Receptor
PDB id Resolution Class Description Source Keywords
4AVI 2.4 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN COMPLEX WITH A METHYL ESTER OCTYL ALPHA-D- M ANNOSIDE AT 2.4 A RESOLUTION ESCHERICHIA COLI CELL ADHESION BACTERIAL ADHESIN TYPE 1 FIMBRIAE URINARY TINFECTION VARIABLE IMMUNOGLOBULIN FOLD
Ref.: THE TYROSINE GATE AS A POTENTIAL ENTROPIC LEVER IN RECEPTOR-BINDING SITE OF THE BACTERIAL ADHESIN FIMH BIOCHEMISTRY V. 51 4790 2012
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NI A:1160;
B:1159;
Part of Protein;
Part of Protein;
none;
none;
submit data
58.693 Ni [Ni+2...
SO4 A:1159;
Invalid;
none;
submit data
96.063 O4 S [O-]S...
XNS A:201;
B:201;
Valid;
Valid;
none;
none;
Kd = 23.6 nM
350.405 C16 H30 O8 COC(=...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6G2R 2.1 Å NON-ENZYME: SIGNAL_HORMONE CRYSTAL STRUCTURE OF FIMH IN COMPLEX WITH A TETRAFLOURINATED ALPHA D-MANNOSIDE ESCHERICHIA COLI (STRAIN K12) TYPE I PILUS CATCH-BOND CELL ADHESION LECTIN UPEC INFECMANNOSE
Ref.: IMPROVEMENT OF AGLYCONE PI-STACKING YIELDS NANOMOLA SUB-NANOMOLAR FIMH ANTAGONISTS. CHEMMEDCHEM V. 14 749 2019
Members (36)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 301 families.
1 4AVI Kd = 23.6 nM XNS C16 H30 O8 COC(=O)CCC....
2 4ATT Kd = 104.6 nM HNV C16 H20 O7 COc1ccc(cc....
3 3ZL1 - BWG C11 H16 N2 O6 S CC(=O)c1cn....
4 4BUQ Kd = 7.3 nM KGM C13 H26 O6 CCCCCCCO[C....
5 5ABZ - Z47 C19 H24 O5 c1ccc2c(c1....
6 4AV4 Kd = 94.3 nM FVQ C14 H17 N O6 c1cc(cnc1)....
7 5AAP - VNY C21 H24 O5 C/C(=C[C@@....
8 1UWF Kd = 0.15 uM DEG C10 H20 O6 CCCCO[C@@H....
9 4AVK Kd = 94.3 nM FVQ C14 H17 N O6 c1cc(cnc1)....
10 4AV0 Kd = 104.6 nM HNV C16 H20 O7 COc1ccc(cc....
11 4CSS Kd = 3.5 nM CWX C19 H23 N O8 S CNS(=O)(=O....
12 4LOV Kd = 17.1 nM KGM C13 H26 O6 CCCCCCCO[C....
13 4AUY Kd = 18.3 nM HNW C15 H18 O7 c1cc(ccc1C....
14 5FS5 Kd = 206.4 nM KGM C13 H26 O6 CCCCCCCO[C....
15 5FWR Kd = 17.7 nM 3X8 C18 H20 O6 c1ccc(cc1)....
16 6GTW - MAN MAN MAN n/a n/a
17 6G2R Kd = 0.35 nM EJK C19 H14 Cl F4 N O6 c1cc(c(cc1....
18 6GTX Kd = 0.00000145 M MMA MAN n/a n/a
19 4X5P Kd = 6.2 nM 3XJ C20 H20 Cl N O9 c1cc(ccc1C....
20 4AVH Kd = 59.5 nM FK9 C12 H24 O6 S CCCSCCCO[C....
21 4XO8 Kd = 1.1 nM KGM C13 H26 O6 CCCCCCCO[C....
22 4X5R Kd = 14 nM 3XO C21 H26 Cl N3 O8 CN1CCN(CC1....
23 6GTY Kd = 0.00000145 M MMA MAN n/a n/a
24 5AAL - 8L8 C21 H24 O5 c1ccc(cc1)....
25 4AV5 Kd = 61 nM FYZ C21 H22 O6 c1ccc(cc1)....
26 2VCO Kd = 20 nM NAG NAG MAN MAN MAN n/a n/a
27 4X5Q - 3XN C20 H20 N2 O8 c1cc(ccc1n....
28 6G2S Kd = 4.01 nM EJN C18 H15 F5 O6 c1cc(ccc1c....
29 5F2F - 5U7 C23 H28 N2 O8 Cc1cc(ccc1....
30 4CST Kd = 1.3 nM CWK C19 H18 Cl N O6 c1cc(ccc1C....
31 3ZL2 - BWG C11 H16 N2 O6 S CC(=O)c1cn....
32 1TR7 Kd = 0.15 uM DEG C10 H20 O6 CCCCO[C@@H....
33 4AVJ Kd = 36.5 nM J73 C17 H23 N3 O7 c1cc(ccc1C....
34 4AUJ Kd = 18.3 nM HNW C15 H18 O7 c1cc(ccc1C....
35 4X50 Kd = 17.7 nM 3X8 C18 H20 O6 c1ccc(cc1)....
36 4XOC Kd = 3 nM KGM C13 H26 O6 CCCCCCCO[C....
70% Homology Family (36)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 221 families.
1 4AVI Kd = 23.6 nM XNS C16 H30 O8 COC(=O)CCC....
2 4ATT Kd = 104.6 nM HNV C16 H20 O7 COc1ccc(cc....
3 3ZL1 - BWG C11 H16 N2 O6 S CC(=O)c1cn....
4 4BUQ Kd = 7.3 nM KGM C13 H26 O6 CCCCCCCO[C....
5 5ABZ - Z47 C19 H24 O5 c1ccc2c(c1....
6 4AV4 Kd = 94.3 nM FVQ C14 H17 N O6 c1cc(cnc1)....
7 5AAP - VNY C21 H24 O5 C/C(=C[C@@....
8 1UWF Kd = 0.15 uM DEG C10 H20 O6 CCCCO[C@@H....
9 4AVK Kd = 94.3 nM FVQ C14 H17 N O6 c1cc(cnc1)....
10 4AV0 Kd = 104.6 nM HNV C16 H20 O7 COc1ccc(cc....
11 4CSS Kd = 3.5 nM CWX C19 H23 N O8 S CNS(=O)(=O....
12 4LOV Kd = 17.1 nM KGM C13 H26 O6 CCCCCCCO[C....
13 4AUY Kd = 18.3 nM HNW C15 H18 O7 c1cc(ccc1C....
14 5FS5 Kd = 206.4 nM KGM C13 H26 O6 CCCCCCCO[C....
15 5FWR Kd = 17.7 nM 3X8 C18 H20 O6 c1ccc(cc1)....
16 6GTW - MAN MAN MAN n/a n/a
17 6G2R Kd = 0.35 nM EJK C19 H14 Cl F4 N O6 c1cc(c(cc1....
18 6GTX Kd = 0.00000145 M MMA MAN n/a n/a
19 4X5P Kd = 6.2 nM 3XJ C20 H20 Cl N O9 c1cc(ccc1C....
20 4AVH Kd = 59.5 nM FK9 C12 H24 O6 S CCCSCCCO[C....
21 4XO8 Kd = 1.1 nM KGM C13 H26 O6 CCCCCCCO[C....
22 4X5R Kd = 14 nM 3XO C21 H26 Cl N3 O8 CN1CCN(CC1....
23 6GTY Kd = 0.00000145 M MMA MAN n/a n/a
24 5AAL - 8L8 C21 H24 O5 c1ccc(cc1)....
25 4AV5 Kd = 61 nM FYZ C21 H22 O6 c1ccc(cc1)....
26 2VCO Kd = 20 nM NAG NAG MAN MAN MAN n/a n/a
27 4X5Q - 3XN C20 H20 N2 O8 c1cc(ccc1n....
28 6G2S Kd = 4.01 nM EJN C18 H15 F5 O6 c1cc(ccc1c....
29 5F2F - 5U7 C23 H28 N2 O8 Cc1cc(ccc1....
30 4CST Kd = 1.3 nM CWK C19 H18 Cl N O6 c1cc(ccc1C....
31 3ZL2 - BWG C11 H16 N2 O6 S CC(=O)c1cn....
32 1TR7 Kd = 0.15 uM DEG C10 H20 O6 CCCCO[C@@H....
33 4AVJ Kd = 36.5 nM J73 C17 H23 N3 O7 c1cc(ccc1C....
34 4AUJ Kd = 18.3 nM HNW C15 H18 O7 c1cc(ccc1C....
35 4X50 Kd = 17.7 nM 3X8 C18 H20 O6 c1ccc(cc1)....
36 4XOC Kd = 3 nM KGM C13 H26 O6 CCCCCCCO[C....
50% Homology Family (38)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 181 families.
1 4AVI Kd = 23.6 nM XNS C16 H30 O8 COC(=O)CCC....
2 4ATT Kd = 104.6 nM HNV C16 H20 O7 COc1ccc(cc....
3 3ZL1 - BWG C11 H16 N2 O6 S CC(=O)c1cn....
4 4BUQ Kd = 7.3 nM KGM C13 H26 O6 CCCCCCCO[C....
5 5ABZ - Z47 C19 H24 O5 c1ccc2c(c1....
6 4AV4 Kd = 94.3 nM FVQ C14 H17 N O6 c1cc(cnc1)....
7 5AAP - VNY C21 H24 O5 C/C(=C[C@@....
8 1UWF Kd = 0.15 uM DEG C10 H20 O6 CCCCO[C@@H....
9 4AVK Kd = 94.3 nM FVQ C14 H17 N O6 c1cc(cnc1)....
10 4AV0 Kd = 104.6 nM HNV C16 H20 O7 COc1ccc(cc....
11 4CSS Kd = 3.5 nM CWX C19 H23 N O8 S CNS(=O)(=O....
12 4LOV Kd = 17.1 nM KGM C13 H26 O6 CCCCCCCO[C....
13 4AUY Kd = 18.3 nM HNW C15 H18 O7 c1cc(ccc1C....
14 5FS5 Kd = 206.4 nM KGM C13 H26 O6 CCCCCCCO[C....
15 5FWR Kd = 17.7 nM 3X8 C18 H20 O6 c1ccc(cc1)....
16 6GTW - MAN MAN MAN n/a n/a
17 6G2R Kd = 0.35 nM EJK C19 H14 Cl F4 N O6 c1cc(c(cc1....
18 6GTX Kd = 0.00000145 M MMA MAN n/a n/a
19 4X5P Kd = 6.2 nM 3XJ C20 H20 Cl N O9 c1cc(ccc1C....
20 4AVH Kd = 59.5 nM FK9 C12 H24 O6 S CCCSCCCO[C....
21 4XO8 Kd = 1.1 nM KGM C13 H26 O6 CCCCCCCO[C....
22 4X5R Kd = 14 nM 3XO C21 H26 Cl N3 O8 CN1CCN(CC1....
23 6GTY Kd = 0.00000145 M MMA MAN n/a n/a
24 5AAL - 8L8 C21 H24 O5 c1ccc(cc1)....
25 4AV5 Kd = 61 nM FYZ C21 H22 O6 c1ccc(cc1)....
26 2VCO Kd = 20 nM NAG NAG MAN MAN MAN n/a n/a
27 4X5Q - 3XN C20 H20 N2 O8 c1cc(ccc1n....
28 6G2S Kd = 4.01 nM EJN C18 H15 F5 O6 c1cc(ccc1c....
29 5F2F - 5U7 C23 H28 N2 O8 Cc1cc(ccc1....
30 4CST Kd = 1.3 nM CWK C19 H18 Cl N O6 c1cc(ccc1C....
31 3ZL2 - BWG C11 H16 N2 O6 S CC(=O)c1cn....
32 1TR7 Kd = 0.15 uM DEG C10 H20 O6 CCCCO[C@@H....
33 4AVJ Kd = 36.5 nM J73 C17 H23 N3 O7 c1cc(ccc1C....
34 4AUJ Kd = 18.3 nM HNW C15 H18 O7 c1cc(ccc1C....
35 4X50 Kd = 17.7 nM 3X8 C18 H20 O6 c1ccc(cc1)....
36 4XOC Kd = 3 nM KGM C13 H26 O6 CCCCCCCO[C....
37 5LNE Kd = 17.43 uM A2G GAL n/a n/a
38 5AB1 ic50 = 3.8 uM GLC GLC GLC TA5 GLC GLC GLC GLC HP6 MAN n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: XNS; Similar ligands found: 39
No: Ligand ECFP6 Tc MDL keys Tc
1 DR4 1 1
2 XNS 1 1
3 BNG 0.637931 0.904762
4 HSJ 0.637931 0.904762
5 BOG 0.637931 0.904762
6 B7G 0.62069 0.904762
7 KGM 0.62069 0.904762
8 JZR 0.603448 0.880952
9 BHG 0.603448 0.880952
10 GLC HEX 0.603448 0.880952
11 AFO 0.559322 0.818182
12 DEG 0.551724 0.809524
13 CQX 0.514706 0.883721
14 FUC GAL NAG NON FUC 0.505618 0.727273
15 LMU 0.486111 0.863636
16 LMT 0.486111 0.863636
17 DMU 0.486111 0.863636
18 UMQ 0.486111 0.863636
19 FK9 0.477612 0.818182
20 EBQ 0.460317 0.785714
21 6UZ 0.447368 0.795455
22 T6D 0.441558 0.886364
23 EBG 0.4375 0.785714
24 FEE 0.430233 0.722222
25 1O2 0.426966 0.866667
26 GM3 0.423529 0.735849
27 DGD 0.422222 0.847826
28 3TF 0.422222 0.866667
29 GLA GAL GLC NBU 0.418919 0.795455
30 MA4 0.414634 0.833333
31 0SH 0.413793 0.722222
32 F61 0.413793 0.722222
33 PBS 0.413793 0.722222
34 AGH 0.413793 0.722222
35 SER MAN 0.411765 0.62
36 BGB 0.409639 0.844444
37 03F 0.406593 0.709091
38 BHE 0.405063 0.844444
39 CM5 0.402439 0.833333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6G2R; Ligand: EJK; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6g2r.bio2) has 14 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 6G2R; Ligand: EJK; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 6g2r.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
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