3.8835
43 5WRJ A3P 3.9604
44 2QG6 NMN 4.0201
45 4JLV ADP 4.08922
46 2XAU ADP 4.11392
47 3FYH ADP 4.11392
48 1SKQ GDP 4.18848
49 5GOE GDP 4.18848
50 3CNL GNP 4.18848
51 3T1O GDP 4.18848
52 2IYL GDP 4.18848
53 2BIF SIN 4.18848
54 2BIF ANP 4.18848
55 1K6M AGS 4.18848
56 2QEN ADP 4.18848
57 2O0J ADP 4.18848
58 3NHB ADP 4.18848
59 1G8S MET 4.18848
60 2ZPT A3P 4.18848
61 3QXC ATP 4.18848
62 4Q1A UDP 4.28571
63 4Q1A 2XZ 4.28571
64 4UP4 GAL NAG 4.43038
65 1W5T ANP 4.43038
66 1W5T ADP 4.43038
67 5H7J GCP 4.71204
68 5L3W GDP 4.71204
69 3E70 GDP 4.71204
70 3DZD ADP 4.71204
71 1ZUI SKM 4.71204
72 5LTJ ADP 4.71204
73 4GOX A3P 4.71204
74 3Q9L ATP 4.71204
75 4PX9 ADP 4.71204
76 3BFX A3P 4.71204
77 6FAA ADP 4.74684
78 5VHC BEF ADP 4.74684
79 6B8B ADP 4.81928
80 1FP6 ADP 4.84429
81 1SQ5 ADP 4.87013
82 5J1S ATP 4.87805
83 1DAK DPU 4.91071
84 1DAK ADP 4.91071
85 2GDJ ANP 4.92424
86 5MVR ADP 4.93827
87 3LN9 FLC 5.03597
88 4NE2 SH2 5.06329
89 4NE2 ADP 5.06329
90 2XTN GTP 5.12821
91 2B99 RDL 5.12821
92 1D2N ANP 5.14706
93 4NON GDP 5.2356
94 5H7K GDP 5.2356
95 2OBM ADP 5.2356
96 1IHU ADP 5.2356
97 1IHU AF3 5.2356
98 4LYA ATP 5.2356
99 1G6O ADP 5.2356
100 1F9V ADP 5.2356
101 5IRN ADP 5.2356
102 2OFW ADX 5.2356
103 3HU3 AGS 5.2356
104 5IFS ADP 5.2356
105 1AKY AP5 5.2356
106 1G3Q ADP 5.2356
107 2ORV 4TA 5.2356
108 1RJ9 GCP 5.26316
109 1ION ADP 5.34979
110 5L3V GDP 5.35117
111 5CK5 GDP 5.37975
112 6B4K ANP 5.37975
113 1YTM ATP 5.37975
114 2AWN ADP 5.37975
115 1ZIN AP5 5.52995
116 5ZBR ANP 5.6
117 1M7G AV2 5.6872
118 1M7G ADX 5.6872
119 1M7G ADP 5.6872
120 5ZXD ATP 5.6962
121 1KO8 6PG 5.71429
122 4RD0 GDP 5.75916
123 3MD0 GDP 5.75916
124 4HSE ADP 5.75916
125 1OS1 ATP 5.75916
126 1OS1 PYR 5.75916
127 4FRZ ADP 5.75916
128 4R43 GDP 5.75916
129 5ZB0 ADP 5.75916
130 5ZB0 TYD 5.75916
131 5LB3 ADP 5.75916
132 3BOS CDP 5.75916
133 4WZ6 ATP 5.75916
134 1R0X ATP 5.75916
135 5J1J ANP 5.96491
136 2ZFI ADP 6.01266
137 5VGR GDP 6.01266
138 3EZ2 ADP 6.01266
139 2OZE AGS 6.04027
140 5UIV ADP 6.1674
141 3COB ADP 6.28272
142 4RZ3 ADP 6.28272
143 4V03 ADP 6.28272
144 5I34 GDP 6.28272
145 1LVG ADP 6.28272
146 5M7P ADP 6.28272
147 1XMV ADP 6.28272
148 1XP8 AGS 6.28272
149 1NST A3P 6.28272
150 2ZPA ADP 6.32911
151 4YMU ATP 6.36364
152 1VHT BA3 6.42202
153 3A4M ADP 6.53846
154 2PZE ATP 6.55022
155 2WOJ ADP ALF 6.64557
156 5YV5 ADP 6.64557
157 1YQT ADP 6.64557
158 2YOH WMJ 6.66667
159 3TK1 GDP 6.80628
160 3T34 GDP 6.80628
161 5BN3 ADP 6.80628
162 5K5Z ANP 6.80628
163 2BEK ATP 6.80628
164 1GOJ ADP 6.80628
165 5FHD ADP ALF 6.80628
166 4U00 ADP 6.80628
167 3IUY AMP 6.80628
168 5FTB ANP 6.80628
169 3QVV A3P 6.80628
170 3QVV 3QV 6.80628
171 3R7F CP 6.80628
172 2X7I CIT 6.81818
173 5XQL C2E 6.87285
174 1HTW ADP 6.96203
175 3FWY ADP 7.00637
176 6AIC AMP 7.00935
177 3WYA GDP 7.27848
178 3WY9 GDP 7.27848
179 2XTZ GSP 7.27848
180 4LC1 GDP 7.27848
181 1VKJ A3P 7.27848
182 2C78 GNP 7.32984
183 1TAD ALF 7.32984
184 1TAD GDP 7.32984
185 4H1V GNP 7.32984
186 3ZQ6 ADP ALF 7.32984
187 1X6V ADP 7.32984
188 4X8O AP5 7.32984
189 2GKS ADP 7.32984
190 1QF5 RPL 7.32984
191 1QF5 GDP 7.32984
192 5G3Y ADP 7.32984
193 1G6H ADP 7.32984
194 4A4Z ANP 7.32984
195 4YJ1 ADP 7.32984
196 4PJ3 ANP 7.32984
197 3UYW TAU 7.32984
198 3BER AMP 7.32984
199 1Q20 A3P 7.32984
200 1Q20 PLO 7.32984
201 4IEE AGS 7.32984
202 4BQS ADP 7.38636
203 4BQS K2Q 7.38636
204 1GPJ CIT 7.42574
205 1G7C 5GP 7.44681
206 3FVQ ATP 7.59494
207 4IOK ADP 7.59494
208 5L3S GNP 7.77027
209 1D2E GDP 7.8534
210 1KK1 GNP 7.8534
211 4NU0 AP5 7.8534
212 4BFW ZVW 7.8534
213 1L2T ATP 7.8534
214 4PPF FLC 7.8534
215 1Y3A GDP 7.91139
216 2WHX ADP 7.91139
217 2OM2 GDP 7.91139
218 3DC4 ADP 7.91139
219 2JLR ANP 7.91139
220 1BH2 GSP 7.93651
221 2ZTS ADP 7.96813
222 1WF3 GNP 7.97342
223 1K4M CIT 7.98122
224 4OHY ANP 8.22785
225 3EWA ANP 8.22785
226 3TMK T5A 8.33333
227 2OG2 MLI 8.37696
228 5W7Q GDP 8.37696
229 3B9Q MLI 8.37696
230 3EC1 GDP 8.37696
231 4HI0 GDP 8.37696
232 5L3R GCP 8.37696
233 2QZ4 ADP 8.37696
234 2ZR9 DTP 8.37696
235 3FB4 AP5 8.37696
236 2DPY ADP 8.37696
237 4QOS ADP 8.37696
238 2JK0 ASP 8.37696
239 3AKI AH8 8.37696
240 3UIE ANP 8.5
241 2ZJ5 ADP 8.5443
242 3K5I AIR 8.5443
243 5H67 ATP 8.75
244 4J0Q GDP 8.86076
245 4P4T GDP 8.86076
246 1FQK GDP 8.86076
247 4IHQ ADP 8.86076
248 1FQK ALF 8.86076
249 1DAR GDP 8.90052
250 4KVA GTP 8.90052
251 3B7G ANP 8.90052
252 5TIV A3P 8.90052
253 4ZNL BEF ADP 9.12409
254 1UJ2 ADP 9.12698
255 1UJ2 C5P 9.12698
256 1IWE IMP 9.17722
257 2CE7 ADP 9.17722
258 1R6B ADP 9.17722
259 6G14 G4P 9.42408
260 4LPS GDP 9.42408
261 6A20 ADP 9.42408
262 2VB6 ADP BEF 9.42408
263 4PFO ADP 9.42408
264 3RLF ANP 9.42408
265 2IS6 ADP 9.42408
266 5Y6N ADP 9.42408
267 1QF9 C5P 9.42408
268 1QF9 ADP 9.42408
269 1QF9 ALF 9.42408
270 2I4I AMP 9.42408
271 1XX6 ADP 9.42408
272 2XZ9 PYR 9.42408
273 2PEZ DAT 9.49721
274 2PEZ GGZ 9.49721
275 2WJG GDP 9.57447
276 4E03 ADP 9.70874
277 3DKP ADP 9.79592
278 5GVR LMR 9.82906
279 6CRK GDP 9.85915
280 1GP2 GDP 9.85915
281 6CS8 F9Y 9.90099
282 2ODE ALF GDP 9.92908
283 5W75 GDP 9.94764
284 1W0J ADP 9.94764
285 2CK3 ANP 9.94764
286 1F5N GNP 9.94764
287 2CK3 ADP 9.94764
288 2B8W ALF 5GP 9.94764
289 1G41 ADP 9.94764
290 1W0J ADP BEF 9.94764
291 3RC3 ANP 9.94764
292 1U0J ADP 9.94764
293 1NJF ADP 10
294 3IIJ ADP 10
295 1NJF AGS 10
296 1NRJ GTP 10.0917
297 1BO4 COA 10.119
298 3CX8 GSP 10.1266
299 3AB3 GDP 10.1266
300 1ZCB GDP 10.1266
301 1SVM ATP 10.1266
302 2P3V SRT 10.1266
303 4XVU ATP 10.1382
304 4XTR ADP 10.1382
305 4XTR ATP 10.1382
306 4WOP CTP 10.2222
307 3KJI ADP 10.2362
308 2QQ0 ANP 10.3261
309 2QQ0 THM 10.3261
310 2QQ0 TMP 10.3261
311 2QQ0 ADP 10.3261
312 5EXT ADP 10.3846
313 5I0H ADP BEF 10.443
314 1U1I NAD 10.443
315 1SVI GDP 10.4712
316 2HCJ GDP 10.4712
317 3U6K GDP 10.4712
318 1D8T GDP 10.4712
319 4G5G GDP 10.4712
320 5JBQ GDP 10.4712
321 3U6B GDP 10.4712
322 2BVN GNP 10.4712
323 4PC3 GDP 10.4712
324 4KBF AMP 10.4712
325 1XKV ATP 10.4712
326 6H5E ANP 10.4712
327 3ZS9 ADP ALF 10.5263
328 3BFV ADP 10.7011
329 1P72 ADP 10.7595
330 2GOO NDG 10.7843
331 2W58 ADP 10.8911
332 1B7T ADP 10.8974
333 4YDS ATP 10.9649
334 4KFU ACP 10.9948
335 2Q2Y ADP 10.9948
336 2Q2Y MKR 10.9948
337 2Y65 ADP 10.9948
338 4XGU ADP 10.9948
339 5Z69 AGS 10.9948
340 4R2I ANP 10.9948
341 3T12 GDP ALF 11.0294
342 1KK8 BEF ADP 11.039
343 6DEF GCP 11.0759
344 5WC2 ADP 11.0759
345 5BQ5 ADP BEF 11.1111
346 2PL3 ADP 11.4407
347 5AK0 8V1 11.5183
348 2GK6 ADP 11.5183
349 4TL6 ANP 11.5183
350 2Z5F A3P 11.5183
351 3MWL 8OX 11.5942
352 4IDN GNP 11.7089
353 4DCT GDP 12.0419
354 1TQ4 GDP 12.0419
355 3VMF GTP 12.0419
356 3WXM GTP 12.0419
357 3VX3 ADP 12.0419
358 4ZG4 VO4 ADP 12.0419
359 4TTQ ATP 12.0419
360 1OFH ADP 12.069
361 4QM7 GTP 12.2807
362 2FNA ADP 12.3418
363 2D7D ADP 12.3418
364 4KAX GTP 12.4224
365 2NCD ADP 12.5654
366 1RRC ADP 12.5654
367 1T5C ADP 12.9747
368 1CS4 GSP 13.089
369 5IRR GSP 13.089
370 4WZA ACP 13.089
371 4WZA ADP 13.089
372 4CVN ADP 13.089
373 5BYK OAQ 13.1274
374 5BYK A3P 13.1274
375 3KTA AP5 13.1868
376 4ZKD GDP 13.2911
377 2CDN ADP 13.4328
378 3PQC GDP 13.6126
379 1Z6T ADP 13.6126
380 3H86 AP5 13.6126
381 2V7Q ATP 13.6364
382 2V7Q ADP 13.6364
383 4DDY DN6 13.6882
384 5X40 ACP 13.6986
385 1XEX ATP 13.7363
386 4OI4 ATP 13.913
387 5EE5 GTP 14.0351
388 3H4S ADP 14.0741
389 6AU6 GDP 14.1361
390 2HF9 GSP 14.1361
391 1WDT GTP 14.1361
392 2C9O ADP 14.1361
393 1JJV ATP 14.1361
394 1FQJ GDP 14.2857
395 1FQJ ALF 14.2857
396 1KSH GDP 14.5161
397 5HCN GCP 14.557
398 3DOE GTP 14.5833
399 5YT0 GDP 14.6597
400 4B47 GDP 14.6597
401 1H65 GDP 14.6597
402 1E2K TMC 14.6597
403 5TSH ANP 14.6597
404 5TSH ADP 14.6597
405 1CR1 TTP 14.6597
406 1B0U ATP 14.8855
407 5FG3 GDP 15.1832
408 1PUJ GNP 15.1832
409 1G7S GDP 15.1832
410 5N69 ADP 15.1832
411 1P9B GDP 15.1832
412 6C90 ADP 15.3846
413 1ZD9 GDP 15.4255
414 1NY5 ADP 15.5063
415 2RCN GDP 15.7068
416 1YRB GDP 15.7068
417 3DEF GDP 15.7068
418 1FNN ADP 15.7068
419 2FSH ANP 15.7068
420 1G3M A3P 15.7068
421 1G3M PCQ 15.7068
422 1Z83 AP5 15.8163
423 4TMZ GSP 16.2304
424 4NCN GTP 16.2304
425 4LJ9 ACP 16.2304
426 4FCW ADP 16.2304
427 3TBK ANP 16.2304
428 1UKZ ADP 16.2562
429 2FH5 GTP 16.3551
430 4ZDJ UTP 16.4557
431 5G41 AP5 16.5919
432 5M04 GDP 16.7539
433 3ZIA ATP 16.7539
434 3ZIA ADP 16.7539
435 1S3G AP5 16.7539
436 4P3Y GDP 17.033
437 2X77 GDP 17.4603
438 2WJH GDP 17.4699
439 2WJH FLC 17.4699
440 5KDO GDP 17.5676
441 1MR3 G3D 17.6796
442 1MKY GDP 17.801
443 2FAH GDP 17.801
444 4MKG AP5 17.801
445 2J5V PCA 17.801
446 1GOT GDP 17.8082
447 4M9Q GNP 18.3246
448 4YS0 ADP 18.3246
449 3AQ4 GDP 18.4783
450 2C77 GNP 18.8482
451 5W76 GDP 19.3717
452 3QKT ANP 19.3717
453 2CHG ANP 19.3717
454 2VWA PTY 19.802
455 4BAS GNP 19.8953
456 2CBZ ATP 19.8953
457 2VVG ADP 20.4188
458 5DI3 GNP 20.5405
459 1Y63 ADP 20.6522
460 2W83 GTP 20.7792
461 1AQU A3P 21.8855
462 3ZFD ANP 21.9895
463 3QF7 ANP 22
464 1F2U ATP 22.2973
465 1ZJ6 G3D 22.5131
466 2KIN ADP 23
467 5KSZ GCP 24.6073
468 5KSP GDP 24.7368
469 5KUT GDP 24.8677
470 1J2J GTP 26.506
471 2J59 GTP 26.506
472 1O3Y GTP 26.506
473 4YLG GDP 26.5896
474 1UPT GTP 26.6667
475 1RE0 GDP 26.8293
476 1S9D GDP 26.8293
477 2QN6 GDP 26.8817
478 2VOH CIT 26.9231
479 1NME 159 27.1739
480 1W7J ADP BEF 27.8146
481 2GJ8 ALF GDP 27.907
482 4V0K GDP 28.9941
483 3Q72 GNP 30.1205
484 1Z06 GNP 31.2169
485 3IO3 ADP 31.6456
486 1OIX GDP 31.9372
487 1M2O GNP 32.1053
488 1OIV GDP 32.4607
489 2F9L GDP 32.9843
490 1R4A GNP 33.3333
491 2A5F GTP 34.2857
492 1F6B GDP 34.555
493 5JCZ GDP 34.6369
494 3E5H GNP 34.8315
495 4LX0 BEF GDP 35.0282
496 3WYF GTP 35.0785
497 3M1I GTP 35.0785
498 3GJX GTP 35.0785
499 3GJ4 GDP 35.0785
500 3GJ7 GDP 35.0785
501 3GJ8 GDP 35.0785
502 3GJ5 GDP 35.0785
503 1GXU 2HP 35.1648
504 4ZI2 GNP 35.2632
505 4GOJ GNP 35.4497
506 2HV8 GTP 35.4651
507 5DIF GNP 35.6021
508 5UWU GNP 35.6021
509 5UWW GNP 35.6021
510 5UWP GNP 35.6021
511 5UWO GNP 35.6021
512 1IBR GNP 35.6021
513 6CIT GNP 35.6021
514 5UWI GNP 35.6021
515 5UWQ GNP 35.6021
516 5UWJ GNP 35.6021
517 1VG0 GDP 35.6021
518 4HAT GNP 35.6021
519 5DHF GNP 35.6021
520 5UWR GNP 35.6021
521 5UWS GNP 35.6021
522 5UWH GNP 35.6021
523 5UWT GNP 35.6021
524 5DI9 GNP 35.6021
525 1VG8 GNP 35.6021
526 5BXQ GDP 35.6021
527 3GJ0 GDP 35.6021
528 3CH5 GDP 35.6021
529 3GJ3 GDP 35.6021
530 3PCR GTP 35.8025
531 4C4P GNP 35.8382
532 2G77 GDP 36.1257
533 1YZG GDP 36.3129
534 2D7C GTP 36.5269
535 2QTV GNP 36.5269
536 1VG9 GDP 36.7568
537 1VG1 GDP 36.7568
538 3WYG GTP 36.8132
539 1FZQ GDP 37.0166
540 3N5C GDP 37.037
541 5OEC GDP 37.1585
542 5Z2M GTP 38.0682
543 2ZEJ GDP 38.587
544 1WA5 GTP 38.6364
545 1KAO GDP 39.521
546 2A5J GDP 39.7906
547 2CJW GDP 39.7906
548 3BC1 GNP 40.3141
549 1Z2A GDP 40.4762
550 3CPJ GDP 41.8848
551 2HT6 GDP 42.5287
552 3RWO GDP 42.7027
553 3TKL GTP 42.9319
554 1TU3 GNP 43.2749
555 2A9K GDP 43.3155
556 1R2Q GNP 43.5294
557 1Z0K GTP 43.6047
558 2EFE GNH 43.6464
559 1Z0A GDP 43.6782
560 3Q85 GNP 43.787
561 2EW1 GNP 43.9791
562 5SZH GNP 43.9791
563 2BME GNP 44.086
564 5OCG GNP 44.4444
565 3SFV GDP 44.7514
566 1X1R GDP 44.9438
567 5UQW GDP 44.9735
568 5XC5 GTP 45.4545
569 1ZC3 GNP 45.7143
570 5TAR GDP 45.9459
571 5TB5 GDP 45.9459
572 2BCG GDP 46.0733
573 1UAD GNP 46.2857
574 4DKX GDP 46.5969
575 5O74 GDP 46.6667
576 5WDR GNP 46.7836
577 1Z0J GTP 47.0588
578 5LEF GTP 47.1204
579 3RAB GNP 47.3373
580 1Z0F GDP 47.486
581 3T5G GDP 47.5138
582 1D5C GDP 47.5309
583 1YZN GNP 47.5676
584 1EK0 GNP 47.6471
585 1YVD GNP 47.929
586 4D0G GTP 48
587 3NKV GNP 48
588 4KVG GTP 48.2143
589 1G16 GDP 48.2353
590 6BSX GDP 48.3146
591 6BSX E7S 48.3146
592 3X1Z GNP 48.503
593 4HDQ GNP 48.503
594 4HDO GNP 48.503
595 1GUA GNP 48.503
596 2C5L GTP 48.5549
597 2Y8E GNP 48.6034
598 4K81 GTP 49.1228
599 6FA4 GNP 49.1329
600 4LHW GNP 49.4253
601 3QBT GNP 49.4253
602 3TNF GNP 49.4253
603 1U8Z GDP 50
Pocket No.: 2; Query (leader) PDB : 4ITR; Ligand: GDP; Similar sites found with APoc: 24
This union binding pocket(no: 2) in the query (biounit: 4itr.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 2VWT PYR 2.62172
2 5HWV MBN 3.07692
3 1VJ7 GPX 3.79747
4 5WRI A3P 3.79747
5 2XOC ADE 4.21456
6 5LTJ BEF 4.71204
7 1W4R TTP 5.2356
8 1TE2 PGA 5.2356
9 2B8T THM 5.38117
10 2WZF BGC 5.75916
11 3WMX THR 5.75916
12 2ZE7 DST 5.92885
13 1U18 HSM 5.94595
14 3L6C MLI 6.78466
15 1T8U A3P 6.98529
16 1T8U UAP SGN IDS SGN 6.98529
17 4P86 5GP 7.10383
18 5J32 IPM 7.32984
19 4IOK XPO 7.59494
20 3Q8G PEE 8.75
21 5FII PHE 8.82353
22 5NM7 GLY 13.1579
23 5E5U MLI 16.2304
24 1QHH ATP 36.5217
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