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Receptor
PDB id Resolution Class Description Source Keywords
4HI0 2.35 Å EC: 2.-.-.- CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREASE ACCESSORY PR UREF/H/G COMPLEX HELICOBACTER PYLORI METALLOCHAPERONE METAL BINDING PROTEIN UREASE CYTOSOL
Ref.: STRUCTURE OF UREG/UREF/UREH COMPLEX REVEALS HOW URE ACCESSORY PROTEINS FACILITATE MATURATION OF HELICOB PYLORI UREASE. PLOS BIOL. V. 11 01678 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP E:201;
F:201;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4HI0 2.35 Å EC: 2.-.-.- CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREASE ACCESSORY PR UREF/H/G COMPLEX HELICOBACTER PYLORI METALLOCHAPERONE METAL BINDING PROTEIN UREASE CYTOSOL
Ref.: STRUCTURE OF UREG/UREF/UREH COMPLEX REVEALS HOW URE ACCESSORY PROTEINS FACILITATE MATURATION OF HELICOB PYLORI UREASE. PLOS BIOL. V. 11 01678 2013
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 269 families.
1 4HI0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 237 families.
1 4HI0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 187 families.
1 4HI0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4HI0; Ligand: GDP; Similar sites found with APoc: 716
This union binding pocket(no: 1) in the query (biounit: 4hi0.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 5FTB ANP 2.51256
2 5FHD ADP ALF 2.51256
3 6AU6 GDP 2.64151
4 5IRR GSP 2.64151
5 5GVR LMR 2.99145
6 3BER AMP 3.01508
7 3DEF GDP 3.51759
8 1RYH GNP 3.51759
9 1NJF ADP 3.6
10 1NJF AGS 3.6
11 4XFR CIT 3.74707
12 2BME GNP 3.76344
13 4Z7X 3CX 3.78151
14 3IUY AMP 3.94737
15 1ZIN AP5 4.0201
16 3UIE ANP 4.0201
17 2ZTS ADP 4.0201
18 4NU0 AP5 4.14747
19 2NCD ADP 4.15094
20 5WRJ A3P 4.15094
21 1KAO GDP 4.19162
22 3UYW TAU 4.20561
23 1O3Y GTP 4.21687
24 4R2I ANP 4.28571
25 1YZN GNP 4.32432
26 1XMV ADP 4.33071
27 5EXT ADP 4.33071
28 2ZJ5 ADP 4.33071
29 3QDK QDK 4.33071
30 2QQ0 ANP 4.34783
31 2QQ0 THM 4.34783
32 2QQ0 ADP 4.34783
33 2QQ0 TMP 4.34783
34 5A89 FMN 4.48718
35 4PPF FLC 4.52261
36 1JI0 ATP 4.52261
37 2XTN GTP 4.52261
38 2ZR9 DTP 4.52261
39 1WF3 GNP 4.52261
40 2J5V PCA 4.52261
41 5WRI A3P 4.52261
42 3TMK T5A 4.52261
43 2VWT PYR 4.5283
44 4CVN ADP 4.71204
45 2BCG GDP 4.72441
46 3SBD GNP 4.81283
47 1BH2 GSP 4.90566
48 1Y3A GDP 4.90566
49 1SVK ALF GDP 4.90566
50 1D8C GLV 4.90566
51 5MZN ADP 4.90566
52 3IIJ ADP 5
53 1RE0 GDP 5.02513
54 5G41 AP5 5.02513
55 6B4K ANP 5.02513
56 1SVM ATP 5.02513
57 5VGR GDP 5.02513
58 6B8B ADP 5.02513
59 4TL6 ANP 5.02513
60 6BSX GDP 5.05618
61 6BSX E7S 5.05618
62 1S8F GDP 5.08475
63 2ZPA ADP 5.11811
64 4ZG4 VO4 ADP 5.11811
65 2B8W ALF 5GP 5.11811
66 4KFU ACP 5.18868
67 1E96 GTP 5.20833
68 1M7G AV2 5.21327
69 1M7G ADP 5.21327
70 1M7G ADX 5.21327
71 2FJU GSP 5.28302
72 3FKQ ATP 5.28302
73 1IWE IMP 5.28302
74 2CXG GLC GLC 5.28302
75 1GWN GTP 5.36585
76 1MH1 GNP 5.37634
77 1FHX 4IP 5.42636
78 2XT3 ADP 5.51181
79 2FAH GDP 5.51181
80 5XDR ADP 5.51181
81 4ZNL BEF ADP 5.51181
82 3CNL GNP 5.52764
83 2PZE ATP 5.52764
84 1R0X ATP 5.52764
85 3FWY ADP 5.52764
86 2QZ4 ADP 5.52764
87 3FB4 AP5 5.52764
88 4YMU ATP 5.52764
89 2BEK ATP 5.52764
90 1K6M AGS 5.52764
91 5X40 ACP 5.52764
92 3RKR NAP 5.52764
93 1P3D ANP 5.52764
94 1GQY ACP 5.52764
95 5MVR ADP 5.55556
96 6FTB M0E 5.71429
97 1ION ADP 5.76132
98 1ZD9 GDP 5.85106
99 1EK0 GNP 5.88235
100 4PX9 ADP 5.90551
101 3CV2 OXL 5.90551
102 5LLB 6YZ 5.90551
103 2EW1 GNP 5.97015
104 1M7B GTP 5.97826
105 5CK5 GDP 6.03015
106 4R98 GNH 6.03015
107 3W5J GDP 6.03015
108 2CE7 ADP 6.03015
109 1WDT GTP 6.03015
110 6DEF GCP 6.03015
111 3BOS CDP 6.03015
112 5H68 AGS 6.03015
113 1ZX5 LFR 6.03015
114 2C77 GNP 6.03774
115 2C78 GNP 6.03774
116 4PFO ADP 6.03774
117 3R7F CP 6.03774
118 5O74 GDP 6.11111
119 3NKV GNP 6.28571
120 1XKV ATP 6.29921
121 3Q9L ATP 6.29921
122 2JJK R15 6.41509
123 3KC1 2T6 6.41509
124 1P72 ADP 6.41509
125 1TU3 GNP 6.43275
126 4QM7 GTP 6.43275
127 1R2Q GNP 6.47059
128 2VVG ADP 6.53266
129 5ZXD ATP 6.53266
130 3B5J 12D 6.53266
131 5M04 GDP 6.53266
132 1V8K ANP 6.53266
133 2IS6 ADP 6.53266
134 3ZQ6 ADP ALF 6.53266
135 2OBM ADP 6.53266
136 5AK0 8V1 6.53266
137 3ITJ CIT 6.53266
138 5ZI9 FLC 6.53266
139 2J59 GTP 6.54762
140 1SVI GDP 6.66667
141 1RRC ADP 6.69291
142 4D52 GXL 6.69291
143 4PJ3 ANP 6.69291
144 5OCQ CIT 6.69291
145 1P7T PYR 6.69291
146 3VM7 GLC 6.69291
147 1Z0F GDP 6.70391
148 1FP6 ADP 6.79245
149 2OZE AGS 6.79245
150 5I34 GDP 6.79245
151 1XP8 AGS 6.79245
152 3BFX A3P 6.79245
153 2D2F ADP 6.8
154 2A5J GDP 6.80628
155 1Z0A GDP 6.89655
156 4LHW GNP 6.89655
157 3SFV GDP 7.03518
158 4H1V GNP 7.03518
159 4P4T GDP 7.03518
160 4D81 ADP 7.03518
161 4MKF AP5 7.03518
162 1YTM ATP 7.03518
163 2F3R G5P 7.03518
164 6G14 G4P 7.08661
165 5LB3 ADP 7.08661
166 5H4S RAM 7.08661
167 5Z69 AGS 7.08661
168 4V0K GDP 7.10059
169 1H65 GDP 7.16981
170 1G41 ADP 7.16981
171 3TBK ANP 7.16981
172 3T5G GDP 7.18232
173 4JLS 3ZE 7.23684
174 3GJ8 GDP 7.23982
175 1DS6 GDP 7.29167
176 3E5H GNP 7.30337
177 1NN5 2DT 7.44186
178 1NN5 ANP 7.44186
179 2WJG GDP 7.44681
180 3TNF GNP 7.47126
181 2FH5 GTP 7.47664
182 1G4U GDP 7.48031
183 4HSE ADP 7.48031
184 3P4X ADP 7.48031
185 1OS1 ATP 7.48031
186 1OS1 PYR 7.48031
187 2CHG ANP 7.52212
188 5W7Q GDP 7.53769
189 1T5C ADP 7.53769
190 1F9V ADP 7.53769
191 3EC1 GDP 7.53769
192 4RD0 GDP 7.53769
193 4M9Q GNP 7.53769
194 1G6O ADP 7.53769
195 4IHQ ADP 7.53769
196 5WC2 ADP 7.53769
197 3IO3 ADP 7.53769
198 2WKQ GTP 7.53769
199 1QF5 GDP 7.53769
200 1QF5 RPL 7.53769
201 2IXE ATP 7.53769
202 4IDN GNP 7.53769
203 2R09 4IP 7.53769
204 2R0D 4IP 7.53769
205 2RCN GDP 7.54717
206 5K5Z ANP 7.54717
207 3QVV A3P 7.54717
208 3QVV 3QV 7.54717
209 2W2X GSP 7.56757
210 4WEI GLC GAL 7.58123
211 1GXU 2HP 7.69231
212 1QF9 ADP 7.73196
213 1QF9 ALF 7.73196
214 1QF9 C5P 7.73196
215 1Z2A GDP 7.7381
216 2PEZ GGZ 7.82123
217 2PEZ DAT 7.82123
218 5Y6N ADP 7.87402
219 2ZE7 DST 7.90514
220 2ZE7 AMP 7.90514
221 3LN9 FLC 7.91367
222 6DZN AE3 7.98122
223 5W75 GDP 8.0402
224 3CPJ GDP 8.0402
225 2XTZ GSP 8.0402
226 4X8O AP5 8.0402
227 1Z6T ADP 8.0402
228 5W75 SUC 8.0402
229 1W5T ADP 8.0402
230 1W5T ANP 8.0402
231 1NST A3P 8.0402
232 4LHD GLY 8.0402
233 2O0J ADP 8.0402
234 4Y4V DAL 8.0402
235 2GWH A3P 8.0402
236 1F6B GDP 8.08081
237 5OEC GDP 8.12183
238 1KK1 GNP 8.26772
239 1OXV ANP 8.26772
240 1D2E GDP 8.26772
241 2GK6 ADP 8.26772
242 2GKS ADP 8.26772
243 1G3M PCQ 8.26772
244 1G3M A3P 8.26772
245 4KBF AMP 8.26772
246 4KAX GTP 8.28402
247 4KAX 4IP 8.28402
248 3H86 AP5 8.33333
249 4ITR GDP 8.37696
250 1A4R GNH 8.37696
251 1GRN GDP 8.37696
252 1A4R GDP 8.37696
253 2NGR GDP 8.37696
254 2D7C GTP 8.38323
255 5KSP GDP 8.42105
256 2WMO GTP 8.42105
257 2WJH FLC 8.43373
258 2WJH GDP 8.43373
259 3ZS9 ADP ALF 8.47458
260 2WOJ ADP ALF 8.47458
261 4P3Y GDP 8.54271
262 3U6B GDP 8.54271
263 5JBQ GDP 8.54271
264 1D8T GDP 8.54271
265 3U6K GDP 8.54271
266 1BG2 ADP 8.54271
267 5GOE GDP 8.54271
268 4PC3 GDP 8.54271
269 3CX8 GSP 8.54271
270 2BVN GNP 8.54271
271 2J0V GDP 8.54271
272 1ZCB GDP 8.54271
273 2WHX ADP 8.54271
274 4G5G GDP 8.54271
275 2PL3 ADP 8.54271
276 4MKG AP5 8.54271
277 1OE0 TTP 8.54271
278 1D6Z HY1 8.54271
279 3HQ9 OXL 8.54271
280 2YOH WMJ 8.57143
281 1LVG ADP 8.58586
282 5ZB0 TYD 8.58586
283 5ZB0 ADP 8.58586
284 3N5C GDP 8.64198
285 1IN4 ADP 8.66142
286 1YXM ADE 8.66142
287 1QHG ATP 8.66142
288 3AB4 THR 8.66142
289 4JGT PYR 8.66142
290 4C12 ADP 8.66142
291 5KSZ GCP 8.67924
292 1Q19 SSC 8.67924
293 3B7G ANP 8.69565
294 1NRJ GTP 8.7156
295 3PQC GDP 8.71795
296 1UJ2 ADP 8.73016
297 1UJ2 C5P 8.73016
298 1S3G AP5 8.75576
299 5WDR GNP 8.77193
300 4YC7 GNP 8.83978
301 3VX3 ADP 8.87097
302 1HE1 GDP 8.88889
303 1Z06 GNP 8.99471
304 4CS9 AMP 8.99471
305 2ZFI ADP 9.01639
306 1GOJ ADP 9.04523
307 2A9K GDP 9.04523
308 4AG5 ADP 9.04523
309 1FNN ADP 9.04523
310 3BFV ADP 9.04523
311 3QXC ATP 9.04523
312 2Z5F A3P 9.04523
313 2ZPT A3P 9.04523
314 4A4Z ANP 9.04523
315 2ORV 4TA 9.04523
316 4QDI ATP 9.04523
317 4V03 ADP 9.05512
318 1X6V ADP 9.05512
319 1PUJ GNP 9.0566
320 1W0J ADP 9.0566
321 1W0J ADP BEF 9.0566
322 1T3D CYS 9.0566
323 1Z83 AP5 9.18367
324 1W4R TTP 9.23077
325 4UXH T5A 9.23913
326 2JAQ DCP 9.26829
327 4TTQ ATP 9.30233
328 1KK8 BEF ADP 9.35252
329 5EP2 AZU 9.375
330 4TMK T5A 9.38967
331 5LTJ BEF 9.43396
332 5LTJ ADP 9.43396
333 3COB ADP 9.44882
334 1SQ5 ADP 9.44882
335 5M7P ADP 9.44882
336 4QOS ADP 9.44882
337 1W7J ADP BEF 9.44882
338 1E2K TMC 9.44882
339 4FRZ ADP 9.44882
340 5HR5 ADP 9.44882
341 3GJ0 GDP 9.54774
342 1JJ7 ADP 9.54774
343 5BXQ GDP 9.54774
344 3CH5 GDP 9.54774
345 5UWH GNP 9.54774
346 6CIT GNP 9.54774
347 5UWP GNP 9.54774
348 5UWS GNP 9.54774
349 4HAT GNP 9.54774
350 5UWU GNP 9.54774
351 5UWO GNP 9.54774
352 5UWT GNP 9.54774
353 5DHF GNP 9.54774
354 5UWQ GNP 9.54774
355 5UWI GNP 9.54774
356 5DIF GNP 9.54774
357 5UWR GNP 9.54774
358 5UWW GNP 9.54774
359 5UWJ GNP 9.54774
360 3GJX GTP 9.54774
361 5DI9 GNP 9.54774
362 1U0J ADP 9.54774
363 4OI4 ATP 9.56522
364 1GOT GDP 9.58904
365 1B7T ADP 9.61539
366 2ZEJ GDP 9.78261
367 5J1J ANP 9.81132
368 3KTA AP5 9.82659
369 4OHY ANP 9.84252
370 1F5N GNP 9.84252
371 1XEX ATP 9.88372
372 1G16 GDP 10
373 4ZI2 GNP 10
374 1Z08 GNP 10
375 4J0Q GDP 10.0503
376 5YT0 GDP 10.0503
377 5FG3 GDP 10.0503
378 3EWA ANP 10.0503
379 4XTR ATP 10.0503
380 4XVU ATP 10.0503
381 4XTR ADP 10.0503
382 1JJV ATP 10.0503
383 2GDJ ANP 10.0503
384 3FYH ADP 10.0503
385 3QKT ANP 10.0503
386 4GOJ GNP 10.0529
387 5BQ5 ADP BEF 10.0529
388 3TKL GTP 10.1887
389 1L2T ATP 10.2128
390 5I0H ADP BEF 10.2362
391 1P9B GDP 10.2362
392 3FVQ ATP 10.2362
393 5UPK GNP 10.2703
394 1UAD GNP 10.2857
395 2HT6 GDP 10.3448
396 2CJW GDP 10.4167
397 1XX6 ADP 10.4712
398 4QRH 0O2 10.4762
399 1FZQ GDP 10.4972
400 6A20 ADP 10.5528
401 1YQT ADP 10.5528
402 3B9Q MLI 10.5528
403 3VMF GTP 10.5528
404 2OG2 MLI 10.5528
405 3WXM GTP 10.5528
406 2ODE ALF GDP 10.5528
407 5ZBR ANP 10.5528
408 1LVK MNT BEF 10.5528
409 4YJ1 ADP 10.5528
410 5N69 ADP 10.5528
411 1G6H ADP 10.5528
412 5YV5 ADP 10.5528
413 2J0W ASP 10.5528
414 1IBR GNP 10.566
415 5IRN ADP 10.566
416 2FNA ADP 10.566
417 6FAA ADP 10.6299
418 1G7C 5GP 10.6383
419 1U8Z GDP 10.7143
420 1WA5 GTP 10.7955
421 2QEN ADP 10.9434
422 1VHT BA3 11.0092
423 3DKP ADP 11.0204
424 3KJI ADP 11.0236
425 1VKJ A3P 11.0236
426 1CR1 TTP 11.0236
427 2Q8M AMP 11.0236
428 3FXU TSU 11.0236
429 4ZKD GDP 11.0553
430 6H5E ANP 11.0553
431 3BD9 A3P 11.0553
432 5EE5 GTP 11.1111
433 4DID GDP 11.1842
434 6AIC AMP 11.215
435 1ZEI CRS 11.3208
436 1G3Q ADP 11.3924
437 3WYF GTP 11.4155
438 3M1I GTP 11.4155
439 2CDN ADP 11.4428
440 3DOE GTP 11.4583
441 1OFH ADP 11.4943
442 4U00 ADP 11.5578
443 3ZFD ANP 11.5578
444 4XGU ADP 11.5578
445 1DAK DPU 11.5578
446 1DAK ADP 11.5578
447 2GMV PEP 11.5578
448 1NHX FTB 11.5578
449 1NHX PEP 11.5578
450 2GMV UN8 11.5578
451 1UPT GTP 11.6667
452 1KSH GDP 11.828
453 1YVD GNP 11.8343
454 4NE2 ADP 11.976
455 4NE2 SH2 11.976
456 4WOP CTP 12
457 2WIC GNP 12.0603
458 1CS4 GSP 12.0603
459 2C9O ADP 12.0603
460 4BFW ZVW 12.0603
461 2OFW ADX 12.0603
462 3GJ4 GDP 12.1212
463 3AB3 GDP 12.1951
464 2GJ8 ALF GDP 12.2093
465 3UEC ALA ARG TPO LYS 12.3288
466 4U5X GNP 12.3596
467 2A5F GTP 12.4352
468 2Y65 ADP 12.5628
469 1TQ4 GDP 12.5628
470 4BAS GNP 12.5628
471 5BN3 ADP 12.5628
472 2QG6 NMN 12.5628
473 5N0J FAD 12.5628
474 3H4S ADP 12.5926
475 4YS0 ADP 12.5984
476 3Q72 GNP 12.6506
477 3EZ2 ADP 12.8302
478 1IHU AF3 12.8302
479 1IHU ADP 12.8302
480 1NY5 ADP 12.8302
481 4JLV ADP 12.9921
482 1QHH ATP 12.9921
483 2IYL GDP 13.0653
484 2F9L GDP 13.0653
485 4TMZ GSP 13.0653
486 4NCN GTP 13.0653
487 4Q1A 2XZ 13.0653
488 4Q1A UDP 13.0653
489 5G3Y ADP 13.0653
490 1UKZ ADP 13.0653
491 1AQU A3P 13.0653
492 3A4M ADP 13.0769
493 1KY3 GDP 13.1868
494 4IOK XPO 13.2075
495 4IOK ADP 13.2075
496 5W76 GDP 13.3858
497 4R43 GDP 13.3858
498 4WZA ACP 13.3858
499 4WZA ADP 13.3858
500 3WYA GDP 13.5678
501 3WY9 GDP 13.5678
502 2G77 GDP 13.5678
503 4LYA ATP 13.5678
504 2RGX AP5 13.5678
505 3RC3 ANP 13.5678
506 2FSH ANP 13.5678
507 2G77 AF3 13.5678
508 3QBT GNP 13.5714
509 4ZDJ UTP 13.5849
510 3AQ4 GDP 13.587
511 3RAB GNP 13.6095
512 1OIV GDP 13.6126
513 1KO8 6PG 13.7143
514 5H67 ATP 13.75
515 1MR3 G3D 13.8122
516 1ZJ6 G3D 13.9037
517 3A1S GDP 13.9535
518 1D2N ANP 13.9623
519 2Y8E GNP 13.9665
520 3RWO GDP 14.0541
521 1DAR GDP 14.0704
522 5L3R GCP 14.0704
523 4RZ3 ADP 14.0704
524 1GP2 GDP 14.0845
525 6CRK GDP 14.0845
526 1F2U ATP 14.094
527 1B0U ATP 14.1221
528 2W83 GTP 14.2857
529 1ZC3 GNP 14.2857
530 5SZH GNP 14.3791
531 2CK3 ANP 14.3836
532 2V7Q ATP 14.3836
533 2V7Q ADP 14.3836
534 2CK3 ADP 14.3836
535 4YLG GDP 14.4509
536 4NON GDP 14.5669
537 2XAU ADP 14.5669
538 2W58 ADP 14.5729
539 5IFS ADP 14.5729
540 3DZD ADP 14.5729
541 3HU3 AGS 14.5729
542 3HB5 NAP 14.5729
543 2FFQ GSP 14.6199
544 1Y63 ADP 14.6739
545 5UQW GDP 14.8148
546 5OCG GNP 14.8148
547 5U32 GDP 14.8305
548 5KDO GDP 14.8649
549 1ZUI SKM 14.881
550 2JLR ANP 14.9606
551 5TB5 GDP 15.1351
552 5TAR GDP 15.1351
553 1ONI BEZ 15.2174
554 2X77 GDP 15.3439
555 3NHB ADP 15.3543
556 1SKQ GDP 15.5779
557 1MKY GDP 15.5779
558 4B47 GDP 15.5779
559 2EFE GNH 15.5779
560 4TQK NAG 15.5779
561 1NF3 GNP 15.625
562 1TAD ALF 15.748
563 1TAD GDP 15.748
564 1FQK GDP 15.748
565 3PCR GTP 15.8491
566 1D5C GDP 16.0494
567 3LRE ADP 16.0804
568 6FA4 GNP 16.185
569 1YZG GDP 16.2011
570 5JCZ GDP 16.2011
571 5H7J GCP 16.2264
572 5H7K GDP 16.2264
573 2BIF ANP 16.2264
574 2BIF SIN 16.2264
575 4LX0 BEF GDP 16.3842
576 5O2T GSP 16.568
577 2AWN ADP 16.5829
578 3T34 GDP 16.5829
579 4E03 ADP 16.5829
580 3RLF ANP 16.5829
581 2OM2 GDP 16.6667
582 4C4P GNP 16.763
583 5WLB GNP 16.8675
584 3REF GDP 17.0103
585 1U29 I3P 17.0543
586 4IEE AGS 17.3228
587 2ZX2 RAM 17.4359
588 1R4A GNP 17.5758
589 2Q2Y ADP 17.5879
590 2Q2Y MKR 17.5879
591 2D7D ADP 17.5879
592 3GJ5 GDP 17.6471
593 4KVA GTP 17.7165
594 1OIX GDP 17.801
595 1VG0 GDP 17.8744
596 1VG8 GNP 17.8744
597 4YDS ATP 17.9825
598 5KUT GDP 17.9894
599 3GJ3 GDP 18.1818
600 4BQS K2Q 18.1818
601 4BQS ADP 18.1818
602 3GJ7 GDP 18.3673
603 1G8S MET 18.593
604 1Z0K GTP 18.8406
605 1M2O GNP 18.9474
606 2KIN ADP 19
607 2CBZ ATP 19.0955
608 1LFD GNP 19.1617
609 6C90 ADP 19.2308
610 5TSH ANP 19.2913
611 5TSH ADP 19.2913
612 2QN6 GDP 19.3548
613 1I4D GDP 19.598
614 5JCP GDP ALF 19.598
615 2DPY ADP 19.598
616 5E95 GDP 19.6429
617 2C5L GTP 19.6532
618 1X1R GDP 19.6629
619 3WYG GTP 19.7368
620 6BVJ GNP 19.7605
621 3X1Z GNP 19.7605
622 1XPJ TLA 19.8413
623 1CLU DBG 19.8795
624 1WQ1 GDP 19.8795
625 3KUD GDP 19.8795
626 3DDC GNP 19.8795
627 1WQ1 AF3 19.8795
628 4K81 GTP 19.883
629 1VG1 GDP 20
630 1VG9 GDP 20
631 2VB6 ADP BEF 20.1342
632 1OW3 GDP 20.2073
633 3BC1 GNP 20.339
634 1GUA GNP 20.3593
635 1GPJ CIT 20.4724
636 2UZI GTP 20.4819
637 1OYY AGS 20.603
638 1S9D GDP 20.6897
639 3T12 GDP ALF 20.7071
640 3T1O GDP 20.7071
641 2GCO GNP 20.8955
642 2GCN GDP 20.8955
643 4HDO GNP 20.9581
644 4HDQ GNP 20.9581
645 4D0N GDP 21.0811
646 3LXR GDP 21.0811
647 5HPY GDP 21.0811
648 6BC0 GSP 21.0811
649 6BCB GSP 21.0811
650 6BCA GSP 21.0811
651 5J1S ATP 21.1382
652 1KMQ GNP 21.1957
653 1AKY AP5 21.3636
654 1FQJ GDP 21.4286
655 4KVG GTP 21.4286
656 2O66 FLC 21.4815
657 2HV8 GTP 21.5116
658 5Z2M GTP 21.5909
659 5XC5 GTP 21.5909
660 4XOI GTP 21.6667
661 4D0G GTP 21.7391
662 4XSH GSP 21.7877
663 1TX4 ALF GDP 22.0339
664 1G7S GDP 22.1106
665 4WZ6 ATP 22.1106
666 5DI3 GNP 22.1622
667 4FCW ADP 22.6131
668 5VHC BEF ADP 22.8346
669 6CS8 F9Y 23.6181
670 4DCT GDP 23.622
671 4LJ9 ACP 24.1206
672 1J2J GTP 24.4444
673 1RJ9 GCP 24.6231
674 3Q85 GNP 24.8521
675 5L3V GDP 25.1256
676 1YRB GDP 25.1908
677 1CXZ GSP 25.5814
678 5L3S GNP 25.6281
679 5L3W GDP 25.6281
680 5L3S G 25.6281
681 3QF7 ANP 26
682 3DC4 ADP 27.6382
683 5LEF GTP 28.2723
684 2QTV GNP 28.5714
685 3ZIA ADP 28.5714
686 3ZIA ATP 28.5714
687 3MJH GTP 29.4118
688 2GNK ATP 29.4643
689 5IRC GDP 30.3483
690 5HCN GCP 31.1558
691 1R6B ADP 31.6583
692 1Z0J GTP 32.2034
693 3MD0 GDP 33.1658
694 3TK1 GDP 33.6683
695 4DKX GDP 34.6734
696 4LC1 GDP 35.1759
697 1HTW ADP 35.443
698 1YZQ GNP 40.5882
699 3E70 GDP 41.206
700 4LPS GDP 42.7136
701 2HCJ GDP 43.2432
702 6D5E GNP 48.503
703 6D5J GNP 48.503
704 6BVK GNP 48.503
705 6D5H GNP 48.503
706 6D5G GNP 48.503
707 6D59 GNP 48.503
708 6BVL GNP 48.503
709 6D56 GNP 48.503
710 6D5L GNP 48.503
711 6BVI GNP 48.503
712 6D55 GNP 48.503
713 6BVM GNP 48.503
714 6D5M GNP 49.1018
715 6D5V GNP 49.1018
716 1NVV GNP 49.3976
Pocket No.: 2; Query (leader) PDB : 4HI0; Ligand: GDP; Similar sites found with APoc: 10
This union binding pocket(no: 2) in the query (biounit: 4hi0.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 2XZ9 PYR 4.0201
2 4Q9N 0WE 5.11811
3 4D06 NAR 5.52764
4 4L80 OXL 5.66038
5 4NS0 PIO 6.76692
6 2V5K OXM 7.03518
7 5WXU FLC 7.54717
8 5K0A FAD 8.0402
9 3HCH RSM 10.9589
10 5WS9 ATP 11.4173
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