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Receptor
PDB id Resolution Class Description Source Keywords
3U6K 2.45 Å NON-ENZYME: OTHER EF-TU (ESCHERICHIA COLI) IN COMPLEX WITH NVP-LDK733 ESCHERICHIA COLI TRANSLATION FACTOR-ANTIBIOTIC COMPLEX
Ref.: ANTIBACTERIAL OPTIMIZATION OF 4-AMINOTHIAZOLYL ANAL THE NATURAL PRODUCT GE2270 A: IDENTIFICATION OF THE CYCLOALKYLCARBOXYLIC ACIDS. J.MED.CHEM. V. 54 8099 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:500;
B:500;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:394;
B:394;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3U6K 2.45 Å NON-ENZYME: OTHER EF-TU (ESCHERICHIA COLI) IN COMPLEX WITH NVP-LDK733 ESCHERICHIA COLI TRANSLATION FACTOR-ANTIBIOTIC COMPLEX
Ref.: ANTIBACTERIAL OPTIMIZATION OF 4-AMINOTHIAZOLYL ANAL THE NATURAL PRODUCT GE2270 A: IDENTIFICATION OF THE CYCLOALKYLCARBOXYLIC ACIDS. J.MED.CHEM. V. 54 8099 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3U6K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3U6K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 3U6K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3U6K; Ligand: GDP; Similar sites found with APoc: 579
This union binding pocket(no: 1) in the query (biounit: 3u6k.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 1EK0 GNP None
2 1D5C GDP 1.23457
3 1YTM ATP 1.26904
4 2F3R G5P 1.26904
5 2WKQ GTP 1.50602
6 1V8K ANP 1.52284
7 1ZUA NAP 1.57729
8 1ZUA TOL 1.57729
9 4FCW ADP 1.60772
10 1Z0F GDP 1.67598
11 2GWH A3P 1.67785
12 3ZS9 ADP ALF 1.69492
13 2WOJ ADP ALF 1.69492
14 3QVV 3QV 1.69492
15 3QVV A3P 1.69492
16 2G77 GDP 1.77665
17 5HR5 ADP 1.77665
18 5LB3 ADP 1.77665
19 2XAU ADP 1.77665
20 2G77 AF3 1.77665
21 4LIK CIT 1.78571
22 1P9B GDP 1.80995
23 4ZNL BEF ADP 1.82482
24 1NST A3P 1.84615
25 1TAD GDP 1.85185
26 1TAD ALF 1.85185
27 1U0J ADP 1.87266
28 5L3W GDP 1.96078
29 2F9L GDP 2.01005
30 5TSH ADP 2.03046
31 5TSH ANP 2.03046
32 1XKV ATP 2.03046
33 1OIX GDP 2.09424
34 1OIV GDP 2.09424
35 1G6O ADP 2.12121
36 1MH1 GNP 2.15054
37 1G4U GDP 2.17391
38 5MEX SZZ 2.17391
39 5MEX PAP 2.17391
40 2B8T THM 2.24215
41 2VVG ADP 2.28426
42 5ZXD ATP 2.28426
43 2DPY ADP 2.28426
44 5AK0 8V1 2.28426
45 3NHB ADP 2.28426
46 4A4Z ANP 2.28426
47 1K6M AGS 2.28426
48 3DEF GDP 2.29008
49 1VHT BA3 2.29358
50 5HCN GCP 2.29885
51 4KFU ACP 2.35849
52 4R2I ANP 2.38095
53 2D7C GTP 2.39521
54 3BER AMP 2.40964
55 1E2K TMC 2.41692
56 3DZD ADP 2.44565
57 2ZFI ADP 2.45902
58 3ZQ6 ADP ALF 2.46914
59 4LPS GDP 2.47934
60 4IXH IMP 2.49307
61 4P4T GDP 2.5
62 3FVQ ATP 2.50696
63 5KSZ GCP 2.53807
64 2GKS ADP 2.53807
65 4HSE ADP 2.53807
66 4IOK XPO 2.53807
67 4IOK ADP 2.53807
68 1IHU AF3 2.53807
69 5TIV A3P 2.53807
70 1IHU ADP 2.53807
71 2I4I AMP 2.53807
72 1OYY AGS 2.53807
73 4I6G FAD 2.53807
74 2VWT PYR 2.62172
75 5BQ5 ADP BEF 2.6455
76 1CR1 TTP 2.7027
77 1F2U ATP 2.7027
78 3TMK T5A 2.77778
79 2QTV GNP 2.79188
80 2C9O ADP 2.79188
81 1G41 ADP 2.79188
82 1F5N GNP 2.79188
83 1Q19 APC 2.79188
84 2NYA MGD 2.79188
85 4TMK T5A 2.8169
86 3IQE F42 2.82686
87 4BQS ADP 2.84091
88 4BQS K2Q 2.84091
89 1LDN FBP 2.8481
90 2ZR9 DTP 2.86533
91 3QXC ATP 2.89256
92 1SVM ATP 2.91777
93 2FFQ GSP 2.92398
94 1YZQ GNP 2.94118
95 1R2Q GNP 2.94118
96 3QKT ANP 2.94985
97 3MJH GTP 2.97619
98 1RRC ADP 2.99003
99 3Q72 GNP 3.01205
100 5LLB 6YZ 3.04183
101 1OE0 TTP 3.04348
102 1GOT GDP 3.04569
103 4IHQ ADP 3.04569
104 4YS0 ADP 3.04569
105 5MZN ADP 3.04569
106 5I0H ADP BEF 3.04569
107 4Z87 5GP 3.04762
108 2EUG URA 3.05677
109 1GOJ ADP 3.09859
110 2XTZ GSP 3.10734
111 3ZFD ANP 3.1339
112 3VX3 ADP 3.22581
113 2FH5 GTP 3.24324
114 3ITJ CIT 3.25444
115 1P72 ADP 3.29341
116 1QF5 GDP 3.29949
117 1QF5 RPL 3.29949
118 4PFO ADP 3.29949
119 4PJ3 ANP 3.29949
120 1UH4 GLC GLC GLC GLC GLC GLC 3.29949
121 2C42 TPP 3.29949
122 2C42 PYR 3.29949
123 2B8W ALF 5GP 3.35366
124 1JJV ATP 3.39806
125 5XC5 GTP 3.40909
126 3FYH ADP 3.41615
127 5X40 ACP 3.42466
128 3B7G ANP 3.47826
129 3UIE ANP 3.5
130 4GOX A3P 3.51438
131 2JJK R15 3.5503
132 1W0J ADP 3.5533
133 2CK3 ANP 3.5533
134 2CK3 ADP 3.5533
135 3TBK ANP 3.5533
136 2ZPA ADP 3.5533
137 1W0J ADP BEF 3.5533
138 5XQL C2E 3.5533
139 3CV2 OXL 3.5533
140 2ZE7 DST 3.55731
141 5AHO TLA 3.57143
142 1KAO GDP 3.59281
143 3H86 AP5 3.64583
144 4XTR ADP 3.68664
145 4XTR ATP 3.68664
146 4XVU ATP 3.68664
147 1S3G AP5 3.68664
148 2Z5F A3P 3.69128
149 5UQW GDP 3.7037
150 4GBM A3P 3.71517
151 5UR0 NAD 3.72493
152 2ZPT A3P 3.72881
153 4WZ6 ATP 3.7931
154 1TU3 GNP 3.79747
155 4UXH T5A 3.80435
156 1T3D CYS 3.80623
157 1Z06 GNP 3.80711
158 2BCG GDP 3.80711
159 2BIF ANP 3.80711
160 2BIF SIN 3.80711
161 3HU3 AGS 3.80711
162 1R6B ADP 3.80711
163 1RJW ETF 3.83481
164 1JJ7 ADP 3.84615
165 5GVR LMR 3.84615
166 1FNN ADP 3.85604
167 1VKJ A3P 3.85965
168 1MR3 G3D 3.8674
169 5M04 GDP 3.88889
170 3ZIA ATP 3.95683
171 3ZIA ADP 3.95683
172 2QG6 NMN 4.0201
173 3DC4 ADP 4.06091
174 2FAH GDP 4.06091
175 2AWN ADP 4.06091
176 2FSH ANP 4.06091
177 5WRI A3P 4.0625
178 4AG5 ADP 4.08163
179 2Q2Y ADP 4.08719
180 2Q2Y MKR 4.08719
181 3QF7 ANP 4.10959
182 1ION ADP 4.11523
183 3BOS CDP 4.13223
184 3Q85 GNP 4.14201
185 1ZUI SKM 4.16667
186 2GDJ ANP 4.16667
187 4HDO GNP 4.19162
188 1O3Y GTP 4.21687
189 1J2J GTP 4.21687
190 1G3Q ADP 4.21941
191 2J0V GDP 4.24528
192 3QBT GNP 4.28571
193 5WRJ A3P 4.29043
194 4ZG4 VO4 ADP 4.31472
195 4X8O AP5 4.31472
196 3FIU POP 4.31472
197 3RWO GDP 4.32432
198 5L3V GDP 4.34783
199 5L3S GNP 4.36242
200 2CHG ANP 4.42478
201 1RYH GNP 4.4335
202 4PX9 ADP 4.45205
203 2GCO GNP 4.47761
204 2GCN GDP 4.47761
205 4U00 ADP 4.5082
206 5HGZ ACO 4.52675
207 1OS1 ATP 4.56853
208 1OS1 PYR 4.56853
209 1XMV ADP 4.56853
210 4NON GDP 4.61538
211 4KBF AMP 4.65753
212 4FRZ ADP 4.66321
213 1Q20 PLO 4.68227
214 1Q20 A3P 4.68227
215 1Z08 GNP 4.70588
216 1J99 AND 4.77816
217 2A5F GTP 4.82234
218 1NY5 ADP 4.82234
219 1X8J A3P 4.82234
220 4O33 3PG 4.82234
221 4O33 TZN 4.82234
222 1VG0 GDP 4.83092
223 1VG8 GNP 4.83092
224 3COB ADP 4.87805
225 2JAQ DCP 4.87805
226 1DAK DPU 4.91071
227 1DAK ADP 4.91071
228 3JVH HHV 4.91803
229 2IYL GDP 4.92958
230 1KY3 GDP 4.94506
231 2W58 ADP 4.9505
232 1RE0 GDP 4.97738
233 5XKT GNP 5
234 4Q1A UDP 5
235 4Q1A 2XZ 5
236 4LJ9 ACP 5.01475
237 2ZEJ GDP 5.07614
238 4M9Q GNP 5.07614
239 1LVK MNT BEF 5.07614
240 1W5T ADP 5.07614
241 1W5T ANP 5.07614
242 3FB4 AP5 5.09259
243 4TTQ ATP 5.11628
244 3KJI ADP 5.11811
245 1KO8 6PG 5.14286
246 1FL2 FAD 5.16129
247 1H65 GDP 5.18518
248 2O0J ADP 5.19481
249 2D2F ADP 5.2
250 5KSP GDP 5.26316
251 5KUT GDP 5.29101
252 1KUV CA5 5.31401
253 4R43 GDP 5.32995
254 2NCD ADP 5.32995
255 4IDN GNP 5.32995
256 5BN3 ADP 5.32995
257 4AF0 IMP 5.32995
258 5BUK FAD 5.32995
259 3BD9 A3P 5.35714
260 1IN4 ADP 5.38922
261 1VG9 GDP 5.40541
262 1VG1 GDP 5.40541
263 1UKZ ADP 5.41872
264 1CJW COT 5.42169
265 1T5C ADP 5.44413
266 1XP8 AGS 5.46448
267 5U32 GDP 5.50847
268 4MKG AP5 5.52995
269 1L2T ATP 5.53191
270 3T1O GDP 5.55556
271 1UJ2 ADP 5.55556
272 1UJ2 C5P 5.55556
273 1WF3 GNP 5.58376
274 6CRK GDP 5.58376
275 1GP2 GDP 5.58376
276 5KDO GDP 5.58376
277 1SVK ALF GDP 5.58376
278 3BFX A3P 5.58376
279 6BSX GDP 5.61798
280 6BSX E7S 5.61798
281 3REF GDP 5.6701
282 5Z2M GTP 5.68182
283 1YRB GDP 5.72519
284 2HF9 GSP 5.75221
285 6FA4 GNP 5.78035
286 2RGX AP5 5.82524
287 2BEK ATP 5.83658
288 1G3M A3P 5.83756
289 1G3M PCQ 5.83756
290 3MGB PAP 5.83756
291 2IXE ATP 5.83756
292 1IWE IMP 5.9081
293 2BME GNP 5.91398
294 1YZN GNP 5.94595
295 1BO4 COA 5.95238
296 2CDN ADP 5.97015
297 2QQ0 THM 5.97826
298 2QQ0 ANP 5.97826
299 2QQ0 TMP 5.97826
300 2QQ0 ADP 5.97826
301 4MKF AP5 5.99078
302 1BH2 GSP 6.03175
303 3FWY ADP 6.05096
304 1TQ4 GDP 6.05327
305 4OI4 ATP 6.08696
306 4WZA ADP 6.09137
307 4WZA ACP 6.09137
308 5I34 GDP 6.09137
309 3RC3 ANP 6.09137
310 3DKP ADP 6.12245
311 5ZBR ANP 6.13333
312 3IUY AMP 6.14035
313 4U5X GNP 6.17978
314 1M2O GNP 6.31579
315 1X6V ADP 6.34518
316 1FP6 ADP 6.34518
317 1Z6T ADP 6.34518
318 4IEE AGS 6.34518
319 2PL3 ADP 6.35593
320 4K81 GTP 6.43275
321 4QM7 GTP 6.43275
322 4NU0 AP5 6.45161
323 4V0K GDP 6.50888
324 6D5J GNP 6.58683
325 6D5E GNP 6.58683
326 6D59 GNP 6.58683
327 6D55 GNP 6.58683
328 6BVJ GNP 6.58683
329 6D56 GNP 6.58683
330 6BVL GNP 6.58683
331 6D5V GNP 6.58683
332 6D5G GNP 6.58683
333 6BVI GNP 6.58683
334 6BVK GNP 6.58683
335 6D5H GNP 6.58683
336 6D5L GNP 6.58683
337 6D5M GNP 6.58683
338 6BVM GNP 6.58683
339 1GXU 2HP 6.59341
340 1CLU DBG 6.62651
341 3KUD GDP 6.62651
342 1WQ1 GDP 6.62651
343 1NVV GNP 6.62651
344 3DDC GNP 6.62651
345 3H4S ADP 6.66667
346 1JI0 ATP 6.66667
347 4WOP CTP 6.66667
348 2OG2 MLI 6.68524
349 2VB6 ADP BEF 6.71141
350 2C5L GTP 6.83761
351 2Y65 ADP 6.84932
352 3CX8 GSP 6.85279
353 3AB3 GDP 6.85279
354 1RJ9 GCP 6.85279
355 1F9V ADP 6.85279
356 1S9D GDP 6.89655
357 5O2T GSP 6.95187
358 2XT3 ADP 6.97674
359 2GJ8 ALF GDP 6.97674
360 5UIV ADP 7.04846
361 5ZB0 TYD 7.07071
362 5ZB0 ADP 7.07071
363 1OXV ANP 7.08215
364 2RCN GDP 7.1066
365 3P4X ADP 7.1066
366 4QOS ADP 7.1066
367 5BYK A3P 7.1066
368 5BYK OAQ 7.1066
369 3WQT ANP 7.1066
370 1FZQ GDP 7.18232
371 6GAS FAD 7.25076
372 4LC1 GDP 7.4184
373 4D81 ADP 7.42049
374 3RLF ANP 7.43243
375 1ZJ6 G3D 7.48663
376 2D7D ADP 7.5
377 5IRC GDP 7.52688
378 2W2X GSP 7.56757
379 3MD0 GDP 7.60563
380 1KMQ GNP 7.6087
381 3E70 GDP 7.62195
382 1Z83 AP5 7.65306
383 1YVD GNP 7.69231
384 1PVN MZP 7.71277
385 2HV8 GTP 7.8125
386 2IS6 ADP 7.86802
387 3TK1 GDP 7.87879
388 1TX4 ALF GDP 7.9096
389 5OCG GNP 7.93651
390 3B9Q MLI 7.94702
391 1BG2 ADP 8
392 1B0U ATP 8.01527
393 1AQU A3P 8.08081
394 1YQT ADP 8.12183
395 5YV5 ADP 8.12183
396 1FQK GDP 8.16327
397 5L3R GCP 8.19113
398 6CS8 F9Y 8.25082
399 1GWN GTP 8.29268
400 5O74 GDP 8.33333
401 1I4D GDP 8.33333
402 1DS6 GDP 8.33333
403 1E96 GTP 8.37438
404 3M1I GTP 8.37696
405 2KIN ADP 8.40336
406 4C4P GNP 8.41121
407 1PUJ GNP 8.51064
408 4HI0 GDP 8.54271
409 3SBD GNP 8.55615
410 2OFW ADX 8.65385
411 1Z0K GTP 8.72093
412 1T8U A3P 8.82353
413 1T8U UAP SGN IDS SGN 8.82353
414 3A4M ADP 8.84615
415 4DCT GDP 8.88325
416 1S8F GDP 8.88325
417 2GMV UN8 8.88325
418 1NHX FTB 8.88325
419 2GMV PEP 8.88325
420 1NHX PEP 8.88325
421 1YZG GDP 8.93855
422 2XTN GTP 8.97436
423 2FJU GSP 8.98876
424 5NM7 GLY 9.02256
425 3B5J 12D 9.0535
426 1R4A GNP 9.09091
427 1LVG ADP 9.09091
428 1HE1 GDP 9.09091
429 2V7Q ATP 9.09091
430 2V7Q ADP 9.09091
431 4GDX GLU 9.23077
432 6B8B ADP 9.23695
433 1M7B GTP 9.23913
434 4NE2 SH2 9.28144
435 4NE2 ADP 9.28144
436 2GK6 ADP 9.39086
437 2QEN ADP 9.42857
438 3IIJ ADP 9.44444
439 2PEZ GGZ 9.49721
440 2PEZ DAT 9.49721
441 3BFV ADP 9.5941
442 1B7T ADP 9.61539
443 6DVH FMN 9.64467
444 1KK8 BEF ADP 9.74026
445 4BFW ZVW 9.74843
446 1OFH ADP 9.77011
447 4DID GDP 9.84456
448 3KTA AP5 9.89011
449 4ZDJ UTP 9.89848
450 1NJF ADP 10
451 1NJF AGS 10
452 4BAS GNP 10.0503
453 1SQ5 ADP 10.0649
454 5CK5 GDP 10.1266
455 1NF3 GNP 10.2564
456 5UPK GNP 10.2703
457 4TL6 ANP 10.2767
458 1D2N ANP 10.2941
459 1QF9 C5P 10.3093
460 1QF9 ADP 10.3093
461 1QF9 ALF 10.3093
462 5HPY GDP 10.3448
463 1ZIN AP5 10.4061
464 2ZJ5 ADP 10.4061
465 3GJ8 GDP 10.4072
466 3GJ0 GDP 10.4072
467 3GJ3 GDP 10.4072
468 3GJ4 GDP 10.4072
469 3GJ5 GDP 10.4072
470 2CJW GDP 10.4167
471 1XEX ATP 10.4396
472 2NGR GDP 10.4712
473 1A4R GNH 10.4712
474 1GRN GDP 10.4712
475 1A4R GDP 10.4712
476 4ITR GDP 10.4712
477 2UZI GTP 10.5769
478 5BXQ GDP 10.6481
479 1IBR GNP 10.6481
480 2A9K GDP 10.6952
481 4HUT ATP 10.9948
482 5N69 ADP 11.0553
483 4H1V GNP 11.1111
484 6AU6 GDP 11.1675
485 5Y6N ADP 11.1675
486 6B4K ANP 11.1675
487 3GJ7 GDP 11.2245
488 1ZC3 GNP 11.4286
489 2QZ4 ADP 11.4504
490 5EXT ADP 11.5385
491 3T12 GDP ALF 11.7647
492 5WLB GNP 11.7647
493 1M7G AV2 11.8483
494 1M7G ADX 11.8483
495 1M7G ADP 11.8483
496 1U8Z GDP 11.9048
497 2YOH WMJ 11.9048
498 1OW3 GDP 11.9171
499 2A5J GDP 12.0419
500 5Z69 AGS 12.0968
501 2CE7 ADP 12.1827
502 2WIC GNP 12.3596
503 4D0N GDP 12.4324
504 1CS4 GSP 12.6904
505 1G6H ADP 12.8405
506 4HAT GNP 12.8571
507 1WA5 GTP 13.0682
508 1Z2A GDP 13.0952
509 1Z0A GDP 13.2184
510 1W7J ADP BEF 13.245
511 2ORV 4TA 13.2479
512 6DEF GCP 13.2992
513 1SVI GDP 13.3333
514 4QRH 0O2 13.3333
515 2HT6 GDP 13.4518
516 4NCN GTP 13.4518
517 6C90 ADP 13.4615
518 1AKY AP5 13.6364
519 3T5G GDP 13.8158
520 2VBQ BSJ 13.9394
521 5TB5 GDP 14
522 5TAR GDP 14.1892
523 1XX6 ADP 14.6597
524 3RAB GNP 14.7929
525 1G16 GDP 15.2941
526 5UWQ GNP 15.3846
527 5UWU GNP 15.3846
528 5UWP GNP 15.3846
529 6CIT GNP 15.3846
530 5UWI GNP 15.3846
531 5UWR GNP 15.3846
532 5UWW GNP 15.3846
533 5UWO GNP 15.3846
534 5UWH GNP 15.3846
535 5UWT GNP 15.3846
536 5UWS GNP 15.3846
537 5UWJ GNP 15.3846
538 5DI9 GNP 15.3846
539 1G7S GDP 15.4822
540 1DAR GDP 15.4822
541 3EC1 GDP 15.4822
542 2ODE ALF GDP 15.6028
543 4YMU ATP 15.8333
544 1W4R TTP 15.8974
545 4B47 GDP 15.978
546 1F6B GDP 16.1616
547 2WHX ADP 16.2437
548 2JLR ANP 16.2437
549 1UPT GTP 16.6667
550 2OM2 GDP 16.6667
551 3A1S GDP 17.0543
552 1CXZ GSP 17.4419
553 3W5J GDP 17.5127
554 1KSH GDP 18.2796
555 1NRJ GTP 18.3486
556 3BC1 GNP 18.4615
557 1NN5 ANP 18.6047
558 1NN5 2DT 18.6047
559 4CVN ADP 18.8482
560 1MKY GDP 19.5431
561 1ZD9 GDP 19.6809
562 4R98 GNH 19.9262
563 1GUA GNP 21.5569
564 1LFD GNP 21.8391
565 1Z0J GTP 22.0339
566 1X1R GDP 23.5955
567 6G14 G4P 24.3655
568 2WJG GDP 26.0638
569 3PQC GDP 26.1538
570 3CH5 GDP 28.8462
571 2WJH GDP 29.5181
572 2WJH FLC 29.5181
573 5FG3 GDP 29.6954
574 1FQJ GDP 30.9524
575 5DIF GNP 31.5789
576 5YT0 GDP 31.5934
577 4RD0 GDP 35.7868
578 2QN6 GDP 36.0406
579 1KK1 GNP 42.3858
580 1Y3A GDP 50
Pocket No.: 2; Query (leader) PDB : 3U6K; Ligand: GDP; Similar sites found with APoc: 11
This union binding pocket(no: 2) in the query (biounit: 3u6k.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 2J5V PCA 2.45232
2 5TWB FAD 2.90698
3 1JBW ACQ 3.29949
4 6ECT SAM 3.80711
5 4Z0G 5GP 4.06091
6 5E5U MLI 4.16667
7 2V5K OXM 5.22648
8 5HH0 COA 5.5
9 6F7L FAD 5.58376
10 4KVL PLM 6.09137
11 4DDY DN6 11.7871
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