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Receptor
PDB id Resolution Class Description Source Keywords
3WY9 2.3 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF A COMPLEX OF THE ARCHAEAL RIBOSOMAL STA AP1 AND THE GDP-BOUND ARCHAEAL ELONGATION FACTOR AEF1ALPHA PYROCOCCUS HORIKOSHII OT3 MULTI-DOMAIN GTPASE AMINOACYL-TRNA DELIVERY GTP AMINOACYSTALK PROTEIN TRANSLATION-RIBOSOMAL PROTEIN COMPLEX
Ref.: MOLECULAR INSIGHTS INTO THE INTERACTION OF THE RIBO STALK PROTEIN WITH ELONGATION FACTOR 1 ALPHA NUCLEIC ACIDS RES. 2014
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:500;
B:500;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3WY9 2.3 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF A COMPLEX OF THE ARCHAEAL RIBOSOMAL STA AP1 AND THE GDP-BOUND ARCHAEAL ELONGATION FACTOR AEF1ALPHA PYROCOCCUS HORIKOSHII OT3 MULTI-DOMAIN GTPASE AMINOACYL-TRNA DELIVERY GTP AMINOACYSTALK PROTEIN TRANSLATION-RIBOSOMAL PROTEIN COMPLEX
Ref.: MOLECULAR INSIGHTS INTO THE INTERACTION OF THE RIBO STALK PROTEIN WITH ELONGATION FACTOR 1 ALPHA NUCLEIC ACIDS RES. 2014
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3WY9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3WY9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 3WY9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3WY9; Ligand: GDP; Similar sites found with APoc: 594
This union binding pocket(no: 1) in the query (biounit: 3wy9.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1Z0A GDP None
2 1BO4 COA None
3 4HSE ADP 1.25945
4 2DPY ADP 1.38249
5 3CV2 OXL 1.38249
6 1SVK ALF GDP 1.41643
7 3UIE ANP 1.5
8 1Y3A GDP 1.51976
9 4LIK CIT 1.53061
10 2OM2 GDP 1.53846
11 2A5J GDP 1.57068
12 1BH2 GSP 1.5873
13 4IEE AGS 1.63265
14 2Z5F A3P 1.67785
15 1VHT BA3 1.83486
16 3RC3 ANP 1.84332
17 1VG8 GNP 1.93237
18 4IDN GNP 1.96937
19 5AHM IMP 2
20 6B8B ADP 2.00803
21 1XKV ATP 2.07373
22 1VG1 GDP 2.16216
23 2ZFI ADP 2.18579
24 1D2N ANP 2.20588
25 3E7O 35F 2.22222
26 1DAK DPU 2.23214
27 1DAK ADP 2.23214
28 3DEF GDP 2.29008
29 2FAH GDP 2.30415
30 3VM7 GLC 2.30415
31 1QF5 GDP 2.32019
32 1QF5 RPL 2.32019
33 2HV8 GTP 2.32558
34 2BEK ATP 2.33463
35 2ZE7 AMP 2.37154
36 2ZE7 DST 2.37154
37 3QVV A3P 2.37288
38 3QVV 3QV 2.37288
39 2ZPT A3P 2.37288
40 2D7C GTP 2.39521
41 2F3R G5P 2.41546
42 1VKJ A3P 2.45614
43 3B5J 12D 2.46914
44 5HGZ ACO 2.46914
45 3FYH ADP 2.48447
46 2RCN GDP 2.51397
47 4R43 GDP 2.53456
48 5U32 GDP 2.54237
49 1K6M AGS 2.5463
50 1T5C ADP 2.5788
51 2AWN ADP 2.62467
52 1VM6 NAD 2.63158
53 1AQU A3P 2.6936
54 3TK1 GDP 2.72727
55 1Q19 APC 2.76498
56 4TMK T5A 2.8169
57 3DKP ADP 2.85714
58 1MAR NAP 2.85714
59 1MAR ZST 2.85714
60 3QXC ATP 2.89256
61 3BOS CDP 2.89256
62 5Z2M GTP 2.89855
63 4QM7 GTP 2.92398
64 2JAQ DCP 2.92683
65 1G16 GDP 2.94118
66 3EF0 ALF 2.95699
67 5HR5 ADP 2.99539
68 2BIF SIN 2.99539
69 2BIF ANP 2.99539
70 1U0J ADP 2.99625
71 5HH0 COA 3
72 4H6U ACO 3
73 2F9L GDP 3.01508
74 6B4K ANP 3.02326
75 2GDJ ANP 3.0303
76 1EP2 ORO 3.06513
77 3H86 AP5 3.125
78 5C9P FUC 3.14961
79 1ZJ6 G3D 3.20856
80 5CK5 GDP 3.22581
81 5AK0 8V1 3.22581
82 3VX3 ADP 3.22581
83 2XAU ADP 3.22581
84 1I0B PEL 3.31325
85 1E2K TMC 3.32326
86 1YZG GDP 3.35196
87 2O0J ADP 3.37662
88 1CR1 TTP 3.37838
89 1GWN GTP 3.41463
90 5MEX SZZ 3.41615
91 5MEX PAP 3.41615
92 2IS6 ADP 3.45622
93 5Y6N ADP 3.45622
94 2VTD LKM 3.45622
95 2W58 ADP 3.46535
96 3FWY ADP 3.50318
97 4GOX A3P 3.51438
98 1FL2 FAD 3.54839
99 4TL6 ANP 3.55731
100 3LN9 FLC 3.59712
101 1Z4O GL1 3.61991
102 3MD0 GDP 3.66197
103 1OIX GDP 3.66492
104 1OIV GDP 3.66492
105 1IWE IMP 3.68664
106 4OI4 ATP 3.68664
107 5KUT GDP 3.7037
108 1ION ADP 3.7037
109 4LPS GDP 3.71901
110 1JI0 ATP 3.75
111 2J0V GDP 3.77358
112 4KFU ACP 3.77358
113 3DC4 ADP 3.77907
114 1M7G ADX 3.79147
115 1M7G AV2 3.79147
116 1M7G ADP 3.79147
117 1G3Q ADP 3.79747
118 1M7B GTP 3.80435
119 2YOH WMJ 3.80952
120 1YRB GDP 3.81679
121 5EXT ADP 3.84615
122 4LC1 GDP 3.91705
123 5I34 GDP 3.91705
124 1FEC FAD 3.91705
125 6F7L FAD 3.91705
126 1RJ9 GCP 3.94737
127 1NJF AGS 4
128 1NJF ADP 4
129 4ZNL BEF ADP 4.0146
130 1LVG ADP 4.0404
131 2IXE ATP 4.05904
132 3GJ4 GDP 4.0724
133 3GJ5 GDP 4.0724
134 3DZD ADP 4.07609
135 3QKT ANP 4.12979
136 1Z2A GDP 4.14747
137 2ZPA ADP 4.14747
138 1A4R GNH 4.18848
139 1A4R GDP 4.18848
140 4NE2 SH2 4.19162
141 4NE2 ADP 4.19162
142 2QZ4 ADP 4.19847
143 2IYL GDP 4.22535
144 2XTZ GSP 4.23729
145 2PL3 ADP 4.23729
146 1PUJ GNP 4.25532
147 4Q1A UDP 4.28571
148 4Q1A 2XZ 4.28571
149 3RWO GDP 4.32432
150 1F2U ATP 4.37788
151 1OYY AGS 4.37788
152 3MGB PAP 4.38871
153 1Z0F GDP 4.46927
154 4U5X GNP 4.49438
155 5XKT GNP 4.5
156 2V5K OXM 4.52962
157 2G77 GDP 4.54545
158 1SQ5 ADP 4.54545
159 3P4X ADP 4.60048
160 4DID GDP 4.60526
161 4IOK ADP 4.60829
162 4IOK XPO 4.60829
163 1JJ7 ADP 4.61538
164 6FA4 GNP 4.62428
165 1FNN ADP 4.62725
166 4TTQ ATP 4.65116
167 1R2Q GNP 4.70588
168 1Z06 GNP 4.7619
169 3MJH GTP 4.7619
170 5OCG GNP 4.7619
171 5UQW GDP 4.7619
172 1GOJ ADP 4.78873
173 1P72 ADP 4.79042
174 1O3Y GTP 4.81928
175 1OS1 ATP 4.83871
176 1OS1 PYR 4.83871
177 5TAR GDP 4.86486
178 5TB5 GDP 4.86486
179 1RE0 GDP 4.87805
180 5NM7 GLY 4.88722
181 1F9V ADP 4.89914
182 1WF3 GNP 4.98339
183 2NCD ADP 5
184 3A4M ADP 5
185 1BOB ACO 5
186 2OG2 MLI 5.01393
187 5BYK A3P 5.01931
188 5BYK OAQ 5.01931
189 3BFX A3P 5.06757
190 2JLR ANP 5.06912
191 3ZS9 ADP ALF 5.08475
192 2WOJ ADP ALF 5.08475
193 1QF9 C5P 5.15464
194 1QF9 ALF 5.15464
195 1QF9 ADP 5.15464
196 4XVU ATP 5.21739
197 5KSP GDP 5.26316
198 4QOS ADP 5.28302
199 5KSZ GCP 5.29954
200 5O2T GSP 5.32544
201 1Q20 A3P 5.35117
202 1Q20 PLO 5.35117
203 1UKZ ADP 5.41872
204 3COB ADP 5.42005
205 1G6H ADP 5.44747
206 4AF0 IMP 5.52995
207 3T1O GDP 5.55556
208 2XTN GTP 5.55556
209 5L3W GDP 5.55556
210 5GVR LMR 5.55556
211 2QX0 PH2 5.66038
212 1X8J A3P 5.69801
213 2GWH A3P 5.7047
214 3T12 GDP ALF 5.88235
215 5TIV A3P 5.92885
216 3B9Q MLI 5.96026
217 2PZ8 APC 5.99078
218 5BW4 SAM 5.99251
219 2QG6 NMN 6.03015
220 2VBQ BSJ 6.06061
221 5L3R GCP 6.14334
222 3REF GDP 6.18557
223 5ZXD ATP 6.22711
224 4H1V GNP 6.23306
225 2A5F GTP 6.28571
226 4BFW ZVW 6.28931
227 1H65 GDP 6.2963
228 1TU3 GNP 6.32911
229 2XT3 ADP 6.39535
230 1CLU DBG 6.45161
231 6D5E GNP 6.45161
232 6D5G GNP 6.45161
233 6D5J GNP 6.45161
234 6BVL GNP 6.45161
235 6D56 GNP 6.45161
236 6D5L GNP 6.45161
237 6BVJ GNP 6.45161
238 6D59 GNP 6.45161
239 6D5H GNP 6.45161
240 6D55 GNP 6.45161
241 6BVI GNP 6.45161
242 6BVK GNP 6.45161
243 6D5V GNP 6.45161
244 2UZI GTP 6.45161
245 1NVV GNP 6.45161
246 3DDC GNP 6.45161
247 6D5M GNP 6.45161
248 6BVM GNP 6.45161
249 4K81 GTP 6.45161
250 4PX9 ADP 6.50685
251 1U8Z GDP 6.54762
252 3T5G GDP 6.62983
253 1W4R TTP 6.68203
254 2ORV 4TA 6.68203
255 6BSX GDP 6.74157
256 6BSX E7S 6.74157
257 2CJW GDP 6.77083
258 3GJ3 GDP 6.78733
259 3GJ0 GDP 6.78733
260 2J5V PCA 6.81199
261 1KO8 6PG 6.85714
262 3W5J GDP 6.86275
263 1SVM ATP 6.89655
264 4R3L COA 6.93642
265 3CH5 GDP 6.94444
266 5BXQ GDP 6.94444
267 1IBR GNP 6.94444
268 1NY5 ADP 6.97674
269 1XMV ADP 7.02247
270 4QRH 0O2 7.14286
271 2A9K GDP 7.17489
272 3Q72 GNP 7.22892
273 4Z0G 5GP 7.26392
274 4ITR GDP 7.27848
275 1T8U A3P 7.35294
276 1T8U UAP SGN IDS SGN 7.35294
277 5MZN ADP 7.37327
278 5XC5 GTP 7.38636
279 3KUD GDP 7.40741
280 2CDN ADP 7.46269
281 2HT6 GDP 7.47126
282 4IXH IMP 7.47922
283 5CUQ NSC 7.49064
284 3BD9 A3P 7.5
285 1KSH GDP 7.52688
286 3GJ8 GDP 7.6087
287 1L2T ATP 7.65957
288 3RAB GNP 7.69231
289 2HF9 GSP 7.9646
290 1ZD9 GDP 7.97872
291 5E5U MLI 8.0402
292 1LFD GNP 8.04598
293 3FVQ ATP 8.07799
294 3Q85 GNP 8.28402
295 4V0K GDP 8.28402
296 1X1R GDP 8.29493
297 5UPK GNP 8.33333
298 5UIV ADP 8.37004
299 2I4I AMP 8.39329
300 4WOP CTP 8.44444
301 2GJ8 ALF GDP 8.52535
302 1YQT ADP 8.52535
303 1FZQ GDP 8.75576
304 2FFQ GSP 8.77193
305 1YZQ GNP 8.82353
306 1ZC3 GNP 8.84956
307 2B8T THM 8.96861
308 2ODE ALF GDP 8.98618
309 4R2I ANP 9.04762
310 3QBT GNP 9.1954
311 3EC1 GDP 9.21409
312 4HAT GNP 9.21659
313 5DIF GNP 9.21659
314 5UWP GNP 9.21659
315 5UWW GNP 9.21659
316 5UWQ GNP 9.21659
317 5UWU GNP 9.21659
318 5UWI GNP 9.21659
319 6CIT GNP 9.21659
320 5UWJ GNP 9.21659
321 5UWR GNP 9.21659
322 5UWH GNP 9.21659
323 5DHF GNP 9.21659
324 5UWO GNP 9.21659
325 5DI9 GNP 9.21659
326 1JJV ATP 9.2233
327 4UXH T5A 9.23913
328 4KOT CE3 9.25926
329 4P4T GDP 9.375
330 4U00 ADP 9.375
331 3ZQ6 ADP ALF 9.375
332 2GKS ADP 9.375
333 1YTM ATP 9.375
334 3TBK ANP 9.375
335 2D2F ADP 9.375
336 1TLL FMN 9.375
337 1X6V ADP 9.447
338 1GUA GNP 9.58084
339 2VWT PYR 9.73783
340 4DPL NAP 9.7493
341 1OFH ADP 9.77011
342 3BER AMP 10.0402
343 3GJ7 GDP 10.2041
344 4X8O AP5 10.2804
345 2GCN GDP 10.4478
346 2GCO GNP 10.4478
347 1D5C GDP 10.4938
348 1P9B GDP 10.5991
349 4NU0 AP5 10.5991
350 5KDO GDP 10.8108
351 4XTR ATP 10.8108
352 4XTR ADP 10.8108
353 5HCN GCP 10.8295
354 1OE0 TTP 10.8696
355 5Z69 AGS 11.0215
356 4BAS GNP 11.0553
357 2OFW ADX 11.0577
358 5IRC GDP 11.2903
359 5HPY GDP 11.3514
360 4D0N GDP 11.3514
361 1AKY AP5 11.3636
362 1KMQ GNP 11.413
363 3FB4 AP5 11.5741
364 1MR3 G3D 11.6022
365 1S9D GDP 11.8227
366 3CX8 GSP 11.9816
367 3A1S GDP 11.9816
368 3ZFD ANP 11.9816
369 1S3G AP5 11.9816
370 3B7G ANP 12.1739
371 1UJ2 ADP 12.3016
372 1UJ2 C5P 12.3016
373 6CE2 SVR 12.3967
374 1ZIN AP5 12.4424
375 6G14 G4P 12.5
376 4D81 ADP 12.5
377 2RGX AP5 12.5
378 2GMV PEP 12.5
379 2GMV UN8 12.5
380 1NHX FTB 12.5
381 1NHX PEP 12.5
382 4HUT ATP 12.5
383 3JVH HHV 12.5683
384 1NRJ GTP 12.6728
385 3IUY AMP 12.7193
386 1CXZ GSP 12.7907
387 2PEZ GGZ 12.8492
388 2PEZ DAT 12.8492
389 1SVI GDP 13.1336
390 1KY3 GDP 13.1868
391 4HI0 GDP 13.5678
392 1Z0K GTP 14.4928
393 1NN5 2DT 14.8837
394 1NN5 ANP 14.8837
395 6DEF GCP 14.977
396 6CS8 F9Y 15.5116
397 1TAD GDP 15.625
398 1TAD ALF 15.625
399 1KAO GDP 15.625
400 1W0J ADP 15.625
401 2V7Q ATP 15.625
402 2VVG ADP 15.625
403 1W0J ADP BEF 15.625
404 2CK3 ADP 15.625
405 2V7Q ADP 15.625
406 2CK3 ANP 15.625
407 1KUV CA5 15.625
408 1CJW COT 15.625
409 4YRY FAD 15.625
410 3ZL8 ADP 15.625
411 1R4A GNP 15.6863
412 4C4P GNP 15.8879
413 5ZB0 ADP 16.1616
414 5ZB0 TYD 16.1616
415 4DCT GDP 16.3594
416 3PQC GDP 16.5899
417 4MKG AP5 16.5899
418 4MKF AP5 17.5115
419 1GXU 2HP 17.5824
420 5WLB GNP 17.6471
421 2ZFZ ARG 17.7215
422 2BME GNP 17.7419
423 1Z83 AP5 17.8571
424 6CRK GDP 18.3099
425 1GP2 GDP 18.3099
426 1UPT GTP 18.3333
427 4NON GDP 18.75
428 4HDO GNP 18.75
429 2NGR GDP 18.75
430 1NF3 GNP 18.75
431 1OW3 GDP 18.75
432 1TX4 ALF GDP 18.75
433 2Y65 ADP 18.75
434 1GRN GDP 18.75
435 2WHX ADP 18.75
436 4AG5 ADP 18.75
437 3RLF ANP 18.75
438 2ZR9 DTP 18.75
439 4YMU ATP 18.75
440 5LB3 ADP 18.75
441 2CHG ANP 18.75
442 4YS0 ADP 18.75
443 4KBF AMP 18.75
444 4GDX GLU 18.75
445 1G7S GDP 19.1244
446 1YZN GNP 20
447 2C5L GTP 21.875
448 2QTV GNP 21.875
449 2ZEJ GDP 21.875
450 1M2O GNP 21.875
451 4BQS K2Q 21.875
452 4BQS ADP 21.875
453 1W7J ADP BEF 21.875
454 2QQ0 ANP 21.875
455 2QQ0 THM 21.875
456 2QQ0 ADP 21.875
457 2QQ0 TMP 21.875
458 4ZG4 VO4 ADP 21.875
459 1FP6 ADP 21.875
460 4GBM A3P 21.875
461 5LLB 6YZ 21.875
462 1Z6T ADP 21.875
463 2D7D ADP 21.875
464 2FSH ANP 21.875
465 2JJK R15 21.875
466 2NYA MGD 21.875
467 2VOS ADP 21.875
468 5JCA FAD 21.875
469 3BC1 GNP 22.0339
470 1DAR GDP 22.5806
471 4R98 GNH 23.2472
472 1ZUI SKM 23.8095
473 1YVD GNP 24.8521
474 1MKY GDP 25
475 1VG9 GDP 25
476 1VG0 GDP 25
477 1F6B GDP 25
478 1S8F GDP 25
479 2BCG GDP 25
480 4NCN GTP 25
481 1IHU AF3 25
482 1IHU ADP 25
483 1BG2 ADP 25
484 3IIJ ADP 25
485 4CVN ADP 25
486 3H4S ADP 25
487 3E70 GDP 25
488 4FRZ ADP 25
489 3HU3 AGS 25
490 2C9O ADP 25
491 3NHB ADP 25
492 4WZ6 ATP 25
493 5TSH ADP 25
494 5X40 ACP 25
495 5TSH ANP 25
496 1B0U ATP 25
497 1W5T ANP 25
498 5BN3 ADP 25
499 1W5T ADP 25
500 1G6O ADP 25
501 1G3M A3P 25
502 1G3M PCQ 25
503 1NST A3P 25
504 1J99 AND 25
505 2GK6 ADP 25
506 1Z0J GTP 25.4237
507 2WJG GDP 26.0638
508 5UWT GNP 26.087
509 5FG3 GDP 26.4977
510 5UWS GNP 27.2727
511 1GOT GDP 28.125
512 1WA5 GTP 28.125
513 2WIC GNP 28.125
514 2KIN ADP 28.125
515 4WZA ACP 28.125
516 4WZA ADP 28.125
517 3BFV ADP 28.125
518 3ZIA ATP 28.125
519 1F5N GNP 28.125
520 3ZIA ADP 28.125
521 2B8W ALF 5GP 28.125
522 6C90 ADP 28.125
523 5WRJ A3P 28.125
524 5WRI A3P 28.125
525 4IHQ ADP 28.125
526 3KJI ADP 28.125
527 1XX6 ADP 28.125
528 3KTA AP5 28.125
529 2ZJ5 ADP 28.125
530 4ZDJ UTP 28.125
531 2WJH GDP 29.5181
532 2WJH FLC 29.5181
533 3AB3 GDP 31.25
534 6AU6 GDP 31.25
535 1CS4 GSP 31.25
536 1TQ4 GDP 31.25
537 1Z08 GNP 31.25
538 1WQ1 GDP 31.25
539 2QEN ADP 31.25
540 2Q2Y ADP 31.25
541 2Q2Y MKR 31.25
542 1KK8 BEF ADP 31.25
543 1XEX ATP 31.25
544 1V8K ANP 31.25
545 1OXV ANP 31.25
546 2CE7 ADP 31.25
547 1B7T ADP 31.25
548 5BQ5 ADP BEF 31.25
549 1P3D ANP 31.25
550 5I0H ADP BEF 31.25
551 1GQY ACP 31.25
552 1QHH ATP 31.25
553 4PSW COA 31.5789
554 3QF7 ANP 32
555 2FH5 GTP 32.243
556 1IN4 ADP 34.375
557 4PFO ADP 34.375
558 1LVK MNT BEF 34.375
559 3TMK T5A 34.375
560 4LJ9 ACP 34.375
561 4FCW ADP 34.375
562 2VB6 ADP BEF 34.375
563 4RD0 GDP 34.6988
564 2QN6 GDP 35.5072
565 5M04 GDP 37.5
566 1FQK GDP 37.5
567 1DS6 GDP 37.5
568 1MH1 GNP 37.5
569 2W2X GSP 37.5
570 1I4D GDP 37.5
571 2FJU GSP 37.5
572 1E96 GTP 37.5
573 2WKQ GTP 37.5
574 1G4U GDP 37.5
575 1FQJ GDP 37.5
576 1HE1 GDP 37.5
577 3SBD GNP 37.5
578 1R6B ADP 37.5
579 4PJ3 ANP 37.5
580 1RYH GNP 37.5
581 5YT0 GDP 38.0952
582 4B47 GDP 40.625
583 3M1I GTP 40.625
584 1EK0 GNP 40.625
585 4A4Z ANP 40.625
586 1KK1 GNP 41.2195
587 5L3S GNP 43.75
588 5L3V GDP 43.75
589 1G41 ADP 43.75
590 5N69 ADP 43.75
591 1XP8 AGS 43.75
592 5ZBR ANP 43.75
593 1J2J GTP 44.4444
594 5O74 GDP 46.875
595 1RRC ADP 50
Pocket No.: 2; Query (leader) PDB : 3WY9; Ligand: GDP; Similar sites found with APoc: 10
This union binding pocket(no: 2) in the query (biounit: 3wy9.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1W78 ADP 2.60664
2 1W78 PD8 2.60664
3 3F8D FAD 3.91705
4 2G77 AF3 4.54545
5 5EP2 AZU 5.07812
6 3ITJ CIT 5.6213
7 5AHO TLA 8.92857
8 6AIC AMP 13.0841
9 1PVN MZP 18.75
10 1QHG ATP 31.25
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