-->
Receptor
PDB id Resolution Class Description Source Keywords
3VX3 2.1 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF [NIFE] HYDROGENASE MATURATION PROTEIN H THERMOCOCCUS KODAKARENSIS KOD1 THERMOCOCCUS KODAKARENSIS MRP/MIND FAMILY ATPASE [NIFE] HYDROGENASE MATURATION ADP BPROTEIN
Ref.: IDENTIFICATION AND STRUCTURE OF A NOVEL ARCHAEAL HY [NIFE] HYDROGENASE MATURATION J.MOL.BIOL. V. 425 1627 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
EDO B:302;
B:304;
A:304;
B:303;
A:302;
A:303;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
ADP B:301;
A:301;
Valid;
Valid;
none;
none;
submit data
427.201 C10 H15 N5 O10 P2 c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3VX3 2.1 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF [NIFE] HYDROGENASE MATURATION PROTEIN H THERMOCOCCUS KODAKARENSIS KOD1 THERMOCOCCUS KODAKARENSIS MRP/MIND FAMILY ATPASE [NIFE] HYDROGENASE MATURATION ADP BPROTEIN
Ref.: IDENTIFICATION AND STRUCTURE OF A NOVEL ARCHAEAL HY [NIFE] HYDROGENASE MATURATION J.MOL.BIOL. V. 425 1627 2013
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 3VX3 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3VX3 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 173 families.
1 3VX3 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ADP; Similar ligands found: 452
No: Ligand ECFP6 Tc MDL keys Tc
1 ADP 1 1
2 HEJ 0.9 1
3 ATP 0.9 1
4 A2D 0.895522 0.971831
5 5FA 0.887324 1
6 AQP 0.887324 1
7 AP5 0.884058 0.971831
8 B4P 0.884058 0.971831
9 BA3 0.869565 0.971831
10 AN2 0.84507 0.985915
11 AT4 0.84507 0.958904
12 M33 0.833333 0.958333
13 ACQ 0.826667 0.972222
14 A 0.823529 0.971429
15 AMP 0.823529 0.971429
16 ACP 0.821918 0.972222
17 6YZ 0.818182 0.972222
18 APR 0.810811 0.971831
19 AR6 0.810811 0.971831
20 ANP 0.802632 0.972222
21 SAP 0.8 0.945946
22 AGS 0.8 0.945946
23 AD9 0.8 0.972222
24 ADX 0.783784 0.873418
25 CA0 0.783784 0.945205
26 TAT 0.779221 0.958904
27 T99 0.779221 0.958904
28 50T 0.773333 0.958333
29 ABM 0.763889 0.917808
30 APC 0.763158 0.958904
31 PRX 0.763158 0.893333
32 ATF 0.759494 0.958904
33 A22 0.753086 0.985915
34 AP2 0.743243 0.958904
35 A12 0.743243 0.958904
36 SRA 0.736111 0.918919
37 ADQ 0.73494 0.945205
38 25L 0.732558 0.985915
39 5AL 0.725 0.931507
40 2A5 0.717949 0.918919
41 A1R 0.714286 0.907895
42 AU1 0.714286 0.972222
43 A3R 0.714286 0.907895
44 ATR 0.708861 0.971429
45 ADP PO3 0.708861 0.943662
46 PAP 0.708861 0.985714
47 SRP 0.707317 0.906667
48 7D3 0.706667 0.905405
49 25A 0.702381 0.971831
50 9X8 0.697674 0.92
51 OAD 0.697674 0.945205
52 RBY 0.6875 0.932432
53 ADV 0.6875 0.932432
54 00A 0.686047 0.883117
55 OOB 0.682353 0.931507
56 5SV 0.682353 0.848101
57 8QN 0.682353 0.931507
58 3OD 0.681818 0.945205
59 BIS 0.681818 0.933333
60 ALF ADP 0.674699 0.87013
61 ADP ALF 0.674699 0.87013
62 AMO 0.674419 0.932432
63 4AD 0.674419 0.92
64 PAJ 0.674419 0.884615
65 GAP 0.670732 0.893333
66 MAP 0.670588 0.945946
67 AHX 0.666667 0.896104
68 VO4 ADP 0.666667 0.931507
69 DLL 0.666667 0.931507
70 ADP VO4 0.666667 0.931507
71 PTJ 0.662921 0.896104
72 3UK 0.659091 0.918919
73 SON 0.658228 0.932432
74 LMS 0.653333 0.82716
75 LAD 0.651685 0.860759
76 WAQ 0.651685 0.883117
77 B5V 0.651685 0.906667
78 PR8 0.651685 0.85
79 ITT 0.65 0.943662
80 7D4 0.65 0.905405
81 G5P 0.648936 0.921053
82 XYA 0.647059 0.84507
83 ADN 0.647059 0.84507
84 RAB 0.647059 0.84507
85 1ZZ 0.644444 0.839506
86 ME8 0.644444 0.839506
87 FYA 0.644444 0.905405
88 NB8 0.644444 0.896104
89 TXA 0.644444 0.932432
90 6AD 0.642857 0.909091
91 ADP BMA 0.640449 0.918919
92 G3A 0.638298 0.921053
93 DAL AMP 0.632184 0.905405
94 AFH 0.631579 0.884615
95 9SN 0.630435 0.871795
96 9ZA 0.625 0.907895
97 DQV 0.625 0.958333
98 9ZD 0.625 0.907895
99 GTA 0.625 0.886076
100 YAP 0.623656 0.894737
101 B5M 0.623656 0.894737
102 FA5 0.623656 0.906667
103 B5Y 0.623656 0.894737
104 UP5 0.622449 0.92
105 HFD 0.619048 0.945946
106 XAH 0.617021 0.839506
107 AV2 0.616279 0.917808
108 AOC 0.615385 0.821918
109 48N 0.612245 0.896104
110 4UV 0.610526 0.894737
111 6V0 0.606061 0.896104
112 NAI 0.606061 0.907895
113 DND 0.606061 0.932432
114 NAX 0.606061 0.873418
115 NXX 0.606061 0.932432
116 TXD 0.606061 0.907895
117 5N5 0.605634 0.819444
118 5AS 0.604938 0.77907
119 A4P 0.60396 0.843373
120 DAT 0.60241 0.905405
121 A2R 0.602273 0.985915
122 TXE 0.6 0.907895
123 OMR 0.6 0.851852
124 4UU 0.597938 0.894737
125 GA7 0.597938 0.906667
126 A A 0.597826 0.944444
127 A4D 0.597222 0.819444
128 5CD 0.597222 0.805556
129 AP0 0.594059 0.896104
130 4TC 0.594059 0.896104
131 A3P 0.592593 0.971429
132 T5A 0.592233 0.841463
133 139 0.592233 0.873418
134 7D5 0.592105 0.878378
135 ATP A A A 0.589474 0.930556
136 LAQ 0.585859 0.839506
137 MYR AMP 0.585106 0.817073
138 F2R 0.580952 0.864198
139 YLP 0.58 0.819277
140 UPA 0.578431 0.907895
141 7DD 0.578313 0.985714
142 3AM 0.576923 0.929577
143 ADJ 0.576923 0.851852
144 COD 0.575472 0.811765
145 NAD 0.575472 0.931507
146 3AT 0.574713 0.971831
147 JB6 0.574468 0.883117
148 4UW 0.574257 0.860759
149 EP4 0.573333 0.753247
150 A2P 0.573171 0.957143
151 CNA 0.571429 0.932432
152 TYM 0.568627 0.906667
153 PPS 0.568182 0.873418
154 DTA 0.565789 0.786667
155 M2T 0.565789 0.734177
156 AR6 AR6 0.565657 0.917808
157 A3D 0.564815 0.918919
158 80F 0.564815 0.841463
159 3DH 0.564103 0.773333
160 G5A 0.563218 0.77907
161 YLB 0.563107 0.819277
162 YLC 0.563107 0.839506
163 AMP DBH 0.561224 0.893333
164 TYR AMP 0.561224 0.87013
165 MTA 0.558442 0.773333
166 DTP 0.556818 0.905405
167 AHZ 0.554455 0.817073
168 NA7 0.553191 0.958904
169 IOT 0.552381 0.831325
170 ZAS 0.55 0.766234
171 7MD 0.55 0.8625
172 ARG AMP 0.55 0.829268
173 IMO 0.548781 0.929577
174 YLA 0.54717 0.819277
175 NAE 0.544643 0.894737
176 TAD 0.544554 0.884615
177 A5A 0.544444 0.807229
178 2AM 0.544304 0.943662
179 TSB 0.543478 0.819277
180 6RE 0.54321 0.759494
181 AYB 0.542056 0.809524
182 NAQ 0.539823 0.871795
183 V3L 0.539326 0.971831
184 SSA 0.538462 0.8
185 AF3 ADP 3PG 0.538462 0.8375
186 ZID 0.535088 0.918919
187 LPA AMP 0.533981 0.817073
188 52H 0.532609 0.77907
189 VMS 0.532609 0.788235
190 54H 0.532609 0.788235
191 BTX 0.53211 0.841463
192 A3N 0.53012 0.786667
193 J7C 0.53012 0.769231
194 5X8 0.528736 0.763158
195 BT5 0.527273 0.831325
196 8X1 0.526882 0.752809
197 5CA 0.526882 0.8
198 53H 0.526882 0.77907
199 ARU 0.526316 0.860759
200 EAD 0.525862 0.873418
201 RGT 0.525253 0.958904
202 OVE 0.52439 0.905405
203 S4M 0.52381 0.666667
204 7DT 0.522727 0.985714
205 GDP 0.522222 0.92
206 DDS 0.522222 0.878378
207 AVV 0.521277 0.896104
208 NDE 0.521008 0.932432
209 7MC 0.518868 0.841463
210 DSH 0.518072 0.725
211 MAO 0.517647 0.759036
212 NSS 0.515789 0.8
213 DSZ 0.515789 0.8
214 LSS 0.515789 0.761364
215 P5A 0.515464 0.744444
216 DZD 0.513514 0.884615
217 NVA LMS 0.510417 0.752809
218 9K8 0.510204 0.714286
219 12D 0.509615 0.785714
220 M24 0.508772 0.85
221 YLY 0.508772 0.809524
222 P1H 0.508333 0.851852
223 5AD 0.506849 0.746479
224 GJV 0.505882 0.75
225 LEU LMS 0.505155 0.752809
226 AMP NAD 0.504505 0.905405
227 4TA 0.504505 0.807229
228 G A A A 0.504505 0.871795
229 NAJ PZO 0.504425 0.848101
230 GSU 0.5 0.77907
231 128 0.5 0.776471
232 KAA 0.5 0.752809
233 71V 0.5 0.907895
234 A3G 0.5 0.8
235 NDC 0.5 0.871795
236 7D7 0.5 0.743243
237 N0B 0.495726 0.819277
238 NJP 0.495495 0.945946
239 ODP 0.495495 0.909091
240 2SA 0.494624 0.932432
241 6C6 0.494505 0.881579
242 SFG 0.494382 0.75
243 0WD 0.491071 0.921053
244 YSA 0.490196 0.77907
245 PO4 PO4 A A A A PO4 0.489796 0.902778
246 SAM 0.48913 0.690476
247 6IA 0.48913 0.8375
248 A7D 0.488636 0.776316
249 6FA 0.488 0.841463
250 FB0 0.487805 0.804598
251 NAJ PYZ 0.487179 0.807229
252 A5D 0.483516 0.786667
253 IDP 0.483516 0.918919
254 SA8 0.483516 0.707317
255 PGS 0.483146 0.883117
256 MHZ 0.483146 0.697674
257 DA 0.482353 0.878378
258 D5M 0.482353 0.878378
259 NEC 0.482353 0.746667
260 NIA 0.481928 0.822785
261 Y3J 0.480519 0.726027
262 8PZ 0.480392 0.8
263 FAD 0.480315 0.851852
264 FAS 0.480315 0.851852
265 FDA 0.48 0.833333
266 N6P 0.479592 0.915493
267 GGZ 0.479167 0.825
268 U A 0.478261 0.907895
269 SAH 0.478261 0.74359
270 SAI 0.478261 0.734177
271 A G 0.477876 0.883117
272 NPW 0.477477 0.886076
273 NDP 0.477477 0.921053
274 AAM 0.476744 0.971429
275 C2R 0.47561 0.90411
276 AMZ 0.47561 0.916667
277 A A A 0.474747 0.905405
278 GTP 0.473684 0.92
279 U A G G 0.473684 0.883117
280 SMM 0.473684 0.686047
281 NZQ 0.473214 0.909091
282 TXP 0.473214 0.921053
283 A3S 0.47191 0.810811
284 SFD 0.46875 0.734043
285 AIR 0.468354 0.901408
286 AAT 0.468085 0.707317
287 EEM 0.468085 0.690476
288 J7V 0.466667 0.833333
289 Z5A 0.466667 0.77907
290 7C5 0.466667 0.818182
291 62F 0.465649 0.8625
292 HDV 0.463158 0.893333
293 FAY 0.462121 0.8625
294 A3T 0.461538 0.821918
295 ETB 0.461538 0.833333
296 DCA 0.461538 0.823529
297 A6D 0.46 0.722892
298 A U 0.459459 0.87013
299 GEK 0.459184 0.7375
300 6K6 0.459184 0.930556
301 RFL 0.458647 0.821429
302 NAP 0.458333 0.945205
303 S7M 0.458333 0.690476
304 4YB 0.457944 0.761364
305 WSA 0.454545 0.788235
306 TAP 0.454545 0.907895
307 FNK 0.454545 0.804598
308 COA 0.453782 0.823529
309 0T1 0.453782 0.823529
310 101 0.453488 0.878378
311 XNP 0.452174 0.873418
312 NA0 0.45082 0.932432
313 7RP 0.448276 0.928571
314 GP3 0.446809 0.921053
315 TM1 0.446602 0.77381
316 APU 0.446429 0.894737
317 PUA 0.445378 0.884615
318 V1N 0.443396 0.917808
319 7RA 0.443182 0.957747
320 COS 0.442623 0.804598
321 AMX 0.442623 0.833333
322 30N 0.442623 0.752688
323 CAO 0.442623 0.795455
324 QQY 0.44186 0.815789
325 ACK 0.44186 0.861111
326 649 0.441441 0.744444
327 0UM 0.44 0.698795
328 NHD 0.439655 0.905405
329 CMX 0.439024 0.823529
330 SCO 0.439024 0.823529
331 GCP 0.438776 0.896104
332 8BR 0.438202 0.906667
333 GNH 0.4375 0.907895
334 8Q2 0.4375 0.772727
335 3AD 0.4375 0.805556
336 NVA 2AD 0.43617 0.759494
337 62X 0.435644 0.666667
338 FCX 0.435484 0.795455
339 ACO 0.435484 0.795455
340 FAM 0.435484 0.804598
341 9JJ 0.434783 0.8625
342 GNP 0.434343 0.896104
343 9GM 0.434343 0.896104
344 NMX 0.433071 0.76087
345 MGP 0.43299 0.884615
346 26A 0.432099 0.763158
347 HAX 0.432 0.804598
348 K15 0.431373 0.682353
349 DG1 0.430894 0.921053
350 1DG 0.430894 0.921053
351 QQX 0.430233 0.805195
352 2VA 0.430108 0.8
353 S8M 0.43 0.759494
354 2MC 0.429688 0.769231
355 6G0 0.428571 0.884615
356 P5F 0.428571 0.823529
357 FYN 0.428571 0.823529
358 3KK 0.428571 0.804598
359 A C A C 0.428571 0.848101
360 7L1 0.427419 0.795455
361 FAI 0.426966 0.916667
362 RMB 0.426966 0.873239
363 AS 0.426966 0.833333
364 1RB 0.425287 0.885714
365 CA6 0.425197 0.729167
366 SOP 0.425197 0.804598
367 OXK 0.425197 0.804598
368 MCD 0.425197 0.804598
369 COK 0.425197 0.804598
370 G1R 0.424242 0.907895
371 SXZ 0.423077 0.710843
372 CC5 0.423077 0.816901
373 F2N 0.422535 0.813953
374 EO7 0.422222 0.788235
375 ANZ 0.422018 0.8
376 1VU 0.421875 0.795455
377 CMC 0.421875 0.804598
378 CO6 0.421875 0.804598
379 ZDA 0.421053 0.864865
380 GKE 0.420561 0.884615
381 GDC 0.420561 0.884615
382 GDD 0.420561 0.884615
383 NFD 0.420168 0.883117
384 GSP 0.42 0.873418
385 D3Y 0.42 0.789474
386 MC4 0.419847 0.76087
387 3D1 0.419753 0.773333
388 3L1 0.419753 0.773333
389 FA9 0.41958 0.864198
390 5GP 0.419355 0.906667
391 G 0.419355 0.906667
392 KB1 0.419048 0.698795
393 CAJ 0.418605 0.804598
394 SCD 0.418605 0.823529
395 CMP 0.417582 0.901408
396 2BA 0.417582 0.915493
397 SO8 0.416667 0.789474
398 VRT 0.416667 0.769231
399 N01 0.416667 0.905405
400 IVC 0.415385 0.813953
401 1HE 0.415385 0.786517
402 A1S 0.415385 0.804598
403 BCO 0.415385 0.804598
404 3HC 0.415385 0.813953
405 MLC 0.415385 0.804598
406 NMN AMP PO4 0.415254 0.87013
407 2FA 0.414634 0.813333
408 MGO 0.414141 0.860759
409 3NZ 0.413462 0.782051
410 COO 0.412214 0.804598
411 MCA 0.412214 0.795455
412 YE1 0.412214 0.813953
413 CAA 0.412214 0.813953
414 GAV 0.411765 0.884615
415 PRT 0.411215 0.931507
416 JLN 0.411111 0.890411
417 P2P 0.411111 0.902778
418 ZZB 0.410256 0.77381
419 SP1 0.409091 0.842105
420 RP1 0.409091 0.842105
421 2CP 0.409091 0.795455
422 SCA 0.409091 0.804598
423 103 0.409091 0.837838
424 PAX 0.408 0.829268
425 FAD NBT 0.407143 0.75
426 COW 0.406015 0.795455
427 3CP 0.406015 0.804598
428 IRC 0.406015 0.813953
429 BYC 0.406015 0.804598
430 CA8 0.406015 0.729167
431 1GZ 0.406015 0.795455
432 COF 0.406015 0.786517
433 HGG 0.406015 0.804598
434 2KQ 0.406015 0.786517
435 G2P 0.405941 0.884615
436 SLU 0.404959 0.770115
437 U A C C 0.404959 0.858974
438 RBZ 0.404494 0.849315
439 1CZ 0.404412 0.795455
440 FAQ 0.402985 0.804598
441 BCA 0.402985 0.795455
442 4CA 0.402985 0.795455
443 MTP 0.402439 0.730769
444 8OD 0.402062 0.945205
445 CO7 0.401515 0.804598
446 GRA 0.4 0.804598
447 G2R 0.4 0.884615
448 ENQ 0.4 0.916667
449 CNV FAD 0.4 0.8
450 GMV 0.4 0.896104
451 HXC 0.4 0.786517
452 HF7 0.4 0.893333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3VX3; Ligand: ADP; Similar sites found with APoc: 651
This union binding pocket(no: 1) in the query (biounit: 3vx3.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 2ALG DAO None
2 2ZEJ GDP None
3 3QXC ATP None
4 1BWO LPC None
5 1S3G AP5 1.38249
6 2W58 ADP 1.48515
7 4XGU ADP 1.6129
8 5HR5 ADP 1.6129
9 3AI8 HNQ 1.6129
10 1YZG GDP 1.67598
11 5U32 GDP 1.69492
12 5XKT GNP 2
13 3CPJ GDP 2.01613
14 4CSD MFU 2.01613
15 1GXU 2HP 2.1978
16 2Y8E GNP 2.23464
17 1VHT BA3 2.29358
18 1UPT GTP 2.33918
19 2FFQ GSP 2.33918
20 1YZQ GNP 2.35294
21 1GOJ ADP 2.41935
22 3DC4 ADP 2.41935
23 2CE7 ADP 2.41935
24 4D81 ADP 2.41935
25 2QZ4 ADP 2.41935
26 4B47 GDP 2.41935
27 3T34 GDP 2.41935
28 5X40 ACP 2.41935
29 2JJK R15 2.41935
30 1ZTH ADP 2.41935
31 3KDU NKS 2.41935
32 4C2W ANP 2.41935
33 3ZRM ZRM 2.41935
34 4ITH RCM 2.41935
35 2KIN ADP 2.52101
36 5GVR LMR 2.5641
37 3GAC ENO 2.5641
38 1QF9 ALF 2.57732
39 1QF9 ADP 2.57732
40 1QF9 C5P 2.57732
41 5KSP GDP 2.63158
42 4P7U 1PS 2.67857
43 4DKX GDP 2.77778
44 3TMK T5A 2.77778
45 2ZFI ADP 2.82258
46 5AK0 8V1 2.82258
47 4NE2 ADP 2.82258
48 4NE2 SH2 2.82258
49 4UX9 ANP 2.82258
50 4GBM A3P 2.82258
51 6CAM BGC 2.82258
52 3GC0 AMP 2.82258
53 5EXT ADP 2.82258
54 1F9V ADP 2.82258
55 3PN1 IVH 2.82258
56 2A2C NG1 2.82258
57 2A2C ADP 2.82258
58 6F9G PUT 2.82258
59 5ZB0 ADP 3.0303
60 5ZB0 TYD 3.0303
61 2A5J GDP 3.14136
62 5CK5 GDP 3.22581
63 3CNL GNP 3.22581
64 2WIC GNP 3.22581
65 2Y65 ADP 3.22581
66 3U6B GDP 3.22581
67 1BG2 ADP 3.22581
68 3WYA GDP 3.22581
69 5JBQ GDP 3.22581
70 1D8T GDP 3.22581
71 3WY9 GDP 3.22581
72 3U6K GDP 3.22581
73 4IHQ ADP 3.22581
74 1SQ5 ADP 3.22581
75 5H7J GCP 3.22581
76 5BN3 ADP 3.22581
77 3AB3 GDP 3.22581
78 2BVN GNP 3.22581
79 4G5G GDP 3.22581
80 1ZCB GDP 3.22581
81 2ZPT A3P 3.22581
82 3L6C MLI 3.22581
83 2ZTS ADP 3.22581
84 3QKT ANP 3.22581
85 4ZKD GDP 3.22581
86 1IWE IMP 3.22581
87 3M31 FAD 3.22581
88 5HVJ ANP 3.22581
89 3ITJ CIT 3.22581
90 4PJ3 ANP 3.22581
91 5A1S FLC 3.22581
92 3HQ9 OXL 3.22581
93 2Z5F A3P 3.22581
94 2CBZ ATP 3.37553
95 1Z0A GDP 3.44828
96 1F6B GDP 3.53535
97 2HF9 GSP 3.53982
98 3GJ3 GDP 3.61991
99 3FKQ ATP 3.62903
100 4J0Q GDP 3.62903
101 1T5C ADP 3.62903
102 5W7Q GDP 3.62903
103 4LYA ATP 3.62903
104 4DDY DN6 3.62903
105 5W75 GDP 3.62903
106 3A1S GDP 3.62903
107 1PUJ GNP 3.62903
108 1V8K ANP 3.62903
109 1FNN ADP 3.62903
110 6C90 ADP 3.62903
111 2C78 GNP 3.62903
112 2C77 GNP 3.62903
113 4PFO ADP 3.62903
114 1SVM ATP 3.62903
115 2VB6 ADP BEF 3.62903
116 3FIU POP 3.62903
117 1NST A3P 3.62903
118 2NCD ADP 3.62903
119 1NAA ABL 3.62903
120 4NON GDP 3.62903
121 1L2T ATP 3.82979
122 1VG8 GNP 3.86473
123 2IL4 COA 3.8835
124 1Z0F GDP 3.91061
125 4Q1A UDP 3.92857
126 4Q1A 2XZ 3.92857
127 1S8F GDP 3.9548
128 2GCO GNP 3.9801
129 2GCN GDP 3.9801
130 2XT3 ADP 4.03226
131 1VG0 GDP 4.03226
132 5VGR GDP 4.03226
133 1DAR GDP 4.03226
134 5IRN ADP 4.03226
135 4TL6 ANP 4.03226
136 4RD0 GDP 4.03226
137 4IOK ADP 4.03226
138 4IOK XPO 4.03226
139 3RC3 ANP 4.03226
140 1D2N ANP 4.03226
141 4GID 0GH 4.03226
142 3B8I OXL 4.03226
143 2FNA ADP 4.03226
144 1LVG ADP 4.0404
145 3BOS CDP 4.13223
146 3NOJ PYR 4.20168
147 5KUT GDP 4.2328
148 1VG9 GDP 4.32432
149 1VG1 GDP 4.32432
150 4D0N GDP 4.32432
151 3RWO GDP 4.32432
152 5HPY GDP 4.32432
153 6BCB GSP 4.32432
154 4D0G GTP 4.34783
155 43CA NPO 4.42478
156 4R98 GNH 4.43548
157 3LRE ADP 4.43548
158 2RCN GDP 4.43548
159 1Z6T ADP 4.43548
160 4IDN GNP 4.43548
161 3WXM GTP 4.43548
162 4PZ6 GMP 4.43548
163 1T0S BML 4.43548
164 2Q2Y MKR 4.43548
165 2Q2Y ADP 4.43548
166 5LMK 6ZK 4.43548
167 2V2V V12 4.43548
168 4XOI GTP 4.44444
169 1DAK DPU 4.46429
170 1DAK ADP 4.46429
171 2CDN ADP 4.47761
172 3DKP ADP 4.4898
173 4XVU ATP 4.51977
174 4XTR ADP 4.51977
175 4XTR ATP 4.51977
176 1B0U ATP 4.58015
177 2HT6 GDP 4.5977
178 4NU0 AP5 4.60829
179 3FB4 AP5 4.62963
180 2J0V GDP 4.71698
181 1BO4 COA 4.7619
182 2OBM ADP 4.83871
183 1OIV GDP 4.83871
184 1Y3A GDP 4.83871
185 1BH2 GSP 4.83871
186 1MH1 GNP 4.83871
187 1E2K TMC 4.83871
188 3VMF GTP 4.83871
189 1OIX GDP 4.83871
190 4LJ9 ACP 4.83871
191 4FCW ADP 4.83871
192 3NHB ADP 4.83871
193 5VHC BEF ADP 4.83871
194 1W5T ADP 4.83871
195 1W5T ANP 4.83871
196 1JPA ANP 4.83871
197 3BD9 A3P 4.83871
198 1A99 PUT 4.83871
199 1SVK ALF GDP 4.83871
200 1Q20 A3P 4.83871
201 1Q20 PLO 4.83871
202 5G3Y ADP 4.86726
203 3AQ4 GDP 4.8913
204 5G41 AP5 4.93274
205 3B5J 12D 4.93827
206 1D5C GDP 4.93827
207 4P3Y GDP 4.94506
208 2ODE ALF GDP 4.96454
209 2EFE GNH 4.97238
210 4MKF AP5 5.06912
211 4MKG AP5 5.06912
212 2AWN ADP 5.24194
213 4DCT GDP 5.24194
214 3WYF GTP 5.24194
215 3M1I GTP 5.24194
216 3WYG GTP 5.24194
217 5LB3 ADP 5.24194
218 2WKQ GTP 5.24194
219 5ZBR ANP 5.24194
220 4HSE ADP 5.24194
221 5I0H ADP BEF 5.24194
222 3BER AMP 5.24194
223 5Y6N ADP 5.24194
224 3FVQ ATP 5.24194
225 4WZ6 ATP 5.24194
226 3RLF ANP 5.24194
227 1TU3 GNP 5.26316
228 1R2Q GNP 5.29412
229 2CHG ANP 5.30973
230 3Q85 GNP 5.32544
231 3MJH GTP 5.35714
232 1F2U ATP 5.40541
233 2J59 GTP 5.42169
234 1O3Y GTP 5.42169
235 1AKY AP5 5.45455
236 1RE0 GDP 5.4878
237 2PL3 ADP 5.50847
238 6F7X MFU 5.55556
239 4TTQ ATP 5.5814
240 6CRK GDP 5.64516
241 1IN4 ADP 5.64516
242 5HCN GCP 5.64516
243 2EW1 GNP 5.64516
244 2ZJ5 ADP 5.64516
245 4PC3 GDP 5.64516
246 3TBK ANP 5.64516
247 1R0X ATP 5.64516
248 4OHY ANP 5.64516
249 2C9O ADP 5.64516
250 3GJX GTP 5.64516
251 1Q19 SSC 5.64516
252 1VKJ A3P 5.64516
253 2XTZ GSP 5.64516
254 1S68 AMP 5.64516
255 5LTJ ADP 5.64516
256 1U0J ADP 5.64516
257 4IEE AGS 5.64516
258 5L2R MLA 5.64516
259 1RRC ADP 5.64784
260 3B7G ANP 5.65217
261 1XX6 ADP 5.75916
262 4YLG GDP 5.78035
263 1M2O GNP 5.78947
264 5Z2M GTP 5.7971
265 1JI0 ATP 5.83333
266 2A9K GDP 5.88235
267 1G16 GDP 5.88235
268 1RYH GNP 5.91133
269 2WJH FLC 6.0241
270 2WJH GDP 6.0241
271 3EZ2 ADP 6.04839
272 2WOJ ADP ALF 6.04839
273 3ZS9 ADP ALF 6.04839
274 1SKQ GDP 6.04839
275 1OXV ANP 6.04839
276 1VJY 460 6.04839
277 4B5W PYR 6.04839
278 4GJ3 0XP 6.04839
279 4JZ8 CIT 6.04839
280 1Z83 AP5 6.12245
281 3IUY AMP 6.14035
282 3PQC GDP 6.15385
283 1DS6 GDP 6.25
284 5C2N NAG 6.25
285 3MGB PAP 6.26959
286 1UAD GNP 6.28571
287 1ZC3 GNP 6.28571
288 1JJV ATP 6.31068
289 5UWO GNP 6.32911
290 6CIT GNP 6.32911
291 5UWP GNP 6.32911
292 5UWS GNP 6.32911
293 5UWH GNP 6.32911
294 5UWQ GNP 6.32911
295 5UWU GNP 6.32911
296 5DHF GNP 6.32911
297 5UWT GNP 6.32911
298 5DIF GNP 6.32911
299 5UWW GNP 6.32911
300 5UWI GNP 6.32911
301 5UWR GNP 6.32911
302 5UWJ GNP 6.32911
303 4XSH GSP 6.39269
304 1E96 GTP 6.40394
305 2OG2 MLI 6.45161
306 3B9Q MLI 6.45161
307 2O0J ADP 6.45161
308 2BIF SIN 6.45161
309 2BIF ANP 6.45161
310 5XDR ADP 6.45161
311 3ZFD ANP 6.45161
312 4GOJ GNP 6.45161
313 2FSH ANP 6.45161
314 1NHX FTB 6.45161
315 1NHX PEP 6.45161
316 2GMV UN8 6.45161
317 2GMV PEP 6.45161
318 4YMJ 4EJ 6.45161
319 3DUV KDO 6.45161
320 4FRZ ADP 6.45161
321 1NN5 2DT 6.51163
322 1NN5 ANP 6.51163
323 5E5U MLI 6.53266
324 1U8Z GDP 6.54762
325 4U00 ADP 6.55738
326 4HDO GNP 6.58683
327 2QTV GNP 6.58683
328 4HDQ GNP 6.58683
329 3X1Z GNP 6.58683
330 4P83 U5P 6.59341
331 4WOP CTP 6.66667
332 4U5X GNP 6.74157
333 5IFS ADP 6.75105
334 3EWA ANP 6.8323
335 1XXR MAN 6.8323
336 3E70 GDP 6.85484
337 4PX9 ADP 6.85484
338 5ZXD ATP 6.85484
339 5KSZ GCP 6.85484
340 2I4I AMP 6.85484
341 2VWT PYR 6.85484
342 5OLK DTP 6.85484
343 1A8S PPI 6.85484
344 1M5B BN1 6.85484
345 4X8O AP5 7.00935
346 4YDS ATP 7.01754
347 5WDR GNP 7.01754
348 4LPS GDP 7.02479
349 4BAS GNP 7.03518
350 1CS4 GSP 7.11111
351 1ZUI SKM 7.14286
352 4R2I ANP 7.14286
353 1MR3 G3D 7.18232
354 3Q72 GNP 7.22892
355 1Z0K GTP 7.24638
356 4ZG4 VO4 ADP 7.25806
357 4KVA GTP 7.25806
358 5NM7 GLY 7.25806
359 4BFW ZVW 7.25806
360 1F5N GNP 7.25806
361 2QZS ADP 7.25806
362 2QZS GLC 7.25806
363 2QZS 250 7.25806
364 2BCG GDP 7.28155
365 2CJW GDP 7.29167
366 1UKZ ADP 7.38916
367 3ZQ6 ADP ALF 7.40741
368 1GUA GNP 7.40741
369 2BME GNP 7.52688
370 5EE5 GTP 7.60234
371 1Z0J GTP 7.64706
372 2OZE AGS 7.66129
373 3DEF GDP 7.66129
374 1NJF ADP 7.66129
375 1NJF AGS 7.66129
376 1NY5 ADP 7.66129
377 3GJ7 GDP 7.69231
378 3GJ4 GDP 7.69231
379 3CH5 GDP 7.69231
380 3GJ5 GDP 7.69231
381 1YVD GNP 7.69231
382 1I4D GDP 7.8125
383 4HAT GNP 7.85714
384 2FH5 GTP 7.94393
385 2A19 ANP 8
386 3PCR GTP 8.02469
387 3COB ADP 8.06452
388 4YJ1 ADP 8.06452
389 3SFV GDP 8.06452
390 5IRR GSP 8.06452
391 2J5V PCA 8.06452
392 5H68 AGS 8.06452
393 1G3M PCQ 8.06452
394 1G3M A3P 8.06452
395 2YOH WMJ 8.09524
396 4YMU ATP 8.18182
397 1Z08 GNP 8.23529
398 3LXR GDP 8.33333
399 2FJU GSP 8.42697
400 2X77 GDP 8.46561
401 3KJI ADP 8.46774
402 3IO3 ADP 8.46774
403 1MKY GDP 8.46774
404 3TK1 GDP 8.46774
405 1XMV ADP 8.46774
406 1W7J ADP BEF 8.46774
407 1AQU A3P 8.46774
408 5M7P ADP 8.46774
409 2PZE ATP 8.73362
410 1FZQ GDP 8.83978
411 2IYL GDP 8.87097
412 2DPY ADP 8.87097
413 5L3V GDP 8.87097
414 1H65 GDP 8.87097
415 4HI0 GDP 8.87097
416 1WDT GTP 8.87097
417 1XKV ATP 8.87097
418 5H7K GDP 8.87097
419 1RJ9 GCP 8.87097
420 5M04 GDP 8.87097
421 1OS1 PYR 8.87097
422 1OS1 ATP 8.87097
423 5FTB ANP 8.87097
424 3DZD ADP 8.87097
425 5FHD ADP ALF 8.87097
426 1CR1 TTP 8.87097
427 1X8J A3P 8.87097
428 2XZ9 PYR 8.87097
429 1V97 FAD 8.87097
430 2GWH A3P 8.87097
431 5BQ5 ADP BEF 8.99471
432 1ZD9 GDP 9.04255
433 2F9L GDP 9.04523
434 3SBD GNP 9.09091
435 1KO8 6PG 9.14286
436 2W2X GSP 9.18919
437 1OFH ADP 9.1954
438 1IHU AF3 9.27419
439 1IHU ADP 9.27419
440 5GOE GDP 9.27419
441 2WHX ADP 9.27419
442 5UPK GNP 9.27419
443 3P4X ADP 9.27419
444 6CS8 F9Y 9.27419
445 1B7T ADP 9.27419
446 1KK8 BEF ADP 9.27419
447 2FAH GDP 9.27419
448 5WRJ A3P 9.27419
449 2JLR ANP 9.27419
450 5UPK ANP 9.27419
451 3FYH ADP 9.27419
452 5WRI A3P 9.27419
453 4CVN ADP 9.42408
454 1XP8 AGS 9.56284
455 1G7C 5GP 9.57447
456 1ZJ6 G3D 9.62567
457 4BQS K2Q 9.65909
458 4BQS ADP 9.65909
459 4WZA ACP 9.67742
460 4WZA ADP 9.67742
461 1FP6 ADP 9.67742
462 4PPF FLC 9.67742
463 6AU6 GDP 9.67742
464 5MZN ADP 9.67742
465 2XAU ADP 9.67742
466 5OEC GDP 9.83607
467 1KY3 GDP 9.89011
468 5JCZ GDP 10.0559
469 1KK1 GNP 10.0806
470 1TQ4 GDP 10.0806
471 1D2E GDP 10.0806
472 6FAA ADP 10.0806
473 1A8U BEZ 10.0806
474 1NRJ GTP 10.0917
475 4LX0 BEF GDP 10.1695
476 3TKL GTP 10.2041
477 3W5J GDP 10.2941
478 2W83 GTP 10.303
479 1S9D GDP 10.3448
480 4C4P GNP 10.4046
481 1P72 ADP 10.4839
482 5L3W GDP 10.4839
483 1G4U GDP 10.4839
484 1QF5 RPL 10.4839
485 1QF5 GDP 10.4839
486 5L3S GNP 10.4839
487 1K6M AGS 10.4839
488 4YSW NAI 10.4839
489 4YSW FAD 10.4839
490 6B8B ADP 10.4839
491 3IIJ ADP 10.5556
492 5X80 SAL 10.625
493 4E03 ADP 10.6796
494 5WC2 ADP 10.8871
495 6B4K ANP 10.8871
496 5JCP GDP ALF 10.8871
497 4KVG GTP 10.8871
498 1G41 ADP 10.8871
499 5I34 GDP 10.8871
500 3CV2 OXL 10.8871
501 1M7G AV2 10.9005
502 1M7G ADP 10.9005
503 1M7G ADX 10.9005
504 6A20 ADP 10.984
505 5O74 GDP 11.1111
506 3H4S ADP 11.1111
507 1HE1 GDP 11.1111
508 4ZDJ UTP 11.2903
509 2GKS ADP 11.2903
510 5IM3 DTP 11.2903
511 3CX8 GSP 11.33
512 3NKV GNP 11.4286
513 3H86 AP5 11.4583
514 3UIE ANP 11.5
515 2VOH CIT 11.5385
516 3T1O GDP 11.6162
517 3T12 GDP ALF 11.6162
518 2GK6 ADP 11.6935
519 4H1V GNP 11.6935
520 5UIV ADP 11.8943
521 3QF7 ANP 12
522 4ITR GDP 12.0419
523 5TSH ADP 12.0968
524 2VVG ADP 12.0968
525 5TSH ANP 12.0968
526 3E5H GNP 12.3596
527 5W76 GDP 12.5
528 2IS6 ADP 12.5
529 1Y63 ADP 12.5
530 1W0J ADP BEF 12.5
531 2V7Q ADP 12.5
532 2CK3 ANP 12.5
533 1W0J ADP 12.5
534 2CK3 ADP 12.5
535 2V7Q ATP 12.5
536 2GU8 796 12.5
537 6BCA GSP 12.5828
538 6BC0 GSP 12.6667
539 4YC7 GNP 12.7072
540 2XG5 EC2 12.7168
541 2XG5 EC5 12.7168
542 4P4T GDP 12.9032
543 5DZT AMP 12.9032
544 1YZN GNP 12.973
545 4KAX GTP 13.0178
546 3DOE GTP 13.0208
547 1KSH GDP 13.4409
548 3N5C GDP 13.5802
549 5N69 ADP 13.7097
550 3BFX A3P 13.7097
551 1Z06 GNP 13.7566
552 4DID GDP 13.8158
553 2RGX AP5 14.0777
554 2ZPA ADP 14.1129
555 4GOX A3P 14.1129
556 2D7D ADP 14.1129
557 4A4Z ANP 14.1129
558 3GJ8 GDP 14.1304
559 5MVR ADP 14.1975
560 3ZIA ADP 14.2857
561 1FQJ GDP 14.2857
562 3ZIA ATP 14.2857
563 5SZH GNP 14.2857
564 5K5Z ANP 14.5161
565 1LVK MNT BEF 14.5161
566 1G7S GDP 14.5161
567 4ZNL BEF ADP 14.5161
568 3A4M ADP 14.6154
569 2A5F GTP 14.8571
570 4TMZ GSP 14.9194
571 4NCN GTP 14.9194
572 4R43 GDP 15.3226
573 1X6V ADP 15.3226
574 3LQV ADE 15.3846
575 1J2J GTP 15.5556
576 1GWN GTP 15.6098
577 5YT0 GDP 15.7258
578 5FG3 GDP 15.7258
579 1HTW ADP 15.8228
580 1EK0 GNP 15.8824
581 4OI4 ATP 16.129
582 5Z69 AGS 16.5323
583 3BC1 GNP 16.9492
584 1M7B GTP 17.3913
585 3T5G GDP 17.6796
586 1WA5 GTP 17.7419
587 2WMO GTP 17.7419
588 1OYY AGS 17.7419
589 6BSX E7S 17.9775
590 6BSX GDP 17.9775
591 4QOS ADP 18.1452
592 2OFW ADX 18.2692
593 1Z2A GDP 18.4524
594 1X1R GDP 18.5484
595 1YTM ATP 18.5484
596 2ZR9 DTP 18.9516
597 5YVT NAI 19.3548
598 1P9B GDP 19.3548
599 5H67 ATP 19.598
600 1R4A GNP 19.6078
601 4QM7 GTP 19.883
602 2PEZ DAT 20.1117
603 2PEZ GGZ 20.1117
604 4LHW GNP 20.1149
605 1G6H ADP 20.1613
606 5KDO GDP 20.2703
607 3QBT GNP 20.6897
608 3TNF GNP 20.6897
609 1ZIN AP5 21.1982
610 2X7I CIT 21.7742
611 6AIC AMP 21.7742
612 4V0K GDP 21.8935
613 1KAO GDP 22.1557
614 5UQW GDP 22.2222
615 5OCG GNP 22.2222
616 2WJG GDP 22.3404
617 5DI3 GNP 22.5806
618 5TB5 GDP 22.7027
619 5TAR GDP 22.7027
620 5Z84 CHD 23.2877
621 1YRB GDP 23.7903
622 5L3R GCP 24.1935
623 2BEK ATP 24.5968
624 4M9Q GNP 24.6696
625 5O2T GSP 24.8521
626 2C5L GTP 24.8555
627 4K81 GTP 25.1462
628 5E95 GDP 25.5952
629 3KUD GDP 25.9036
630 1CLU DBG 25.9036
631 3DDC GNP 25.9036
632 2UZI GTP 25.9036
633 1UO5 PIH 26.4706
634 1JJ7 ADP 27.0161
635 2HCJ GDP 27.027
636 4ZI2 GNP 27.0677
637 3KTA AP5 28.022
638 1XEX ATP 28.022
639 5DI9 GNP 28.5714
640 4RZ3 ADP 29.4355
641 2QN6 GDP 30.1075
642 3BFV ADP 30.2419
643 3Q9L ATP 30.6452
644 5J1J ANP 31.8548
645 4JLV ADP 34.2742
646 3FWY ADP 35.4839
647 4V03 ADP 36.6936
648 1ION ADP 37.8601
649 5LEF GTP 37.8788
650 2OM2 GDP 38.8889
651 1G3Q ADP 40.9283
Pocket No.: 2; Query (leader) PDB : 3VX3; Ligand: ADP; Similar sites found with APoc: 46
This union binding pocket(no: 2) in the query (biounit: 3vx3.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 5KK4 44E None
2 4RJD TFP None
3 6AC9 ANP 2.01613
4 4JD3 PLM 2.41935
5 1SQL GUN 2.73973
6 3FSY SCA 2.82258
7 5WBF LAC 2.82258
8 2CXG GLC GLC 2.82258
9 1K7U NAG NAG 3.22581
10 2F3R G5P 3.38164
11 4L77 CNL 3.62903
12 3FRH SAH 3.62903
13 2CFC KPC 3.62903
14 2XOC ADP 3.62903
15 3COW 52H 3.62903
16 2Z49 AMG 4.03226
17 2YP9 SIA CMO 4.03226
18 2W8Q SIN 4.03226
19 2CFM AMP 4.03226
20 3HDY GDU 4.43548
21 4UTG ANP 4.43548
22 4MSG 2C6 5.06912
23 3AB4 LYS 5.22565
24 4ZGP ADP 5.24194
25 2E5V FAD 5.24194
26 4OUC 5ID 5.24194
27 2MBR FAD 5.24194
28 2QG6 NMN 5.52764
29 2HJ4 PNZ 5.92593
30 1COY AND 6.45161
31 4L2I NAD 6.85484
32 4L2I FAD 6.85484
33 5XLA SIA 8.06452
34 3KLL MAL 8.46774
35 5J1S ATP 8.87097
36 4TQK NAG 8.87097
37 4XH0 ADP 8.87097
38 3QDK QDK 10.4839
39 2GJ5 VD3 11.1111
40 3BY8 MLT 11.2676
41 3QVV 3QV 12.9032
42 3QVV A3P 12.9032
43 5ODQ FAD 13.3065
44 3WMX THR 13.7097
45 5TCI MLI 14.9194
46 6C8X BVR 15.1515
APoc FAQ
Feedback