Receptor
PDB id Resolution Class Description Source Keywords
3X00 1.3 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF THE CORE STREPTAVIDIN MUTANT V212 (Y22S/N23D/S27D/S45N/Y83S/R84K/E101D/R103K/E116N) COMPLEXEDI MINOBIOTIN LONG TAIL (BIS-IMNTAIL) AT 1.3 A RESOLUTION STREPTOMYCES AVIDINII BETA-BARREL BIOTIN BINDING PROTEIN
Ref.: STRUCTURE-BASED DESIGN AND SYNTHESIS OF A BIVALENT IMINOBIOTIN ANALOG SHOWING STRONG AFFINITY TOWARD A IMMUNOGENIC STREPTAVIDIN MUTANT BIOSCI.BIOTECHNOL.BIOCHEM. 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ZOF ZOF EDN D:201;
Valid;
none;
Kd = 0.83 nM
740.076 n/a S1C(C...
ZOF EDN ZOF B:201;
Valid;
none;
Kd = 0.83 nM
742.092 n/a S1C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3X00 1.3 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF THE CORE STREPTAVIDIN MUTANT V212 (Y22S/N23D/S27D/S45N/Y83S/R84K/E101D/R103K/E116N) COMPLEXEDI MINOBIOTIN LONG TAIL (BIS-IMNTAIL) AT 1.3 A RESOLUTION STREPTOMYCES AVIDINII BETA-BARREL BIOTIN BINDING PROTEIN
Ref.: STRUCTURE-BASED DESIGN AND SYNTHESIS OF A BIVALENT IMINOBIOTIN ANALOG SHOWING STRONG AFFINITY TOWARD A IMMUNOGENIC STREPTAVIDIN MUTANT BIOSCI.BIOTECHNOL.BIOCHEM. 2015
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 473 families.
1 3WZQ Kd = 0.00000145 M ZOF C16 H28 N4 O3 S [H]/N=C/1N....
2 3X00 Kd = 0.83 nM ZOF ZOF EDN n/a n/a
70% Homology Family (108)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 355 families.
1 2G5L - FME ASP VAL GLU ALA TRP LEU n/a n/a
2 3WZO - ZOE C16 H27 N3 O5 S C1[C@H]2[C....
3 2RTM - IMI C10 H17 N3 O2 S C1[C@H]2[C....
4 4Y59 Kd = 5.8 uM T21 C14 H8 F3 N O2 c1cc(cc(c1....
5 1NQM - BTN C10 H16 N2 O3 S C1[C@H]2[C....
6 1VWQ - HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
7 1NC9 - IMI C10 H17 N3 O2 S C1[C@H]2[C....
8 2RTI - GLL C4 H6 N4 O2 C12C(NC(=O....
9 5B5G Kd = 5.6 uM 6FX C14 H10 N2 O4 COC(=O)c1c....
10 4Y5D Kd = 1.2 uM MT6 C15 H11 N O4 COC(=O)c1c....
11 1SRJ - NAB C17 H12 N2 O3 c1ccc2c(c1....
12 4CPF - LH3 C32 H34 N4 O6 S COC(=O)c1c....
13 1NDJ - BTN C10 H16 N2 O3 S C1[C@H]2[C....
14 2IZL Kd = 1 uM IMI C10 H17 N3 O2 S C1[C@H]2[C....
15 2RTJ - GLL C4 H6 N4 O2 C12C(NC(=O....
16 1SWR Kd = 0.12 uM BTN C10 H16 N2 O3 S C1[C@H]2[C....
17 1SWE - BTN C10 H16 N2 O3 S C1[C@H]2[C....
18 1SRF - MTB C17 H18 N2 O3 CC(C)(C)c1....
19 1RXJ - BNI C16 H20 N4 O4 S c1cc(ccc1N....
20 1SWK Ka ~ 1000000000000 M^-1 BTN C10 H16 N2 O3 S C1[C@H]2[C....
21 2RTR - IMI C10 H17 N3 O2 S C1[C@H]2[C....
22 4CPI - LH4 C36 H44 N6 O8 S3 c1cc(c(c(c....
23 2RTD - BTN C10 H16 N2 O3 S C1[C@H]2[C....
24 3WYQ - BTN C10 H16 N2 O3 S C1[C@H]2[C....
25 2RTK - GLL C4 H6 N4 O2 C12C(NC(=O....
26 1LCZ - BH7 C16 H27 N3 O4 S C1[C@H]2[C....
27 1SWN Ka ~ 1000000000000 M^-1 BTN C10 H16 N2 O3 S C1[C@H]2[C....
28 1RST Kd = 37 uM ALA TRP ARG HIS PRO GLN PHE GLY GLY n/a n/a
29 2RTG - BTN C10 H16 N2 O3 S C1[C@H]2[C....
30 1SLE Kd = 670 nM ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
31 4CPE - LUV C31 H34 N4 O3 S c1ccc(cc1)....
32 2RTE - BTN C10 H16 N2 O3 S C1[C@H]2[C....
33 3WZP - ZOF C16 H28 N4 O3 S [H]/N=C/1N....
34 1VWF Kd ~ 2200 nM ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
35 2RTO - IMI C10 H17 N3 O2 S C1[C@H]2[C....
36 1SWT - BTN C10 H16 N2 O3 S C1[C@H]2[C....
37 1SWP Ka = 100000000 M^-1 BTN C10 H16 N2 O3 S C1[C@H]2[C....
38 1VWG - ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
39 2RTF - BTN C10 H16 N2 O3 S C1[C@H]2[C....
40 1VWC - ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
41 1STS Ki = 10 uM PHE CYS HIS PRO GLN ASN THR NH2 n/a n/a
42 2IZI - BTN C10 H16 N2 O3 S C1[C@H]2[C....
43 1VWN Kd ~ 1500 nM ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
44 2IZF - BTN C10 H16 N2 O3 S C1[C@H]2[C....
45 1SWD - BTN C10 H16 N2 O3 S C1[C@H]2[C....
46 1LCW - SHM C11 H18 N2 O3 S C1[C@H]2[C....
47 1RXK - BNI C16 H20 N4 O4 S c1cc(ccc1N....
48 1SRG Ki = 5 uM MHB C14 H12 N2 O3 Cc1cc(ccc1....
49 1I9H - BNI C16 H20 N4 O4 S c1cc(ccc1N....
50 1VWR - HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
51 2IZH - BTN C10 H16 N2 O3 S C1[C@H]2[C....
52 2RTP - IMI C10 H17 N3 O2 S C1[C@H]2[C....
53 1SLD Kd = 270 nM ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
54 1KL3 Kd = 1.37 uM ASN TRP SER HIS PRO GLN PHE GLU LYS n/a n/a
55 1DF8 Kd = 0.2 nM BTN C10 H16 N2 O3 S C1[C@H]2[C....
56 3T6F - BTN C10 H16 N2 O3 S C1[C@H]2[C....
57 1VWO - ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
58 1VWK - HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
59 1SLG Kd = 125 uM PHE SER HIS PRO GLN ASN THR n/a n/a
60 2RTQ - IMI C10 H17 N3 O2 S C1[C@H]2[C....
61 1N43 - BTN C10 H16 N2 O3 S C1[C@H]2[C....
62 3WZN - BTN C10 H16 N2 O3 S C1[C@H]2[C....
63 1VWD - ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
64 2Y3F - BTN C10 H16 N2 O3 S C1[C@H]2[C....
65 1VWL Kd = 2.33 uM HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
66 1VWA - PHE SER HIS PRO GLN ASN THR n/a n/a
67 2IZG - BTN C10 H16 N2 O3 S C1[C@H]2[C....
68 3MG5 - BTN C10 H16 N2 O3 S C1[C@H]2[C....
69 1SRI Ki = 0.83 uM DMB C15 H14 N2 O3 Cc1cc(cc(c....
70 1KL5 Kd = 1 uM ASN TRP SER HIS PRO GLN PHE GLU LYS n/a n/a
71 1VWH - ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
72 1PTS - PHE SER HIS PRO GLN ASN THR n/a n/a
73 1MK5 - BTN C10 H16 N2 O3 S C1[C@H]2[C....
74 1LUQ - BTN C10 H16 N2 O3 S C1[C@H]2[C....
75 1VWB - ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
76 2IZK - GLL C4 H6 N4 O2 C12C(NC(=O....
77 1VWE - ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
78 2RTN - IMI C10 H17 N3 O2 S C1[C@H]2[C....
79 1MEP - BTN C10 H16 N2 O3 S C1[C@H]2[C....
80 3WYP - BTN C10 H16 N2 O3 S C1[C@H]2[C....
81 2RTL - IMI C10 H17 N3 O2 S C1[C@H]2[C....
82 1N9M - BTN C10 H16 N2 O3 S C1[C@H]2[C....
83 1VWI - HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
84 2IZJ - BTN C10 H16 N2 O3 S C1[C@H]2[C....
85 1STR Ki = 17 uM ACE CYS HIS PRO GLN ASN THR NH2 n/a n/a
86 1VWP - ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
87 1VWJ - HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
88 1LCV - SNR C9 H14 N2 O3 S C1[C@H]2[C....
89 1RSU Kd = 72 uM SER ASN TRP SER HIS PRO GLN PHE GLU LYS n/a n/a
90 2RTH - GLL C4 H6 N4 O2 C12C(NC(=O....
91 5B5F Kd = 5.6 uM 6F3 C14 H12 N2 O4 S CNS(=O)(=O....
92 2F01 Kd ~ 0.1 pM BTN C10 H16 N2 O3 S C1[C@H]2[C....
93 1VWM - ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
94 2GH7 Kd ~ 0.1 pM BTN C10 H16 N2 O3 S C1[C@H]2[C....
95 3RDQ Kd = 0.49 nM DTB C10 H18 N2 O3 C[C@H]1[C@....
96 3RDO Kd = 0.14 nM BTN C10 H16 N2 O3 S C1[C@H]2[C....
97 3RDM Kd = 0.14 nM BTN C10 H16 N2 O3 S C1[C@H]2[C....
98 3WZQ Kd = 0.00000145 M ZOF C16 H28 N4 O3 S [H]/N=C/1N....
99 3X00 Kd = 0.83 nM ZOF ZOF EDN n/a n/a
100 2QCB - KYS C24 H31 Cl N5 O4 Ru S2 c1cc(ccc1N....
101 5IRA - 9RU C31 H41 Cl2 N5 O2 Ru S Cc1cc(c(c(....
102 5F2B - 9RU C31 H41 Cl2 N5 O2 Ru S Cc1cc(c(c(....
103 4OKA - 5IR C18 H26 Ir N5 O4 S2 c1cc(ccc1N....
104 4GJV - 0OD C21 H32 Cl3 N3 O2 Rh S CC12=C3([R....
105 4GJS - 0OD C21 H32 Cl3 N3 O2 Rh S CC12=C3([R....
106 2WPU Kd < 60 nM KYT C24 H39 Cl N5 O2 Ru S CC1=[CH]2C....
107 3PK2 - 4IR C28 H45 Cl Ir N5 O4 S2 C[CH]12[CH....
108 4EKV Kd = 0.00000145 M BTN C10 H16 N2 O3 S C1[C@H]2[C....
50% Homology Family (139)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 272 families.
1 2G5L - FME ASP VAL GLU ALA TRP LEU n/a n/a
2 3WZO - ZOE C16 H27 N3 O5 S C1[C@H]2[C....
3 2RTM - IMI C10 H17 N3 O2 S C1[C@H]2[C....
4 4Y59 Kd = 5.8 uM T21 C14 H8 F3 N O2 c1cc(cc(c1....
5 1NQM - BTN C10 H16 N2 O3 S C1[C@H]2[C....
6 1VWQ - HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
7 1NC9 - IMI C10 H17 N3 O2 S C1[C@H]2[C....
8 2RTI - GLL C4 H6 N4 O2 C12C(NC(=O....
9 5B5G Kd = 5.6 uM 6FX C14 H10 N2 O4 COC(=O)c1c....
10 4Y5D Kd = 1.2 uM MT6 C15 H11 N O4 COC(=O)c1c....
11 1SRJ - NAB C17 H12 N2 O3 c1ccc2c(c1....
12 4CPF - LH3 C32 H34 N4 O6 S COC(=O)c1c....
13 1NDJ - BTN C10 H16 N2 O3 S C1[C@H]2[C....
14 2IZL Kd = 1 uM IMI C10 H17 N3 O2 S C1[C@H]2[C....
15 2RTJ - GLL C4 H6 N4 O2 C12C(NC(=O....
16 1SWR Kd = 0.12 uM BTN C10 H16 N2 O3 S C1[C@H]2[C....
17 1SWE - BTN C10 H16 N2 O3 S C1[C@H]2[C....
18 1SRF - MTB C17 H18 N2 O3 CC(C)(C)c1....
19 1RXJ - BNI C16 H20 N4 O4 S c1cc(ccc1N....
20 1SWK Ka ~ 1000000000000 M^-1 BTN C10 H16 N2 O3 S C1[C@H]2[C....
21 2RTR - IMI C10 H17 N3 O2 S C1[C@H]2[C....
22 4CPI - LH4 C36 H44 N6 O8 S3 c1cc(c(c(c....
23 2RTD - BTN C10 H16 N2 O3 S C1[C@H]2[C....
24 3WYQ - BTN C10 H16 N2 O3 S C1[C@H]2[C....
25 2RTK - GLL C4 H6 N4 O2 C12C(NC(=O....
26 1LCZ - BH7 C16 H27 N3 O4 S C1[C@H]2[C....
27 1SWN Ka ~ 1000000000000 M^-1 BTN C10 H16 N2 O3 S C1[C@H]2[C....
28 1RST Kd = 37 uM ALA TRP ARG HIS PRO GLN PHE GLY GLY n/a n/a
29 2RTG - BTN C10 H16 N2 O3 S C1[C@H]2[C....
30 1SLE Kd = 670 nM ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
31 4CPE - LUV C31 H34 N4 O3 S c1ccc(cc1)....
32 2RTE - BTN C10 H16 N2 O3 S C1[C@H]2[C....
33 3WZP - ZOF C16 H28 N4 O3 S [H]/N=C/1N....
34 1VWF Kd ~ 2200 nM ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
35 2RTO - IMI C10 H17 N3 O2 S C1[C@H]2[C....
36 1SWT - BTN C10 H16 N2 O3 S C1[C@H]2[C....
37 1SWP Ka = 100000000 M^-1 BTN C10 H16 N2 O3 S C1[C@H]2[C....
38 1VWG - ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
39 2RTF - BTN C10 H16 N2 O3 S C1[C@H]2[C....
40 1VWC - ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
41 1STS Ki = 10 uM PHE CYS HIS PRO GLN ASN THR NH2 n/a n/a
42 2IZI - BTN C10 H16 N2 O3 S C1[C@H]2[C....
43 1VWN Kd ~ 1500 nM ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
44 2IZF - BTN C10 H16 N2 O3 S C1[C@H]2[C....
45 1SWD - BTN C10 H16 N2 O3 S C1[C@H]2[C....
46 1LCW - SHM C11 H18 N2 O3 S C1[C@H]2[C....
47 1RXK - BNI C16 H20 N4 O4 S c1cc(ccc1N....
48 1SRG Ki = 5 uM MHB C14 H12 N2 O3 Cc1cc(ccc1....
49 1I9H - BNI C16 H20 N4 O4 S c1cc(ccc1N....
50 1VWR - HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
51 2IZH - BTN C10 H16 N2 O3 S C1[C@H]2[C....
52 2RTP - IMI C10 H17 N3 O2 S C1[C@H]2[C....
53 1SLD Kd = 270 nM ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
54 1KL3 Kd = 1.37 uM ASN TRP SER HIS PRO GLN PHE GLU LYS n/a n/a
55 1DF8 Kd = 0.2 nM BTN C10 H16 N2 O3 S C1[C@H]2[C....
56 3T6F - BTN C10 H16 N2 O3 S C1[C@H]2[C....
57 1VWO - ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
58 1VWK - HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
59 1SLG Kd = 125 uM PHE SER HIS PRO GLN ASN THR n/a n/a
60 2RTQ - IMI C10 H17 N3 O2 S C1[C@H]2[C....
61 1N43 - BTN C10 H16 N2 O3 S C1[C@H]2[C....
62 3WZN - BTN C10 H16 N2 O3 S C1[C@H]2[C....
63 1VWD - ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
64 2Y3F - BTN C10 H16 N2 O3 S C1[C@H]2[C....
65 1VWL Kd = 2.33 uM HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
66 1VWA - PHE SER HIS PRO GLN ASN THR n/a n/a
67 2IZG - BTN C10 H16 N2 O3 S C1[C@H]2[C....
68 3MG5 - BTN C10 H16 N2 O3 S C1[C@H]2[C....
69 1SRI Ki = 0.83 uM DMB C15 H14 N2 O3 Cc1cc(cc(c....
70 1KL5 Kd = 1 uM ASN TRP SER HIS PRO GLN PHE GLU LYS n/a n/a
71 1VWH - ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
72 1PTS - PHE SER HIS PRO GLN ASN THR n/a n/a
73 1MK5 - BTN C10 H16 N2 O3 S C1[C@H]2[C....
74 1LUQ - BTN C10 H16 N2 O3 S C1[C@H]2[C....
75 1VWB - ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
76 2IZK - GLL C4 H6 N4 O2 C12C(NC(=O....
77 1VWE - ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
78 2RTN - IMI C10 H17 N3 O2 S C1[C@H]2[C....
79 1MEP - BTN C10 H16 N2 O3 S C1[C@H]2[C....
80 3WYP - BTN C10 H16 N2 O3 S C1[C@H]2[C....
81 2RTL - IMI C10 H17 N3 O2 S C1[C@H]2[C....
82 1N9M - BTN C10 H16 N2 O3 S C1[C@H]2[C....
83 1VWI - HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
84 2IZJ - BTN C10 H16 N2 O3 S C1[C@H]2[C....
85 1STR Ki = 17 uM ACE CYS HIS PRO GLN ASN THR NH2 n/a n/a
86 1VWP - ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 n/a n/a
87 1VWJ - HIS PRO GLN GLY PRO PRO CYS LYS NH2 LEA n/a n/a
88 1LCV - SNR C9 H14 N2 O3 S C1[C@H]2[C....
89 1RSU Kd = 72 uM SER ASN TRP SER HIS PRO GLN PHE GLU LYS n/a n/a
90 2RTH - GLL C4 H6 N4 O2 C12C(NC(=O....
91 5B5F Kd = 5.6 uM 6F3 C14 H12 N2 O4 S CNS(=O)(=O....
92 2F01 Kd ~ 0.1 pM BTN C10 H16 N2 O3 S C1[C@H]2[C....
93 1VWM - ACE CYS HIS PRO GLN PHE CYS NH2 n/a n/a
94 2GH7 Kd ~ 0.1 pM BTN C10 H16 N2 O3 S C1[C@H]2[C....
95 4JNJ - BTN C10 H16 N2 O3 S C1[C@H]2[C....
96 3SZJ - BTN C10 H16 N2 O3 S C1[C@H]2[C....
97 3T2W Kd = 0.00000145 M BTN C10 H16 N2 O3 S C1[C@H]2[C....
98 3RDQ Kd = 0.49 nM DTB C10 H18 N2 O3 C[C@H]1[C@....
99 3RDO Kd = 0.14 nM BTN C10 H16 N2 O3 S C1[C@H]2[C....
100 3RDM Kd = 0.14 nM BTN C10 H16 N2 O3 S C1[C@H]2[C....
101 1Y55 - BTN C10 H16 N2 O3 S C1[C@H]2[C....
102 1Y52 Kd = 0.00000145 M BTN C10 H16 N2 O3 S C1[C@H]2[C....
103 2FHN - BNI C16 H20 N4 O4 S c1cc(ccc1N....
104 2OF8 - BNI C16 H20 N4 O4 S c1cc(ccc1N....
105 2FHL - BNI C16 H20 N4 O4 S c1cc(ccc1N....
106 2OFB - BNI C16 H20 N4 O4 S c1cc(ccc1N....
107 3WZQ Kd = 0.00000145 M ZOF C16 H28 N4 O3 S [H]/N=C/1N....
108 3X00 Kd = 0.83 nM ZOF ZOF EDN n/a n/a
109 3VHH Ka = 400000000 M^-1 VHH C12 H20 N2 O3 S CN1[C@H]2C....
110 2A5B Kd = 117 uM 8HG C10 H13 N5 O5 C1[C@@H]([....
111 3VHM Ka = 15000 M^-1 NPK C20 H23 N3 O9 S C[C@H](c1c....
112 5IRU - B9P C26 H24 N2 O2 S c1cc2ccc3c....
113 1LDO - SNR C9 H14 N2 O3 S C1[C@H]2[C....
114 1IJ8 - BNI C16 H20 N4 O4 S c1cc(ccc1N....
115 3VHI Ka = 2300000 M^-1 VHI C18 H22 N2 O5 S c1ccc(cc1)....
116 2A8G Kd = 205 uM GNG C10 H13 N5 O4 c1nc2c(n1[....
117 4I60 Kd = 1.87 uM B1R C20 H16 N2 O2 Ru S C1[C@H]2[C....
118 5IRW - D9P C26 H26 N2 O2 C[C@H]1[C@....
119 2QCB - KYS C24 H31 Cl N5 O4 Ru S2 c1cc(ccc1N....
120 5IRA - 9RU C31 H41 Cl2 N5 O2 Ru S Cc1cc(c(c(....
121 5F2B - 9RU C31 H41 Cl2 N5 O2 Ru S Cc1cc(c(c(....
122 4OKA - 5IR C18 H26 Ir N5 O4 S2 c1cc(ccc1N....
123 4GJV - 0OD C21 H32 Cl3 N3 O2 Rh S CC12=C3([R....
124 4GJS - 0OD C21 H32 Cl3 N3 O2 Rh S CC12=C3([R....
125 2WPU Kd < 60 nM KYT C24 H39 Cl N5 O2 Ru S CC1=[CH]2C....
126 3PK2 - 4IR C28 H45 Cl Ir N5 O4 S2 C[CH]12[CH....
127 2ZSC - BTN C10 H16 N2 O3 S C1[C@H]2[C....
128 3EW2 - BTN C10 H16 N2 O3 S C1[C@H]2[C....
129 2C1S - BSO C10 H16 N2 O4 S C1[C@H]2[C....
130 2C1Q Kd ~ 0.1 pM BTN C10 H16 N2 O3 S C1[C@H]2[C....
131 4GGZ Kd = 0.066 nM BTN C10 H16 N2 O3 S C1[C@H]2[C....
132 4BJ8 Kd = 3.745 nM BTN C10 H16 N2 O3 S C1[C@H]2[C....
133 2UYW - BTN C10 H16 N2 O3 S C1[C@H]2[C....
134 2UZ2 - BTN C10 H16 N2 O3 S C1[C@H]2[C....
135 4GDA - BTN C10 H16 N2 O3 S C1[C@H]2[C....
136 1SWG Kd = 43.9 nM BTN C10 H16 N2 O3 S C1[C@H]2[C....
137 4GD9 - BTN C10 H16 N2 O3 S C1[C@H]2[C....
138 4BCS Kd = 103 nM BTN C10 H16 N2 O3 S C1[C@H]2[C....
139 4EKV Kd = 0.00000145 M BTN C10 H16 N2 O3 S C1[C@H]2[C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ZOF ZOF EDN; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 ZOF ZOF EDN 1 1
2 ZOF EDN ZOF 0.598291 0.981818
Ligand no: 2; Ligand: ZOF EDN ZOF; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 ZOF EDN ZOF 1 1
2 ZOF ZOF EDN 0.598291 0.981818
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3X00; Ligand: ZOF EDN ZOF; Similar sites found: 18
This union binding pocket(no: 1) in the query (biounit: 3x00.bio1) has 65 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2BOS GLA GAL GLC 0.008383 0.46845 None
2 2BOS GLA GAL 0.006999 0.46688 None
3 4IAW LIZ 0.03081 0.42919 None
4 1Y7P RIP 0.04341 0.42722 None
5 3RGA LSB 0.01729 0.43224 2.72109
6 4EE7 PIS 0.01181 0.46629 3.40136
7 3RJY GLC 0.04875 0.41278 3.40136
8 2CDO GAL AAL GAL AAL GAL AAL 0.02931 0.44379 4.08163
9 4YVN EBS 0.03391 0.43627 4.08163
10 4FFG LBS 0.02793 0.42585 4.7619
11 2Z77 HE7 0.01514 0.41762 5.03597
12 2HZQ STR 0.0106 0.46558 5.17241
13 4H6B 10Y 0.007908 0.46176 6.12245
14 4H6B 10X 0.009283 0.4538 6.12245
15 2UVF AD0 0.02468 0.43453 6.80272
16 1N5S ADL 0.03983 0.41337 8.03571
17 2G30 ALA ALA PHE 0.03379 0.43764 8.84354
18 5D6T NGA 0.02688 0.42267 13.6054
Pocket No.: 2; Query (leader) PDB : 3X00; Ligand: ZOF ZOF EDN; Similar sites found: 17
This union binding pocket(no: 2) in the query (biounit: 3x00.bio1) has 66 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2BOS GLA GAL GLC 0.008556 0.46845 None
2 2BOS GLA GAL 0.007145 0.46688 None
3 4IAW LIZ 0.02657 0.43332 None
4 1Y7P RIP 0.04086 0.42986 None
5 3RGA LSB 0.01774 0.43224 2.72109
6 4EE7 PIS 0.01205 0.46629 3.40136
7 3RJY GLC 0.04965 0.41278 3.40136
8 2CDO GAL AAL GAL AAL GAL AAL 0.02988 0.44379 4.08163
9 4FFG LBS 0.02847 0.42585 4.7619
10 2Z77 HE7 0.01559 0.41762 5.03597
11 2HZQ STR 0.01085 0.46558 5.17241
12 4H6B 10Y 0.008111 0.46176 6.12245
13 4H6B 10X 0.01017 0.45226 6.12245
14 2UVF AD0 0.02526 0.43453 6.80272
15 1N5S ADL 0.0408 0.41337 8.03571
16 2G30 ALA ALA PHE 0.03439 0.43764 8.84354
17 5D6T NGA 0.02738 0.42267 13.6054
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