-->
Receptor
PDB id Resolution Class Description Source Keywords
3ZDS 1.7 Å EC: 1.13.11.5 STRUCTURE OF HOMOGENTISATE 1,2-DIOXYGENASE IN COMPLEX WITH REACTION INTERMEDIATES OF HOMOGENTISATE WITH OXYGEN. PSEUDOMONAS PUTIDA OXIDOREDUCTASE EXTRADIOL ALKYLPEROXO SPECIES HOMOGENTISATE-SEMIQUINONE RING-FISSION PRODUCT
Ref.: VISUALIZING THE SUBSTRATE-, SUPEROXO-, ALKYLPEROXO-PRODUCT-BOUND STATES AT THE NON-HEME FE(II) SITE OF HOMOGENTISATE DIOXYGENASE PROC.NATL.ACAD.SCI.USA V. 110 12625 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
OMD J:2001;
K:2001;
D:2001;
B:2001;
E:2001;
I:2001;
G:2001;
H:2001;
 Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
none;
none;
none;
none;
 submit data
168.147 C8 H8 O4 c1cc(...
FE A:2000;
E:2000;
K:2000;
C:2000;
L:2000;
B:2000;
J:2000;
D:2000;
F:2000;
I:2000;
H:2000;
G:2000;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
 submit data
55.845 Fe [Fe+3...
HMQ F:2001;
L:2001;
 Valid;
Valid;
 none;
none;
 submit data
200.146 C8 H8 O6 C1=C[...
PO4 E:2002;
 Invalid;
 none;
 submit data
94.971 O4 P [O-]P...
M8O A:2001;
 Valid;
 none;
 submit data
200.146 C8 H8 O6 C(C(=...
HQ9 C:2001;
 Valid;
 none;
 submit data
168.147 C8 H8 O4 C1=CC...
OXY C:1999;
 Invalid;
 none;
 submit data
31.999 O2 O=O
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3ZDS 1.7 Å EC: 1.13.11.5 STRUCTURE OF HOMOGENTISATE 1,2-DIOXYGENASE IN COMPLEX WITH REACTION INTERMEDIATES OF HOMOGENTISATE WITH OXYGEN. PSEUDOMONAS PUTIDA OXIDOREDUCTASE EXTRADIOL ALKYLPEROXO SPECIES HOMOGENTISATE-SEMIQUINONE RING-FISSION PRODUCT
Ref.: VISUALIZING THE SUBSTRATE-, SUPEROXO-, ALKYLPEROXO-PRODUCT-BOUND STATES AT THE NON-HEME FE(II) SITE OF HOMOGENTISATE DIOXYGENASE PROC.NATL.ACAD.SCI.USA V. 110 12625 2013
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4AQ6 - OMD C8 H8 O4 c1cc(c(cc1....
2 3ZDS - HMQ C8 H8 O6 C1=C[C@@](....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4AQ6 - OMD C8 H8 O4 c1cc(c(cc1....
2 3ZDS - HMQ C8 H8 O6 C1=C[C@@](....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4AQ6 - OMD C8 H8 O4 c1cc(c(cc1....
2 3ZDS - HMQ C8 H8 O6 C1=C[C@@](....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: OMD; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 OMD 1 1
2 OHP 0.404762 0.916667
3 GTQ 0.4 0.730769
Ligand no: 2; Ligand: HMQ; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 HMQ 1 1
Ligand no: 3; Ligand: M8O; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 M8O 1 1
Ligand no: 4; Ligand: HQ9; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 HQ9 1 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3ZDS; Ligand: HMQ; Similar sites found with APoc: 82
This union binding pocket(no: 1) in the query (biounit: 3zds.bio5) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1Y9Q MED None
2 1GQG DCD 1.42857
3 5NW7 9C2 1.61663
4 5FWE OGA 1.83727
5 2YBP 2HG 1.83727
6 5LY2 OGA 1.83727
7 6H8P OGA 1.83727
8 2OS2 OGA 1.83727
9 5A3T MMK 1.84758
10 6FUL E7Z 1.84758
11 3AVR OGA 1.84758
12 4ZCW 4NG 1.84758
13 1UNB AKG 1.92926
14 1UNB PN1 1.92926
15 5F3I 5UJ 1.94444
16 4IGQ OGA 1.94444
17 4IGQ THR M3L GLN 1.94444
18 2P5B OGA 1.98864
19 2Q8E OGA 1.98864
20 5JWP AKG 1.98864
21 2Y0I AKG 1.98864
22 3P3N AKG 2.00573
23 2WA4 069 2.00573
24 2XUM OGA 2.00573
25 4B7E OGA 2.00573
26 5UQD AKG 2.07852
27 4LIT AKG 2.2113
28 1OIJ AKG 2.32558
29 1OIK AKG 2.32558
30 4CCN OGA 2.54042
31 4Y3O OGA 2.54042
32 1J0D 5PA 2.6393
33 4TMC FMN 2.72953
34 3B00 16A 2.94118
35 4P7X YCP 3.08219
36 4P7X AKG 3.08219
37 3OPT AKG 3.21716
38 1ODM ASV 3.32326
39 4PIO SAH 3.40557
40 4PIO AVI 3.40557
41 5Y4K AKR 3.4398
42 1YKD CMP 3.51759
43 5FLJ QUE 3.76344
44 5KR7 6X9 3.81471
45 1SZO CAX 3.89105
46 6F4T OGA 3.92157
47 5FP3 3JI 3.9261
48 6F6D AKG 3.9261
49 5FP4 YC8 4.19162
50 2ARC ARA 4.26829
51 2WSB NAD 4.33071
52 4MZU TYD 4.48718
53 5EO8 TFU 4.50161
54 1JW0 GUA 5.06329
55 3KFC 61X 5.13834
56 4HSJ 6PC 5.17241
57 4O1Z MXM 5.54273
58 4Q0P 0MK 5.76923
59 3WW2 SF6 5.85938
60 3WW2 LPK 5.85938
61 4WW8 VD9 6.08365
62 5FPX GLY SER SER HIS HIS HIS HIS HIS 6.19469
63 2RDQ AKG 6.25
64 5GP0 GPP 6.71141
65 6EXF LYS 6.98925
66 4KS7 X4Z 7.19178
67 5JE0 SAH 7.28745
68 5JE0 AZ8 7.28745
69 3MPB FRU 7.31707
70 1QFT HSM 7.42857
71 5JSP DQY 7.9602
72 5TFZ 7BC 9.33333
73 6BYM HC3 9.35961
74 6EOZ AKG 10.3896
75 6EOZ 58K 10.3896
76 1MH5 HAL 10.4348
77 5I0U DCY 11
78 1LRH NLA 11.6564
79 2DDQ HRB 12.2066
80 1H2M OGA 15.3846
81 4XAC AKG 15.4762
82 1H2K OGA 19.5122
Pocket No.: 2; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 55
This union binding pocket(no: 2) in the query (biounit: 3zds.bio5) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1Y9Q MED None
2 5FWE OGA 1.83727
3 2YBP 2HG 1.83727
4 5LY2 OGA 1.83727
5 6H8P OGA 1.83727
6 2OS2 OGA 1.83727
7 5A3T MMK 1.84758
8 6FUL E7Z 1.84758
9 3AVR OGA 1.84758
10 5F3I 5UJ 1.94444
11 4IGQ OGA 1.94444
12 2P5B OGA 1.98864
13 2Q8E OGA 1.98864
14 5JWP AKG 1.98864
15 2Y0I AKG 1.98864
16 2XUM OGA 2.00573
17 4B7E OGA 2.00573
18 4LIT AKG 2.2113
19 4CCN OGA 2.54042
20 4Y3O OGA 2.54042
21 4WXG 2BO 2.57009
22 2HFU MEV 2.71084
23 1OS7 AKG 3.18021
24 1OS7 TAU 3.18021
25 3NNF AKG 3.19767
26 3OPT AKG 3.21716
27 5YXC CIT 3.24074
28 6F3M NAD 3.4642
29 1YKD CMP 3.51759
30 5FLJ QUE 3.76344
31 2R5A MLZ 3.77358
32 5KR7 6X9 3.81471
33 6F4T OGA 3.92157
34 5FP3 3JI 3.9261
35 1RHC F42 ACN 3.93939
36 4MLO PAM 3.98551
37 5FP4 YC8 4.19162
38 4MZU TYD 4.48718
39 5EO8 TFU 4.50161
40 5XNA SHV 5.07246
41 3KFC 61X 5.13834
42 1W4R TTP 6.66667
43 1VYF OLA 6.66667
44 1VEM GLC GLC 6.69746
45 1QFT HSM 7.42857
46 2VZZ SCA 7.79817
47 4YRD 3IT 8.07799
48 5NBW 8SK 8.10811
49 2ORV 4TA 9.40171
50 5I0U DCY 11
51 5XQW 8EU 11.5207
52 1LRH NLA 11.6564
53 2DDQ HRB 12.2066
54 1H2M OGA 15.3846
55 1H2K OGA 19.5122
Pocket No.: 3; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 33
This union binding pocket(no: 3) in the query (biounit: 3zds.bio5) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 3E85 BSU 1.89873
2 1UNB PN1 1.92926
3 1UNB AKG 1.92926
4 7CPA FVF 1.9544
5 2WA4 069 2.00573
6 5UQD AKG 2.07852
7 3PP0 03Q 2.36686
8 3RG9 WRA 2.5
9 4CCK OGA 2.54042
10 5DRB 5FJ 2.74914
11 1QY1 PRZ 2.87356
12 6FXR AKG 3.00231
13 2J5B TYE 3.16092
14 2R09 4IP 3.17003
15 5U6C 7YS 3.1746
16 2FCU AKG 3.19489
17 5HV0 AKG 3.22581
18 4PIO SAH 3.40557
19 6F6D AKG 3.9261
20 4H6B 10X 4.10256
21 2OMN IPH 4.14747
22 4CRL C1I 4.21053
23 4D42 NAP 4.25532
24 4D42 W0I 4.25532
25 5IVE 6E8 5.15152
26 5OO5 UUA 5.64516
27 5JE0 SAH 7.28745
28 5JE0 AZ8 7.28745
29 3Q8U ADP 8.28025
30 1GT4 UNA 10.0629
31 6EOZ 58K 10.3896
32 3RUG DB6 11.1111
33 4XAC AKG 15.4762
Pocket No.: 4; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 20
This union binding pocket(no: 4) in the query (biounit: 3zds.bio5) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 4ZCW 4NG 1.84758
2 1OIK AKG 2.32558
3 1Z8O DEB 2.47525
4 6HTO MET 2.75
5 6HTO 5AD 2.75
6 4RFR RHN 2.95567
7 3MTX PGT 3.31126
8 4PIO AVI 3.40557
9 2WU6 DKI 3.41207
10 4JGP PYR 3.68664
11 3VPC ADP 3.90071
12 1FDQ HXA 4.58015
13 4O1Z MXM 5.54273
14 3WW2 SF6 5.85938
15 4J7U YTZ 5.90278
16 4J7U NAP 5.90278
17 4L2I FAD 6.84411
18 3L9R L9R 7.14286
19 2E5A LAQ 7.20461
20 2YG2 S1P 18.0233
Pocket No.: 5; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 8
This union binding pocket(no: 5) in the query (biounit: 3zds.bio5) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 5WO4 B7V 1.3245
2 1XPK HMG 2.06186
3 1Q19 SSC 2.77136
4 4H6B 10Y 4.10256
5 4QM9 CYS 5.78035
6 3WW2 LPK 5.85938
7 5EW9 5VC 5.90406
8 1ZH8 NAP 6.46651
Pocket No.: 6; Query (leader) PDB : 3ZDS; Ligand: HMQ; Similar sites found with APoc: 9
This union binding pocket(no: 6) in the query (biounit: 3zds.bio5) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 3LN0 52B 2.77136
2 2H7C COA 3.00231
3 3WDX BGC BGC GLC 4.69799
4 5IVE 6E8 5.15152
5 2A1X AKG 5.19481
6 5FQK 6NT 5.94796
7 4R6W SAH 7.75194
8 4YRD 3IT 8.07799
9 4IE6 UN9 8.54503
Pocket No.: 7; Query (leader) PDB : 3ZDS; Ligand: HQ9; Similar sites found with APoc: 85
This union binding pocket(no: 7) in the query (biounit: 3zds.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
1 3L4U DSK 1.61663
2 5NW7 9C2 1.61663
3 5FWE OGA 1.83727
4 5LY2 OGA 1.83727
5 2YBP 2HG 1.83727
6 2OS2 OGA 1.83727
7 6H8P OGA 1.83727
8 6FUL E7Z 1.84758
9 3AVR OGA 1.84758
10 4ZCW 4NG 1.84758
11 2VBF TPP 1.84758
12 5F3I 5UJ 1.94444
13 4IGQ OGA 1.94444
14 2P5B OGA 1.98864
15 2Q8E OGA 1.98864
16 5JWP AKG 1.98864
17 2WA4 069 2.00573
18 2XUM OGA 2.00573
19 5UQD AKG 2.07852
20 5FWJ MMK 2.07852
21 1OIK AKG 2.32558
22 4CCN OGA 2.54042
23 4Y3O OGA 2.54042
24 4WXG 2BO 2.57009
25 1T36 U 2.77136
26 6FXR AKG 3.00231
27 4WNP 3RJ 3.13589
28 1OS7 TAU 3.18021
29 1OS7 AKG 3.18021
30 3NNF AKG 3.19767
31 3OPT AKG 3.21716
32 5HV0 AKG 3.22581
33 4PIO AVI 3.40557
34 4PIO SAH 3.40557
35 1YKD CMP 3.51759
36 5FLJ QUE 3.76344
37 2R5A MLZ 3.77358
38 5KR7 6X9 3.81471
39 3W6C NAG NAG 3.82514
40 4RYV ZEA 3.87097
41 6F4T OGA 3.92157
42 5FP3 3JI 3.9261
43 6F6D AKG 3.9261
44 4MLO PAM 3.98551
45 5FP4 YC8 4.19162
46 5C5T AKG 4.38596
47 5EO8 TFU 4.50161
48 1FDQ HXA 4.58015
49 1S7G APR 4.74308
50 3KFC 61X 5.13834
51 5W19 9TD 5.54273
52 4O1Z MXM 5.54273
53 3GJB AKG 5.64263
54 5OO5 UUA 5.64516
55 5VCV 1N1 5.78778
56 3WW2 SF6 5.85938
57 3WW2 LPK 5.85938
58 5FPX GLY SER SER HIS HIS HIS HIS HIS 6.19469
59 2RDQ AKG 6.25
60 1VYF OLA 6.66667
61 1VEM GLC GLC 6.69746
62 4L2I FAD 6.84411
63 2E5A LAQ 7.20461
64 5JE0 SAH 7.28745
65 5JE0 AZ8 7.28745
66 1QFT HSM 7.42857
67 4YRD 3IT 8.07799
68 5NBW 8SK 8.10811
69 1DZK PRZ 8.9172
70 5X7Q GLC GLC GLC BGC 9.00693
71 5TFZ 7BC 9.33333
72 6EOZ AKG 10.3896
73 6EOZ 58K 10.3896
74 1SQI 869 10.4326
75 1MH5 HAL 10.4348
76 5I0U DCY 11
77 3SAO NKN 11.25
78 5XQW 8EU 11.5207
79 1LRH NLA 11.6564
80 2DDQ HRB 12.2066
81 1MEX RAC 14.8837
82 1H2M OGA 15.3846
83 1H2K OGA 19.5122
84 1ERB ETR 20.765
85 3T50 FMN 24.2188
Pocket No.: 8; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 11
This union binding pocket(no: 8) in the query (biounit: 3zds.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 5W0N UPU 1.73697
2 2VBF TPP 1.84758
3 5HCY 60D 3.92749
4 5W19 9TD 5.54273
5 5GLN XYS 6.92841
6 5GLN XYP XYP XYP 6.92841
7 4R6W SAH 7.75194
8 2QZT PLM 10.8108
9 3SAO NKN 11.25
10 2ZCQ B65 11.2628
11 3VPB ADP 14.2857
Pocket No.: 9; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 4
This union binding pocket(no: 9) in the query (biounit: 3zds.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 4HPP GLU 3.69515
2 1MJJ HAL 11.0132
3 3IS2 FAD 13.6364
4 1OFZ FUL 13.7821
Pocket No.: 10; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 7
This union binding pocket(no: 10) in the query (biounit: 3zds.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 1DRY AKG 2.46914
2 1DRY AAG 2.46914
3 1ZPD DPX 2.77136
4 2HK5 1BM 5.18518
5 1YQC GLV 7.05882
6 5CSD ACD 8.1761
7 1SQI 869 10.4326
Pocket No.: 11; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 1
This union binding pocket(no: 11) in the query (biounit: 3zds.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 1M2K APR 6.82731
Pocket No.: 12; Query (leader) PDB : 3ZDS; Ligand: M8O; Similar sites found with APoc: 84
This union binding pocket(no: 12) in the query (biounit: 3zds.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 6F6J CUW 1.67598
2 6F6J SIN 1.67598
3 5FWE OGA 1.83727
4 2YBP 2HG 1.83727
5 5LY2 OGA 1.83727
6 6H8P OGA 1.83727
7 2OS2 OGA 1.83727
8 5A3T MMK 1.84758
9 6FUL E7Z 1.84758
10 2VBF TPP 1.84758
11 4ZCW 4NG 1.84758
12 1YNH SUO 1.84758
13 5F3I 5UJ 1.94444
14 4IGQ OGA 1.94444
15 2P5B OGA 1.98864
16 2Q8E OGA 1.98864
17 5JWP AKG 1.98864
18 2Y0I AKG 1.98864
19 4B7E OGA 2.00573
20 4LIT AKG 2.2113
21 3DNT ATP 2.30947
22 1Z8O DEB 2.47525
23 3RG9 WRA 2.5
24 4CCN OGA 2.54042
25 3WQD PLP 999 2.5641
26 4I5I NAD 2.78746
27 1TFZ 869 2.83019
28 2IXC TRH 2.9703
29 1H5T DAU 3.07167
30 1W5F G2P 3.11615
31 2FCU AKG 3.19489
32 3NNF AKG 3.19767
33 3OPT AKG 3.21716
34 5HV0 AKG 3.22581
35 4PIO SAH 3.40557
36 2WU6 DKI 3.41207
37 1YKD CMP 3.51759
38 2R5A MLZ 3.77358
39 5KR7 6X9 3.81471
40 3VPC ADP 3.90071
41 6F4T OGA 3.92157
42 5FP3 3JI 3.9261
43 6F6D AKG 3.9261
44 1RHC F42 ACN 3.93939
45 4MLO PAM 3.98551
46 5FP4 YC8 4.19162
47 4K26 SFF 4.34783
48 5C5T AKG 4.38596
49 1KOJ PAN 4.38799
50 5EO8 TFU 4.50161
51 5TPX 7H7 4.87805
52 4R38 RBF 5
53 5IVE 6E8 5.15152
54 4P8K FAD 5.31178
55 4P8K 38C 5.31178
56 4O1Z MXM 5.54273
57 4GQP B40 5.62249
58 6C6O ENG 5.77367
59 2RDQ AKG 6.25
60 1VYF OLA 6.66667
61 1M2K APR 6.82731
62 6HOY AR6 6.95364
63 1YQC GLV 7.05882
64 3ZG6 APR 7.09459
65 2E5A LAQ 7.20461
66 5N17 8FK 7.24638
67 5JE0 SAH 7.28745
68 5JE0 AZ8 7.28745
69 1QFT HSM 7.42857
70 5Y02 MXN 7.47664
71 5Y4R C2E 7.58621
72 4R6W SAH 7.75194
73 5NBW 8SK 8.10811
74 1SQI 869 10.4326
75 3SCH TB6 10.6061
76 1ZZ7 S0H 11.1111
77 3SAO NKN 11.25
78 1LRH NLA 11.6564
79 2DDQ HRB 12.2066
80 3IS2 FAD 13.6364
81 1OFZ FUL 13.7821
82 3VPB ADP 14.2857
83 1H2M OGA 15.3846
84 3T50 FMN 24.2188
Pocket No.: 13; Query (leader) PDB : 3ZDS; Ligand: HMQ; Similar sites found with APoc: 8
This union binding pocket(no: 13) in the query (biounit: 3zds.bio4) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1Y0G 8PP 2.09424
2 1OS7 AKG 3.18021
3 2YKL NLD 3.30189
4 6F3M NAD 3.4642
5 6GG9 FMN 3.7037
6 2R5A MLZ 3.77358
7 2PR5 FMN 5.30303
8 4G7A AZM 7.66129
Pocket No.: 14; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 1
This union binding pocket(no: 14) in the query (biounit: 3zds.bio4) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 5IXH OTP 4.96894
Pocket No.: 15; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 1
This union binding pocket(no: 15) in the query (biounit: 3zds.bio4) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 4K26 SFF 4.34783
Pocket No.: 16; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 16) in the query (biounit: 3zds.bio4) has 14 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 17; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 17) in the query (biounit: 3zds.bio4) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 18; Query (leader) PDB : 3ZDS; Ligand: HMQ; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 18) in the query (biounit: 3zds.bio4) has 16 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 19; Query (leader) PDB : 3ZDS; Ligand: HMQ; Similar sites found with APoc: 1
This union binding pocket(no: 19) in the query (biounit: 3zds.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1YDK GTX 4.95496
Pocket No.: 20; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 20) in the query (biounit: 3zds.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 21; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 4
This union binding pocket(no: 21) in the query (biounit: 3zds.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 5MY8 RXZ 3.39426
2 3VEH 0GA 3.7694
3 1EWF PC1 4.61894
4 5OJI NAP 5
Pocket No.: 22; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 22) in the query (biounit: 3zds.bio2) has 14 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 23; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: 2
This union binding pocket(no: 23) in the query (biounit: 3zds.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 4OTH DRN 5.57185
2 2RDQ AKG 6.25
Pocket No.: 24; Query (leader) PDB : 3ZDS; Ligand: HMQ; Similar sites found with APoc: 3
This union binding pocket(no: 24) in the query (biounit: 3zds.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 2PA7 TYD None
2 5BVE 4VG 2.21607
3 1MJJ HAL 11.0132
Pocket No.: 25; Query (leader) PDB : 3ZDS; Ligand: HMQ; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 25) in the query (biounit: 3zds.bio3) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 26; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 26) in the query (biounit: 3zds.bio3) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 27; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 27) in the query (biounit: 3zds.bio3) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 28; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 28) in the query (biounit: 3zds.bio3) has 14 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 29; Query (leader) PDB : 3ZDS; Ligand: OMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 29) in the query (biounit: 3zds.bio3) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 30; Query (leader) PDB : 3ZDS; Ligand: HMQ; Similar sites found with APoc: 1
This union binding pocket(no: 30) in the query (biounit: 3zds.bio3) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 3RG9 WRA 2.5
APoc FAQ
Feedback