Receptor
PDB id Resolution Class Description Source Keywords
3UWB 1.7 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF A PROBABLE PEPTIDE DEFORMYLASE FROM STRUCYNECHOCOCCUS PHAGE S-SSM7 IN COMPLEX WITH ACTINONIN SYNECHOCOCCUS PHAGE S-SSM7 SYNECHOCOCCUS PHAGE ACTINONIN PROBABLE PEPTIDE DEFORMYLASEHYDROLASE-ANTIBIOTIC COMPLEX
Ref.: STRUCTURE AND FUNCTION OF A CYANOPHAGE-ENCODED PEPT DEFORMYLASE. ISME J V. 7 1150 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CL A:202;
 Invalid;
 none;
 submit data
35.453 Cl [Cl-]
EDO A:203;
 Invalid;
 none;
 submit data
62.068 C2 H6 O2 C(CO)...
ZN A:200;
 Part of Protein;
 none;
 submit data
65.409 Zn [Zn+2...
BB2 A:154;
 Valid;
 none;
 ic50 = 10 nM
385.498 C19 H35 N3 O5 CCCCC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3UWB 1.7 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF A PROBABLE PEPTIDE DEFORMYLASE FROM STRUCYNECHOCOCCUS PHAGE S-SSM7 IN COMPLEX WITH ACTINONIN SYNECHOCOCCUS PHAGE S-SSM7 SYNECHOCOCCUS PHAGE ACTINONIN PROBABLE PEPTIDE DEFORMYLASEHYDROLASE-ANTIBIOTIC COMPLEX
Ref.: STRUCTURE AND FUNCTION OF A CYANOPHAGE-ENCODED PEPT DEFORMYLASE. ISME J V. 7 1150 2013
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 3UWB ic50 = 10 nM BB2 C19 H35 N3 O5 CCCCC[C@H]....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 3UWB ic50 = 10 nM BB2 C19 H35 N3 O5 CCCCC[C@H]....
50% Homology Family (14)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 1G2A ic50 = 10 nM BB2 C19 H35 N3 O5 CCCCC[C@H]....
2 1BS8 - MET ALA SER n/a n/a
3 2AI8 ic50 = 0.16 uM SB7 C10 H15 N O2 c1ccc(cc1)....
4 1G27 ic50 = 7 nM BB1 C16 H31 N3 O4 CCCC[C@H](....
5 1LRU - BB2 C19 H35 N3 O5 CCCCC[C@H]....
6 1BS6 - MET ALA SER n/a n/a
7 2EW6 ic50 = 10.8 uM Y13 C17 H17 N O4 c1cc(ccc1C....
8 2EW5 ic50 = 1.25 uM Y12 C21 H21 N O5 CC(=O)Oc1c....
9 3UWB ic50 = 10 nM BB2 C19 H35 N3 O5 CCCCC[C@H]....
10 1RL4 ic50 = 130 nM BL5 C38 H62 N8 O4 CCCC[C@@H]....
11 1S17 ic50 < 5 nM GNR C10 H10 N2 O3 S c1ccc2c(c1....
12 1IX1 - BB2 C19 H35 N3 O5 CCCCC[C@H]....
13 4DR9 ic50 = 10 nM BB2 C19 H35 N3 O5 CCCCC[C@H]....
14 3M6Q Kd = 48 nM BB2 C19 H35 N3 O5 CCCCC[C@H]....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BB2; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 BB2 1 1
Similar Ligands (3D)
Ligand no: 1; Ligand: BB2; Similar ligands found: 1
No: Ligand Similarity coefficient
1 BB1 0.8743
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3UWB; Ligand: BB2; Similar sites found with APoc: 9
This union binding pocket(no: 1) in the query (biounit: 3uwb.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 3G5K BB2 49.3507
2 3G5K BB2 49.3507
3 3E3U NVC 49.3507
4 3G5K BB2 49.3507
5 3G5K BB2 49.3507
6 3G5K BB2 49.3507
7 3G5K BB2 49.3507
8 3G5K BB2 49.3507
9 3G5K BB2 49.3507
10 1WS1 BB2 50
APoc FAQ
Feedback