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Receptor
PDB id Resolution Class Description Source Keywords
3WYF 2.22 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF XPO1P-YRB2P-GSP1P-GTP COMPLEX SACCHAROMYCES CEREVISIAE AWRI796 HEAT REPEAT NUCLEAR EXPORT GTP-BINDING PROTEIN-GTP-BINDINGINHIBITOR COMPLEX
Ref.: STRUCTURAL INSIGHTS INTO HOW YRB2P ACCELERATES THE OF THE XPO1P NUCLEAR EXPORT COMPLEX CELL REP V. 9 983 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GTP A:301;
D:301;
Valid;
Valid;
none;
none;
submit data
523.18 C10 H16 N5 O14 P3 c1nc2...
MG A:302;
D:302;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3WYF 2.22 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF XPO1P-YRB2P-GSP1P-GTP COMPLEX SACCHAROMYCES CEREVISIAE AWRI796 HEAT REPEAT NUCLEAR EXPORT GTP-BINDING PROTEIN-GTP-BINDINGINHIBITOR COMPLEX
Ref.: STRUCTURAL INSIGHTS INTO HOW YRB2P ACCELERATES THE OF THE XPO1P NUCLEAR EXPORT COMPLEX CELL REP V. 9 983 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3WYF - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3WYF - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 3WYF - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GTP; Similar ligands found: 156
No: Ligand ECFP6 Tc MDL keys Tc
1 GTP 1 1
2 GP3 0.921053 0.973684
3 GDP 0.909091 1
4 GSP 0.853659 0.948718
5 GNH 0.82716 0.986667
6 G1R 0.819277 0.986667
7 GAV 0.811765 0.961039
8 9GM 0.809524 0.973684
9 GNP 0.809524 0.973684
10 GCP 0.797619 0.973684
11 5GP 0.797468 0.986486
12 G 0.797468 0.986486
13 GMV 0.764706 0.973684
14 G2R 0.764045 0.961039
15 G5P 0.755319 0.973684
16 GTG 0.752688 0.936709
17 G2P 0.747126 0.961039
18 G3A 0.744681 0.973684
19 GDD 0.741935 0.961039
20 GDC 0.741935 0.961039
21 GKE 0.741935 0.961039
22 0O2 0.736264 0.986486
23 GP2 0.729412 0.961039
24 6CK 0.726316 0.936709
25 Y9Z 0.723404 0.902439
26 GPG 0.717391 0.961039
27 GFB 0.715789 0.961039
28 GDR 0.715789 0.961039
29 GPD 0.704082 0.925
30 GKD 0.693878 0.961039
31 JB2 0.693878 0.961039
32 GDX 0.686869 0.973684
33 ALF 5GP 0.685393 0.888889
34 GH3 0.681319 0.973333
35 YGP 0.677083 0.901235
36 G3D 0.67033 0.986486
37 GDP AF3 0.659574 0.888889
38 ALF GDP 0.659574 0.888889
39 GDP ALF 0.659574 0.888889
40 DGT 0.659341 0.923077
41 GMP 0.658228 0.88
42 G4P 0.655914 0.986486
43 JB3 0.653846 0.948718
44 NGD 0.647619 0.961039
45 CAG 0.642202 0.880952
46 2MD 0.62963 0.891566
47 MGP 0.619565 0.961039
48 U2G 0.616822 0.936709
49 6G0 0.612903 0.961039
50 MGD 0.612613 0.891566
51 TPG 0.608696 0.840909
52 CG2 0.605505 0.936709
53 GDP 7MG 0.601942 0.911392
54 FEG 0.601852 0.879518
55 G G 0.598039 0.948052
56 ZGP 0.59633 0.869048
57 PGD 0.591304 0.925
58 MD1 0.591304 0.891566
59 3GP 0.590909 0.946667
60 GPX 0.581633 0.946667
61 DGI 0.580645 0.923077
62 IDP 0.576087 0.972973
63 DBG 0.567797 0.948718
64 2GP 0.555556 0.96
65 FE9 0.555556 0.776596
66 G4M 0.547619 0.880952
67 BGO 0.544643 0.924051
68 GCP G 0.543689 0.921053
69 ATP 0.537634 0.92
70 HEJ 0.537634 0.92
71 G1G 0.533898 0.925
72 AQP 0.531915 0.92
73 5FA 0.531915 0.92
74 A G 0.525862 0.935065
75 G A A A 0.525862 0.923077
76 U A G G 0.521368 0.935065
77 HFD 0.520833 0.873418
78 R5I 0.520408 0.946667
79 R7I 0.520408 0.946667
80 01G 0.518868 0.902439
81 P2G 0.510638 0.883117
82 ITT 0.510638 0.868421
83 AKW 0.504348 0.890244
84 GGM 0.504274 0.901235
85 G1R G1R 0.504065 0.924051
86 DGP 0.5 0.910256
87 PGD O 0.5 0.850575
88 MGO 0.5 0.864198
89 DG 0.5 0.910256
90 P1G 0.5 0.871795
91 GTA 0.495495 0.936709
92 PRT 0.490741 0.959459
93 B4P 0.489362 0.894737
94 AP5 0.489362 0.894737
95 IMP 0.489362 0.959459
96 G U 0.487179 0.9
97 7DT 0.484536 0.906667
98 GPC 0.479339 0.879518
99 G C 0.478992 0.9
100 BA3 0.478723 0.894737
101 ADP 0.473684 0.92
102 G2Q 0.471698 0.961039
103 6YZ 0.470588 0.896104
104 G7M 0.46875 0.948052
105 C1Z 0.462963 0.986486
106 25L 0.458716 0.907895
107 A2D 0.457447 0.894737
108 RGT 0.45045 0.909091
109 AGS 0.45 0.873418
110 SAP 0.45 0.873418
111 SGP 0.44898 0.82716
112 A4P 0.445378 0.869048
113 G G G RPC 0.442623 0.875
114 ANP 0.441176 0.896104
115 ACQ 0.441176 0.896104
116 8GT 0.441176 0.875
117 APC G U 0.44 0.886076
118 AT4 0.438776 0.884615
119 G U34 0.438017 0.888889
120 6AD 0.436893 0.841463
121 G G G C 0.433071 0.9125
122 UP5 0.432203 0.873418
123 PCG 0.431373 0.933333
124 C2E 0.431373 0.921053
125 35G 0.431373 0.933333
126 A G C C 0.429688 0.911392
127 T99 0.427184 0.884615
128 5GP 5GP 0.427184 0.883117
129 TAT 0.427184 0.884615
130 AR6 0.425743 0.894737
131 APR 0.425743 0.894737
132 7DD 0.424242 0.906667
133 AN2 0.424242 0.907895
134 DG DG 0.423423 0.865854
135 AD9 0.421569 0.896104
136 M33 0.42 0.883117
137 7D4 0.42 0.835443
138 UCG 0.419847 0.911392
139 HDV 0.419048 0.825
140 H6Y 0.419048 0.946667
141 G C C C 0.416667 0.924051
142 ACP 0.415842 0.896104
143 T5A 0.414634 0.802326
144 A1R 0.412844 0.839506
145 ADQ 0.412844 0.871795
146 MGQ 0.412844 0.935897
147 A3R 0.412844 0.839506
148 MGT 0.411215 0.823529
149 A G U 0.410072 0.888889
150 93A 0.41 0.833333
151 A22 0.407407 0.907895
152 CA0 0.405941 0.896104
153 ATF 0.40566 0.884615
154 AGO 0.404762 0.888889
155 MGV 0.401786 0.890244
156 CGP 0.4 0.86747
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3WYF; Ligand: GTP; Similar sites found with APoc: 551
This union binding pocket(no: 1) in the query (biounit: 3wyf.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 2F5X ASP 2.88462
2 1CT9 GLN 3.19635
3 3AI3 SOL 3.19635
4 6AR9 3L4 3.30882
5 1J1R ADE 3.36134
6 5U32 GDP 3.38983
7 5ZRR 9J3 3.39623
8 1SVM ATP 3.44828
9 4O48 ASP 3.65297
10 1W5T ANP 3.65297
11 1W5T ADP 3.65297
12 1D8T GDP 3.78151
13 2BVN GNP 3.78151
14 5I0H ADP BEF 3.78151
15 1P72 ADP 3.78151
16 2OFW ADX 3.84615
17 2HCJ GDP 3.8806
18 3FSY SCA 3.91566
19 2YPI PGA 4.04858
20 6HKE LMR 4.08805
21 2RCN GDP 4.10959
22 2QQ0 ANP 4.10959
23 4YS0 ADP 4.12621
24 5BN3 ADP 4.20168
25 3QOX SAH 4.20168
26 4GBM A3P 4.20168
27 2NCD ADP 4.20168
28 5H4S RAM 4.22535
29 2WOJ ADP ALF 4.23729
30 2PEZ GGZ 4.46927
31 2PEZ DAT 4.46927
32 1KK1 GNP 4.56621
33 2OG2 MLI 4.56621
34 6DEF GCP 4.60358
35 1S3G AP5 4.60829
36 1F9V ADP 4.61095
37 2ZFI ADP 4.62185
38 3ZQ6 ADP ALF 4.62185
39 4HE2 AMP 4.62185
40 4IOK XPO 4.62185
41 1X6V ADP 4.62185
42 4IOK ADP 4.62185
43 1QHG ATP 4.62185
44 1H5R THM 4.77816
45 5EXT ADP 5
46 1G6H ADP 5.02283
47 2XAU ADP 5.02283
48 3FVQ ATP 5.02283
49 2ATJ BHO 5.02283
50 1E2K TMC 5.02283
51 3KC1 2T6 5.02283
52 1O8B ABF 5.02283
53 1NST A3P 5.02283
54 4RW3 DKA 5.02283
55 1GOJ ADP 5.04202
56 5ZXD ATP 5.04202
57 4MKG AP5 5.06912
58 4AG5 ADP 5.10204
59 1QF5 RPL 5.10441
60 1QF5 GDP 5.10441
61 4ZNL BEF ADP 5.10949
62 1KO8 6PG 5.14286
63 5T63 ALA ALA ALA ALA 5.17711
64 3VX3 ADP 5.24194
65 1U3G ADP 5.29101
66 4ZG4 VO4 ADP 5.46218
67 3TK1 GDP 5.46218
68 5Y6N ADP 5.46218
69 5Z69 AGS 5.46218
70 5O96 SAM 5.46218
71 1MJT ITU 5.4755
72 3MD0 GDP 5.47945
73 2Q8M AMP 5.47945
74 4MDB RLT 5.47945
75 5XKT GNP 5.5
76 5LX9 OLB 5.53746
77 1BG2 ADP 5.53846
78 4TTQ ATP 5.5814
79 5KUT GDP 5.82011
80 5ZBR ANP 5.86667
81 1XMV ADP 5.88235
82 4Q1A 2XZ 5.88235
83 4Q1A UDP 5.88235
84 3DC4 ADP 5.93607
85 1WF3 GNP 5.93607
86 1RRC ADP 5.93607
87 4WZ6 ATP 5.93607
88 1DAR GDP 5.93607
89 2DPY ADP 5.93607
90 1G41 ADP 5.93607
91 2JLR ANP 5.93607
92 5X40 ACP 5.93607
93 3QKT ANP 5.93607
94 1QAN SAH 5.93607
95 1U2Z SAH 5.93607
96 3QPB R1P 5.93607
97 3DZD ADP 5.97826
98 4KBF AMP 6.0274
99 6B4K ANP 6.04651
100 2JK0 ASP 6.15385
101 3B5J 12D 6.17284
102 1TE2 PGA 6.19469
103 1IHU AF3 6.28183
104 1IHU ADP 6.28183
105 2AWN ADP 6.30252
106 2GK6 ADP 6.30252
107 3L6C MLI 6.30252
108 2C9O ADP 6.35965
109 4P4T GDP 6.38889
110 2XTZ GSP 6.39269
111 4A4Z ANP 6.39269
112 3BP1 GUN 6.39269
113 3MBI HSX 6.39269
114 1FNN ADP 6.42674
115 4LJ9 ACP 6.48968
116 3UIE ANP 6.5
117 5N69 ADP 6.53266
118 2QEN ADP 6.57143
119 1OYY AGS 6.69216
120 5KSZ GCP 6.72269
121 1IN4 ADP 6.72269
122 2FAH GDP 6.72269
123 3FJG 3PG 6.72269
124 1DCP HBI 6.73077
125 4FCW ADP 6.75241
126 2PL3 ADP 6.77966
127 1V8K ANP 6.82927
128 1YRB GDP 6.84932
129 3EC1 GDP 6.84932
130 3ZFD ANP 6.84932
131 1OXV ANP 6.84932
132 1XKV ATP 6.84932
133 2CE7 ADP 6.84932
134 1T9D P22 6.84932
135 3VM7 GLC 6.84932
136 1OS1 ATP 6.84932
137 1OS1 PYR 6.84932
138 1SGJ OAA 6.84932
139 5MEX PAP 6.84932
140 1ZIN AP5 6.91244
141 2BEK ATP 7.00389
142 6AIC AMP 7.00935
143 6GSG RCO 7.04961
144 3TBK ANP 7.14286
145 1YTM ATP 7.14286
146 4PVR ASP 7.14286
147 2BO4 FLC 7.14286
148 5NUL FMN 7.24638
149 5GVR LMR 7.26496
150 3B9Q MLI 7.28477
151 6G14 G4P 7.30594
152 4NON GDP 7.30594
153 1P9B GDP 7.30594
154 2FSH ANP 7.30594
155 1CR1 TTP 7.30594
156 6B8B ADP 7.30594
157 1P9B HDA 7.30594
158 2P3V SRT 7.30594
159 1XX6 ADP 7.32984
160 1VHT BA3 7.33945
161 4BQS K2Q 7.38636
162 4BQS ADP 7.38636
163 4X8O AP5 7.47664
164 5L3R GCP 7.50853
165 2O0J ADP 7.53247
166 1LVK MNT BEF 7.56302
167 5MZN ADP 7.56302
168 3G5N PB2 7.56302
169 1VKJ A3P 7.56302
170 2WPB ZZI 7.56579
171 1M7G AV2 7.58294
172 1M7G ADP 7.58294
173 1M7G ADX 7.58294
174 4GAH 0ET 7.6555
175 1V3S ATP 7.75862
176 4RD0 GDP 7.76256
177 2XT3 ADP 7.76256
178 3AB3 GDP 7.76256
179 2Z5F A3P 7.76256
180 2ODE ALF GDP 7.80142
181 4OI4 ATP 7.82609
182 4MKF AP5 7.8341
183 3NHB ADP 7.84314
184 5FII PHE 7.84314
185 5JVB 2PO 7.85714
186 2GDJ ANP 7.95455
187 5FG3 GDP 7.98319
188 2Q2Y ADP 7.98319
189 4IDN GNP 7.98319
190 2Q2Y MKR 7.98319
191 4LC1 GDP 8.01187
192 1TAD GDP 8.02469
193 1TAD ALF 8.02469
194 1Z83 AP5 8.16327
195 3P4X ADP 8.21918
196 2ZPA ADP 8.21918
197 1L2T ATP 8.21918
198 4PJ3 ANP 8.21918
199 1M0S CIT 8.21918
200 5DT6 GLU 8.2397
201 3KIH GDL 8.24742
202 3B7G ANP 8.26087
203 1RZM PEP 8.28402
204 2VVG ADP 8.28571
205 1FP6 ADP 8.3045
206 4MZQ 1VU 8.33333
207 2QZ4 ADP 8.39695
208 2C77 GNP 8.40336
209 2C78 GNP 8.40336
210 2ZR9 DTP 8.40336
211 2B8W ALF 5GP 8.40336
212 1F5N GNP 8.40336
213 1P4V GLY 8.40336
214 3R7F CP 8.40336
215 5KSP GDP 8.42105
216 5BQ5 ADP BEF 8.46561
217 6AU6 GDP 8.6758
218 1PUJ GNP 8.6758
219 5AK0 8V1 8.6758
220 3BFX A3P 8.6758
221 4FRZ ADP 8.6758
222 3BOS CDP 8.67769
223 1WY7 SAH 8.69565
224 2RGX AP5 8.73786
225 3FB4 AP5 8.7963
226 2D2F ADP 8.8
227 1YQT ADP 8.82353
228 5YV5 ADP 8.82353
229 4IEE AGS 8.82353
230 3DCJ THH 8.83721
231 1U0J ADP 9.13242
232 4WOH 4NP 9.13242
233 2HF9 GSP 9.29204
234 1U4J MAN 9.32203
235 2XTN GTP 9.40171
236 2BQP GLC 9.40171
237 1NRJ GTP 9.49367
238 4LPS GDP 9.58904
239 1G3Q ADP 9.58904
240 1ION ADP 9.58904
241 3FYH ADP 9.62733
242 1JJV ATP 9.70874
243 1IK4 PGH 9.86842
244 1APZ ASP 9.92908
245 4QM7 GTP 9.94152
246 3BFV ADP 9.9631
247 3VPD BUA 9.96441
248 3VPD CIT 9.96441
249 4YMU ATP 10
250 1JI0 ATP 10.0457
251 6CS8 F9Y 10.0457
252 5E5U MLI 10.0503
253 2CHG ANP 10.177
254 4QOS ADP 10.1887
255 1SVI GDP 10.2564
256 2WDQ TEO 10.4348
257 3WXM GTP 10.5023
258 5L3W GDP 10.5023
259 2IS6 ADP 10.5023
260 4GOX A3P 10.5023
261 5I34 GDP 10.5023
262 2IYL GDP 10.5042
263 5LB3 ADP 10.5618
264 5ZB0 TYD 10.6061
265 5ZB0 ADP 10.6061
266 3MWL 8OX 10.628
267 1RJ9 GCP 10.6667
268 3PQC GDP 10.7692
269 4HSE ADP 10.8312
270 1G8S MET 10.8696
271 4PX9 ADP 10.9589
272 1DAK DPU 10.9589
273 1DAK ADP 10.9589
274 4JLS 3ZE 11.1842
275 1BO4 COA 11.3095
276 1SKQ GDP 11.3445
277 3COB ADP 11.4155
278 4HI0 GDP 11.4155
279 4R43 GDP 11.4155
280 1NY5 ADP 11.4155
281 3HU3 AGS 11.4155
282 2HK9 ATR 11.4155
283 1TL2 NDG 11.4407
284 4HEQ FMN 11.6438
285 1G7C 5GP 11.7021
286 4KFU ACP 11.7925
287 2GKS ADP 11.8721
288 5UIV ADP 11.8721
289 3DKP ADP 11.8721
290 4D81 ADP 11.8721
291 2J5V PCA 11.8721
292 4R2I ANP 11.9048
293 1W7J ADP BEF 11.9205
294 1NJF ADP 12.1849
295 1NJF AGS 12.1849
296 3IUY AMP 12.2807
297 5CK5 GDP 12.3288
298 4JZ8 CIT 12.3288
299 1AKY AP5 12.3288
300 4CVN ADP 12.4088
301 2IXE ATP 12.5461
302 3W5J GDP 12.7451
303 4NCN GTP 12.7854
304 1G7S GDP 12.7854
305 1SQ5 ADP 12.7854
306 3AB4 THR 12.7854
307 4QRH 0O2 12.8571
308 1FQK ALF 12.9252
309 1FQK GDP 12.9252
310 1W0J ADP 13.0252
311 2CK3 ANP 13.0252
312 3RLF ANP 13.0252
313 1W0J ADP BEF 13.0252
314 2CK3 ADP 13.0252
315 1IWE IMP 13.0252
316 1AQU A3P 13.1313
317 2DT9 THR 13.1737
318 1GXU 2HP 13.1868
319 1CS4 GSP 13.2075
320 1T5C ADP 13.242
321 6CAM BGC 13.242
322 6C90 ADP 13.4615
323 2V7Q ADP 13.6364
324 2V7Q ATP 13.6364
325 1JJ7 ADP 13.6986
326 3KJI ADP 13.6986
327 1H65 GDP 13.6986
328 1YXM ADE 13.6986
329 3KTA AP5 13.7363
330 3CX8 GSP 13.7931
331 4H1V GNP 13.8211
332 4NU0 AP5 13.8249
333 3BER AMP 13.8655
334 2E9L PLM 13.8655
335 3H4S ADP 14.0741
336 1BH2 GSP 14.1553
337 1SVK ALF GDP 14.1553
338 1TQ4 GDP 14.1553
339 5WXU FLC 14.2857
340 2GWH A3P 14.2857
341 5L3V GDP 14.3813
342 2CDN ADP 14.4279
343 5L3S GNP 14.4295
344 1Y3A GDP 14.6119
345 1Z6T ADP 14.6119
346 1KJ8 GAR 14.6119
347 3A4M ADP 14.6154
348 4U00 ADP 14.7541
349 1F2U ATP 15.0685
350 4WZA ACP 15.126
351 1R6B ADP 15.126
352 4WZA ADP 15.126
353 4DCT GDP 15.5251
354 1K6M AGS 15.5251
355 2Z49 AMG 15.5251
356 5TSH ADP 15.5462
357 5TSH ANP 15.5462
358 4IHQ ADP 15.5462
359 1XP8 AGS 15.9664
360 2VB6 ADP BEF 16.1074
361 3IIJ ADP 16.1111
362 1LVG ADP 16.1616
363 3RC3 ANP 16.3866
364 1D2E GDP 16.4384
365 2WJG GDP 16.4894
366 5HCN GCP 16.895
367 2BIF SIN 16.895
368 2BIF ANP 16.895
369 3KIF GDL 16.9811
370 3H86 AP5 17.1875
371 5M04 GDP 17.2269
372 2W58 ADP 17.3267
373 4K91 SIN 17.341
374 4XTR ADP 17.5115
375 4XTR ATP 17.5115
376 4XVU ATP 17.5115
377 1G6O ADP 17.6471
378 4UZI IMD 17.8082
379 3E70 GDP 17.9878
380 3QF7 ANP 18
381 3FWY ADP 18.1529
382 4WOP CTP 18.2222
383 1MKY GDP 18.2648
384 3DEF GDP 18.2648
385 2QN6 GDP 18.2796
386 2B4B COA 18.7134
387 5KDO GDP 19.1176
388 1GOT GDP 19.1176
389 2WJH FLC 19.2771
390 2WJH GDP 19.2771
391 1B0U ATP 20.0913
392 4PU6 ASP 20.6107
393 2PMP C5P 20.625
394 3A1S GDP 20.9302
395 4M9Q GNP 21.0046
396 3ZIA ADP 21.0145
397 3ZIA ATP 21.0145
398 1D2N ANP 21.3235
399 1FQJ ALF 21.4286
400 1FQJ GDP 21.4286
401 1MR3 G3D 21.547
402 4TL6 ANP 21.8487
403 1UPT GTP 22.2222
404 4PFO ADP 22.3744
405 1B7T ADP 22.4359
406 2FH5 GTP 22.7027
407 2A5F GTP 22.8571
408 1OFH ADP 22.9885
409 1RE0 GDP 23.1707
410 1S9D GDP 23.1707
411 1F6B GDP 23.2323
412 3T12 GDP ALF 23.2323
413 3T1O GDP 23.2323
414 2WIC GNP 23.2877
415 4R98 GNH 23.2877
416 1GP2 GDP 23.9437
417 6CRK GDP 23.9437
418 2X7I CIT 24.026
419 1J2J GTP 24.0964
420 1O3Y GTP 24.0964
421 1ZUI SKM 24.4048
422 1UJ2 ADP 25.1142
423 1UJ2 C5P 25.1142
424 1KK8 BEF ADP 25.1799
425 1M2O GNP 25.2632
426 3ZS9 ADP ALF 26.3158
427 1FZQ GDP 26.5193
428 2KIN ADP 27
429 5J6H NCA 27
430 5HR5 ADP 27.3973
431 2GJ8 ALF GDP 27.907
432 1YZG GDP 28.4916
433 2QTV GNP 28.7425
434 2WKQ GTP 28.7671
435 1LES GLC FRU 28.8462
436 1KSH GDP 29.0323
437 4BAS GNP 29.6482
438 2J0V GDP 29.717
439 2Y65 ADP 30
440 3REF GDP 30.4124
441 1ZJ6 G3D 30.4813
442 2OM2 GDP 30.5556
443 4B47 GDP 31.0502
444 4DID GDP 31.0881
445 4V0K GDP 31.3609
446 1GWN GTP 31.7073
447 2GCO GNP 31.8408
448 2GCN GDP 31.8408
449 1DS6 GDP 32.2917
450 1RYH GNP 32.5123
451 1I4D GDP 32.8125
452 5UPK GNP 32.973
453 1OW3 GDP 33.1606
454 1E96 GTP 33.3333
455 3SBD GNP 33.6898
456 1QHH ATP 33.913
457 2W2X GSP 34.0541
458 4D0N GDP 34.0541
459 1CXZ GSP 34.0659
460 1A4R GNH 34.555
461 1A4R GDP 34.555
462 5HPY GDP 34.5946
463 1G4U AF3 34.7826
464 1G4U GDP 34.7826
465 1MH1 GNP 34.9462
466 1GRN AF3 35.0785
467 1GRN GDP 35.0785
468 4ITR GDP 35.0785
469 2NGR GDP 35.0785
470 2NGR AF3 35.0785
471 5XC5 GTP 35.2273
472 1M7B GTP 35.3261
473 1KMQ GNP 35.3261
474 1NF3 GNP 35.3846
475 2FJU GSP 35.3933
476 1HE1 AF3 35.7955
477 1HE1 GDP 35.7955
478 1TX4 ALF GDP 36.1582
479 2D7D ADP 37.5
480 5IRC GDP 37.6344
481 5YT0 GDP 38.0952
482 3T5G GDP 38.1215
483 6BSX GDP 38.764
484 6BSX E7S 38.764
485 1ZD9 GDP 39.3617
486 1R4A GNP 39.3939
487 2ZEJ GDP 40.7609
488 1XXA ARG 41.0256
489 5OCG GNP 41.7989
490 5UQW GDP 41.7989
491 3BC1 GNP 42.0513
492 2F9L GDP 42.2111
493 2BCG GDP 42.233
494 2G77 GDP 42.4242
495 2G77 AF3 42.4242
496 1OIV GDP 42.9319
497 5TB5 GDP 43.2432
498 5TAR GDP 43.2432
499 1OIX GDP 43.4555
500 2CJW GDP 43.75
501 1VG8 GNP 43.9614
502 1VG0 GDP 43.9614
503 4U5X GNP 44.9438
504 3RWO GDP 45.9459
505 1Z06 GNP 46.0317
506 6FA4 GNP 46.2428
507 2A9K GDP 46.5241
508 3Q85 GNP 46.7456
509 5O2T GSP 46.7456
510 3Q72 GNP 46.988
511 1YZN GNP 47.027
512 4C4P GNP 47.3988
513 5WLB GNP 47.5904
514 2C5L GTP 47.9769
515 2UZI GTP 48.1928
516 1CLU DBG 48.1928
517 1Z0J GTP 48.2353
518 2HV8 GTP 48.2558
519 2HT6 GDP 48.2759
520 6BVL GNP 48.503
521 6D59 GNP 48.503
522 6BVI GNP 48.503
523 6BVM GNP 48.503
524 6D5L GNP 48.503
525 6D55 GNP 48.503
526 6D56 GNP 48.503
527 6D5H GNP 48.503
528 6D5J GNP 48.503
529 6D5M GNP 48.503
530 6D5V GNP 48.503
531 6BVJ GNP 48.503
532 6D5E GNP 48.503
533 6BVK GNP 48.503
534 6D5G GNP 48.503
535 1LFD GNP 48.503
536 4K81 GTP 48.538
537 2A5J GDP 48.6911
538 1NVV GNP 48.7952
539 3KUD GDP 48.7952
540 1WQ1 GDP 48.7952
541 1WQ1 AF3 48.7952
542 1KY3 GDP 48.9011
543 2D7C GTP 49.1018
544 1YVD GNP 49.1124
545 1VG1 GDP 49.1892
546 1VG9 GDP 49.1892
547 3DDC GNP 49.3976
548 1G16 GDP 49.4118
549 5O74 GDP 49.4444
550 2FFQ GSP 49.7076
551 1Z0F GDP 49.7207
552 3QBT GNP 50
Pocket No.: 2; Query (leader) PDB : 3WYF; Ligand: GTP; Similar sites found with APoc: 43
This union binding pocket(no: 2) in the query (biounit: 3wyf.bio2) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 1GPM CIT 3.78151
2 3F81 STT 3.82514
3 2V2G BEZ 4.29185
4 1H5S TMP 4.77816
5 5F7J ADE 5.04202
6 1Q19 SSC 5.04202
7 6H45 QEI 5.10204
8 1UYY BGC BGC 5.34351
9 1ZQ9 SAM 5.46218
10 3QDK QDK 5.47945
11 1SZ2 BGC 5.93607
12 1QF9 C5P 6.18557
13 1QF9 ADP 6.18557
14 1QF9 ALF 6.18557
15 4IP7 FBP 6.30252
16 5XLS URA 6.30252
17 5NM7 GLY 6.39269
18 3MB5 SAM 6.39269
19 2HXW FLC 6.75105
20 1FDJ 13P 7.16253
21 2YIP YIO 7.24638
22 1R18 SAH 7.48899
23 5BSH PRO 7.76256
24 2JBH 5GP 8
25 5DG2 GAL GLC 8.14815
26 1V6A TRE 8.21918
27 3AI8 HNQ 8.98438
28 1YBH P22 9.15254
29 4TQK NAG 9.2437
30 3F6R FMN 10.1351
31 1TUK PGM 10.4478
32 4U60 SIA 10.5023
33 6ACS CIT 10.5023
34 3QVV A3P 10.5042
35 3TW1 AHN 10.9705
36 1M26 GAL A2G 11.2782
37 1A78 TDG 11.9403
38 2ZJ5 ADP 12.3288
39 5ODQ 9SB 12.3746
40 2WZF BGC 13.8655
41 1QD0 RR6 14.0625
42 3LN9 FLC 15.8273
43 2GMP NAG MAN 28.3105
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