Receptor
PDB id Resolution Class Description Source Keywords
4DKB 1.83 Å EC: 3.6.1.23 CRYSTAL STRUCTURE OF TRYPANOSOMA BRUCEI DUTPASE WITH DUPNP A TRYPANOSOMA BRUCEI ALL ALPHA NTP PYROPHOSPHOHYDROLASE ALL ALPHA NTP PYROPHOSPHHYDROLASE-HYDROLASE INHIBITOR COMPLEX
Ref.: ON THE CATALYTIC MECHANISM OF DIMERIC DUTPASES. BIOCHEM.J. V. 456 81 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:302;
A:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
40.078 Ca [Ca+2...
DUN A:303;
Valid;
none;
submit data
387.177 C9 H15 N3 O10 P2 C1[C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4DL8 1.7 Å EC: 3.6.1.23 CRYSTAL STRUCTURE OF TRYPANOSOMA BRUCEI DUTPASE WITH DUMP, P [ALF3-OPO3] TRANSITION STATE ANALOGUE, MG2+, AND NA+ TRYPANOSOMA BRUCEI ALL ALPHA NTP PYROPHOSPHOHYDROLASE ALL ALPHA NTP PYROPHOSPHHYDROLASE
Ref.: ON THE CATALYTIC MECHANISM OF DIMERIC DUTPASES. BIOCHEM.J. V. 456 81 2013
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 20 families.
1 4DK4 - DUN C9 H15 N3 O10 P2 C1[C@@H]([....
2 4DLC - UMP C9 H13 N2 O8 P C1[C@@H]([....
3 4DL8 - UMP AF3 PO4 n/a n/a
4 4DKB - DUN C9 H15 N3 O10 P2 C1[C@@H]([....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 16 families.
1 4DK4 - DUN C9 H15 N3 O10 P2 C1[C@@H]([....
2 4DLC - UMP C9 H13 N2 O8 P C1[C@@H]([....
3 4DL8 - UMP AF3 PO4 n/a n/a
4 4DKB - DUN C9 H15 N3 O10 P2 C1[C@@H]([....
50% Homology Family (8)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 10 families.
1 2CJE - DUN C9 H15 N3 O10 P2 C1[C@@H]([....
2 2YB0 Kd = 140 uM DUR C9 H12 N2 O5 C1[C@@H]([....
3 2YAZ Kd = 7.3 uM UMP C9 H13 N2 O8 P C1[C@@H]([....
4 2YAY Kd = 0.8 uM DUP C9 H16 N3 O13 P3 C1[C@@H]([....
5 4DK4 - DUN C9 H15 N3 O10 P2 C1[C@@H]([....
6 4DLC - UMP C9 H13 N2 O8 P C1[C@@H]([....
7 4DL8 - UMP AF3 PO4 n/a n/a
8 4DKB - DUN C9 H15 N3 O10 P2 C1[C@@H]([....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: DUN; Similar ligands found: 30
No: Ligand ECFP6 Tc MDL keys Tc
1 DUN 1 1
2 DUP 0.816901 1
3 DU 0.75 0.956522
4 UMP 0.75 0.956522
5 UC5 0.69863 0.957143
6 DUD 0.69863 0.971014
7 DUT 0.662338 0.971014
8 DUS 0.625 0.820513
9 DUR 0.588235 0.842857
10 DU DU DU DU BRU DU DU 0.509804 0.831169
11 UM3 0.506494 0.914286
12 DDN 0.475 0.956522
13 DDU 0.472222 0.722222
14 DU3 0.465909 0.773333
15 DUA 0.465909 0.776316
16 UNP 0.465909 0.915493
17 2KH 0.45977 0.915493
18 BRU 0.457831 0.891892
19 DU4 0.455556 0.730769
20 UFP 0.445783 0.891892
21 TMP 0.440476 0.916667
22 5HU 0.440476 0.930556
23 5IU 0.435294 0.891892
24 DCM 0.423529 0.890411
25 DC 0.423529 0.890411
26 TYD 0.41573 0.930556
27 U5P 0.409639 0.873239
28 U 0.409639 0.873239
29 BVP 0.406593 0.90411
30 YYY 0.4 0.90411
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4DL8; Ligand: UMP AF3 PO4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 4dl8.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback