Receptor
PDB id Resolution Class Description Source Keywords
4B8V 1.59 Å NON-ENZYME: OTHER CLADOSPORIUM FULVUM LYSM EFFECTOR ECP6 IN COMPLEX WITH A BET LINKED N-ACETYL-D-GLUCOSAMINE TETRAMER PASSALORA FULVA SUGAR BINDING PROTEIN CHITIN LYSM
Ref.: FUNGAL EFFECTOR ECP6 OUTCOMPETES HOST IMMUNE RECEPT CHITIN BINDING THROUGH INTRACHAIN LYSM DIMERIZATION ELIFE V. 2 00790 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NDG NAG NAG NAG C:1;
Valid;
none;
submit data
842.887 n/a O(C1C...
NAG A:1198;
Invalid;
none;
submit data
221.208 C8 H15 N O6 CC(=O...
NAG NAG B:1;
Invalid;
none;
submit data
408.404 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4B8V 1.59 Å NON-ENZYME: OTHER CLADOSPORIUM FULVUM LYSM EFFECTOR ECP6 IN COMPLEX WITH A BET LINKED N-ACETYL-D-GLUCOSAMINE TETRAMER PASSALORA FULVA SUGAR BINDING PROTEIN CHITIN LYSM
Ref.: FUNGAL EFFECTOR ECP6 OUTCOMPETES HOST IMMUNE RECEPT CHITIN BINDING THROUGH INTRACHAIN LYSM DIMERIZATION ELIFE V. 2 00790 2013
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 4B9H - NDG NAG NAG NAG n/a n/a
2 4B8V - NDG NAG NAG NAG n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 4B9H - NDG NAG NAG NAG n/a n/a
2 4B8V - NDG NAG NAG NAG n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 4B9H - NDG NAG NAG NAG n/a n/a
2 4B8V - NDG NAG NAG NAG n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: NDG NAG NAG NAG; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 NDG NAG NAG NAG 1 1
2 NDG GCD 0.487805 0.867925
3 GAL FUC NGA 0.487805 0.96
Similar Ligands (3D)
Ligand no: 1; Ligand: NDG NAG NAG NAG; Similar ligands found: 2
No: Ligand Similarity coefficient
1 NAG NAG NAG NAG 0.9515
2 NAG NOJ NAG NAG 0.9340
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4B8V; Ligand: NDG NAG NAG NAG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 4b8v.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
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