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Receptor
PDB id Resolution Class Description Source Keywords
3U6B 2.12 Å NON-ENZYME: OTHER EF-TU (ESCHERICHIA COLI) IN COMPLEX WITH NVP-LDI028 ESCHERICHIA COLI TRANSLATION FACTOR-ANTIBIOTIC COMPLEX
Ref.: ANTIBACTERIAL OPTIMIZATION OF 4-AMINOTHIAZOLYL ANAL THE NATURAL PRODUCT GE2270 A: IDENTIFICATION OF THE CYCLOALKYLCARBOXYLIC ACIDS. J.MED.CHEM. V. 54 8099 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:402;
B:401;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:401;
B:402;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3U6B 2.12 Å NON-ENZYME: OTHER EF-TU (ESCHERICHIA COLI) IN COMPLEX WITH NVP-LDI028 ESCHERICHIA COLI TRANSLATION FACTOR-ANTIBIOTIC COMPLEX
Ref.: ANTIBACTERIAL OPTIMIZATION OF 4-AMINOTHIAZOLYL ANAL THE NATURAL PRODUCT GE2270 A: IDENTIFICATION OF THE CYCLOALKYLCARBOXYLIC ACIDS. J.MED.CHEM. V. 54 8099 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3U6B - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3U6B - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 3U6B - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3U6B; Ligand: GDP; Similar sites found with APoc: 602
This union binding pocket(no: 1) in the query (biounit: 3u6b.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1EK0 GNP None
2 1D5C GDP 1.23457
3 1YTM ATP 1.26904
4 2F3R G5P 1.26904
5 4B9E FAH 1.3289
6 2WKQ GTP 1.50602
7 1V8K ANP 1.52284
8 1DJN ADP 1.52284
9 4FCW ADP 1.60772
10 1Z0F GDP 1.67598
11 2GWH A3P 1.67785
12 3ZS9 ADP ALF 1.69492
13 2WOJ ADP ALF 1.69492
14 3QVV 3QV 1.69492
15 3QVV A3P 1.69492
16 4M7V RAR 1.71429
17 4M7V NAP 1.71429
18 2G77 GDP 1.77665
19 5HR5 ADP 1.77665
20 5LB3 ADP 1.77665
21 2XAU ADP 1.77665
22 2G77 AF3 1.77665
23 4LIK CIT 1.78571
24 1P9B GDP 1.80995
25 4ZNL BEF ADP 1.82482
26 1NST A3P 1.84615
27 1TAD GDP 1.85185
28 1TAD ALF 1.85185
29 1U0J ADP 1.87266
30 1BOB ACO 1.875
31 5L3W GDP 1.96078
32 4GNC ASO 2.00669
33 2F9L GDP 2.01005
34 5TSH ANP 2.03046
35 5TSH ADP 2.03046
36 1XKV ATP 2.03046
37 1OIX GDP 2.09424
38 1OIV GDP 2.09424
39 1G6O ADP 2.12121
40 1MH1 GNP 2.15054
41 1G4U GDP 2.17391
42 5MEX SZZ 2.17391
43 5MEX PAP 2.17391
44 2B8T THM 2.24215
45 2VVG ADP 2.28426
46 5ZXD ATP 2.28426
47 5AK0 8V1 2.28426
48 1K6M AGS 2.28426
49 3NHB ADP 2.28426
50 2DPY ADP 2.28426
51 4A4Z ANP 2.28426
52 3DEF GDP 2.29008
53 1VHT BA3 2.29358
54 5HCN GCP 2.29885
55 4KFU ACP 2.35849
56 4R2I ANP 2.38095
57 2D7C GTP 2.39521
58 3BER AMP 2.40964
59 1E2K TMC 2.41692
60 3DZD ADP 2.44565
61 2ZFI ADP 2.45902
62 3ZQ6 ADP ALF 2.46914
63 4LPS GDP 2.47934
64 4IXH IMP 2.49307
65 4P4T GDP 2.5
66 3FVQ ATP 2.50696
67 5KSZ GCP 2.53807
68 1IHU AF3 2.53807
69 1IHU ADP 2.53807
70 2GKS ADP 2.53807
71 4HSE ADP 2.53807
72 4IOK XPO 2.53807
73 4IOK ADP 2.53807
74 5TIV A3P 2.53807
75 1OYY AGS 2.53807
76 4I6G FAD 2.53807
77 2VWT PYR 2.62172
78 5BQ5 ADP BEF 2.6455
79 1CR1 TTP 2.7027
80 1F2U ATP 2.7027
81 3TMK T5A 2.77778
82 2QTV GNP 2.79188
83 2C9O ADP 2.79188
84 1F5N GNP 2.79188
85 1G41 ADP 2.79188
86 2NYA MGD 2.79188
87 1P3D ANP 2.79188
88 1Q19 APC 2.79188
89 1GQY ACP 2.79188
90 4TMK T5A 2.8169
91 3IQE F42 2.82686
92 4BQS K2Q 2.84091
93 4BQS ADP 2.84091
94 2ZR9 DTP 2.86533
95 3QXC ATP 2.89256
96 1SVM ATP 2.91777
97 2FFQ GSP 2.92398
98 1YZQ GNP 2.94118
99 1R2Q GNP 2.94118
100 3QKT ANP 2.94985
101 3MJH GTP 2.97619
102 1RRC ADP 2.99003
103 3Q72 GNP 3.01205
104 3LOO B4P 3.0137
105 5LLB 6YZ 3.04183
106 1OE0 TTP 3.04348
107 1GOT GDP 3.04569
108 5I0H ADP BEF 3.04569
109 4IHQ ADP 3.04569
110 4YS0 ADP 3.04569
111 5MZN ADP 3.04569
112 6C6O ENG 3.04569
113 1GOJ ADP 3.09859
114 2XTZ GSP 3.10734
115 3ZFD ANP 3.1339
116 6C0B MLI 3.20513
117 3VX3 ADP 3.22581
118 2FH5 GTP 3.24324
119 3ITJ CIT 3.25444
120 1P72 ADP 3.29341
121 1QF5 RPL 3.29949
122 1QF5 GDP 3.29949
123 4PFO ADP 3.29949
124 4PJ3 ANP 3.29949
125 2B8W ALF 5GP 3.35366
126 5KF9 ACO 3.35366
127 3GE7 AFQ 3.36788
128 1JJV ATP 3.39806
129 5XC5 GTP 3.40909
130 3FYH ADP 3.41615
131 5X40 ACP 3.42466
132 3B7G ANP 3.47826
133 3UIE ANP 3.5
134 4GOX A3P 3.51438
135 2JJK R15 3.5503
136 1W0J ADP 3.5533
137 2CK3 ANP 3.5533
138 1W0J ADP BEF 3.5533
139 2CK3 ADP 3.5533
140 3TBK ANP 3.5533
141 2ZPA ADP 3.5533
142 2ZE7 DST 3.55731
143 2ZE7 AMP 3.55731
144 5AHO TLA 3.57143
145 1KAO GDP 3.59281
146 3H86 AP5 3.64583
147 4XTR ATP 3.68664
148 4XTR ADP 3.68664
149 4XVU ATP 3.68664
150 1S3G AP5 3.68664
151 2Z5F A3P 3.69128
152 5UQW GDP 3.7037
153 4GBM A3P 3.71517
154 2ZPT A3P 3.72881
155 4WZ6 ATP 3.7931
156 1TU3 GNP 3.79747
157 4UXH T5A 3.80435
158 1T3D CYS 3.80623
159 1Z06 GNP 3.80711
160 2BCG GDP 3.80711
161 3HU3 AGS 3.80711
162 2BIF ANP 3.80711
163 2BIF SIN 3.80711
164 1R6B ADP 3.80711
165 3GDN FAD 3.80711
166 1JJ7 ADP 3.84615
167 5GVR LMR 3.84615
168 1FNN ADP 3.85604
169 1VKJ A3P 3.85965
170 1MR3 G3D 3.8674
171 5M04 GDP 3.88889
172 1I0B PEL 3.91566
173 3ZIA ATP 3.95683
174 3ZIA ADP 3.95683
175 2QG6 NMN 4.0201
176 2FAH GDP 4.06091
177 3DC4 ADP 4.06091
178 2AWN ADP 4.06091
179 2FSH ANP 4.06091
180 1QHG ATP 4.06091
181 5WRI A3P 4.0625
182 4AG5 ADP 4.08163
183 2Q2Y ADP 4.08719
184 2Q2Y MKR 4.08719
185 3QF7 ANP 4.10959
186 1ION ADP 4.11523
187 4ITM ATP 4.12698
188 3BOS CDP 4.13223
189 3Q85 GNP 4.14201
190 1ZUI SKM 4.16667
191 2GDJ ANP 4.16667
192 5E5U MLI 4.16667
193 1DMH LIO 4.18006
194 4HDO GNP 4.19162
195 6AIC AMP 4.20561
196 1O3Y GTP 4.21687
197 1J2J GTP 4.21687
198 1G3Q ADP 4.21941
199 2J0V GDP 4.24528
200 3QBT GNP 4.28571
201 5WRJ A3P 4.29043
202 5EP2 AZU 4.29688
203 4ZG4 VO4 ADP 4.31472
204 4X8O AP5 4.31472
205 1VM6 NAD 4.31472
206 4KOT CE3 4.32099
207 3RWO GDP 4.32432
208 5L3V GDP 4.34783
209 5L3S GNP 4.36242
210 2CHG ANP 4.42478
211 1RYH GNP 4.4335
212 4PX9 ADP 4.45205
213 2GCN GDP 4.47761
214 2GCO GNP 4.47761
215 4U00 ADP 4.5082
216 5HGZ ACO 4.52675
217 1XMV ADP 4.56853
218 1OS1 PYR 4.56853
219 1OS1 ATP 4.56853
220 4NON GDP 4.61538
221 4KBF AMP 4.65753
222 4FRZ ADP 4.66321
223 1Q20 PLO 4.68227
224 1Q20 A3P 4.68227
225 1Z08 GNP 4.70588
226 1J99 AND 4.77816
227 2A5F GTP 4.82234
228 1NY5 ADP 4.82234
229 1X8J A3P 4.82234
230 2V3V MGD 4.82234
231 1VG8 GNP 4.83092
232 1VG0 GDP 4.83092
233 3COB ADP 4.87805
234 2JAQ DCP 4.87805
235 1DAK ADP 4.91071
236 1DAK DPU 4.91071
237 3JVH HHV 4.91803
238 1O94 ADP 4.92424
239 2IYL GDP 4.92958
240 1KY3 GDP 4.94506
241 2W58 ADP 4.9505
242 1RE0 GDP 4.97738
243 5XKT GNP 5
244 4Q1A UDP 5
245 4Q1A 2XZ 5
246 4LJ9 ACP 5.01475
247 4M9Q GNP 5.07614
248 2ZEJ GDP 5.07614
249 1LVK MNT BEF 5.07614
250 1W5T ANP 5.07614
251 1W5T ADP 5.07614
252 3FB4 AP5 5.09259
253 4TTQ ATP 5.11628
254 3KJI ADP 5.11811
255 1KO8 6PG 5.14286
256 1H65 GDP 5.18518
257 2O0J ADP 5.19481
258 2D2F ADP 5.2
259 4R3L COA 5.20231
260 5KSP GDP 5.26316
261 5KUT GDP 5.29101
262 1KUV CA5 5.31401
263 2NCD ADP 5.32995
264 4R43 GDP 5.32995
265 5BN3 ADP 5.32995
266 4IDN GNP 5.32995
267 3BD9 A3P 5.35714
268 1IN4 ADP 5.38922
269 1VG9 GDP 5.40541
270 1VG1 GDP 5.40541
271 1UKZ ADP 5.41872
272 1CJW COT 5.42169
273 1T5C ADP 5.44413
274 1XP8 AGS 5.46448
275 5HH0 COA 5.5
276 5U32 GDP 5.50847
277 4MKG AP5 5.52995
278 1L2T ATP 5.53191
279 3T1O GDP 5.55556
280 1UJ2 ADP 5.55556
281 1UJ2 C5P 5.55556
282 1WF3 GNP 5.58376
283 1SVK ALF GDP 5.58376
284 6CRK GDP 5.58376
285 1GP2 GDP 5.58376
286 5KDO GDP 5.58376
287 3BFX A3P 5.58376
288 6BSX GDP 5.61798
289 6BSX E7S 5.61798
290 3REF GDP 5.6701
291 5Z2M GTP 5.68182
292 1YRB GDP 5.72519
293 2HF9 GSP 5.75221
294 6FA4 GNP 5.78035
295 2RGX AP5 5.82524
296 2BEK ATP 5.83658
297 2IXE ATP 5.83756
298 1G3M A3P 5.83756
299 1G3M PCQ 5.83756
300 3MGB PAP 5.83756
301 1IWE IMP 5.9081
302 2BME GNP 5.91398
303 1YZN GNP 5.94595
304 1BO4 COA 5.95238
305 2CDN ADP 5.97015
306 2QQ0 THM 5.97826
307 2QQ0 ANP 5.97826
308 2QQ0 TMP 5.97826
309 2QQ0 ADP 5.97826
310 4MKF AP5 5.99078
311 1BH2 GSP 6.03175
312 3FWY ADP 6.05096
313 1TQ4 GDP 6.05327
314 4OI4 ATP 6.08696
315 4WZA ADP 6.09137
316 4WZA ACP 6.09137
317 5I34 GDP 6.09137
318 3RC3 ANP 6.09137
319 3DKP ADP 6.12245
320 5ZBR ANP 6.13333
321 3IUY AMP 6.14035
322 4U5X GNP 6.17978
323 1M2O GNP 6.31579
324 1FP6 ADP 6.34518
325 1X6V ADP 6.34518
326 1Z6T ADP 6.34518
327 4IEE AGS 6.34518
328 2PL3 ADP 6.35593
329 4K81 GTP 6.43275
330 4QM7 GTP 6.43275
331 3EFS BTN 6.43777
332 4NU0 AP5 6.45161
333 4V0K GDP 6.50888
334 6D5J GNP 6.58683
335 6D5E GNP 6.58683
336 6D59 GNP 6.58683
337 6BVL GNP 6.58683
338 6D56 GNP 6.58683
339 6BVJ GNP 6.58683
340 6D5L GNP 6.58683
341 6D55 GNP 6.58683
342 6BVI GNP 6.58683
343 6D5G GNP 6.58683
344 6BVK GNP 6.58683
345 6D5H GNP 6.58683
346 6D5V GNP 6.58683
347 6BVM GNP 6.58683
348 6D5M GNP 6.58683
349 1GXU 2HP 6.59341
350 2VOS ADP 6.59898
351 1CLU DBG 6.62651
352 3KUD GDP 6.62651
353 3DDC GNP 6.62651
354 1WQ1 GDP 6.62651
355 1NVV GNP 6.62651
356 3H4S ADP 6.66667
357 1JI0 ATP 6.66667
358 4WOP CTP 6.66667
359 2OG2 MLI 6.68524
360 2VB6 ADP BEF 6.71141
361 2C5L GTP 6.83761
362 2Y65 ADP 6.84932
363 3AB3 GDP 6.85279
364 3CX8 GSP 6.85279
365 1RJ9 GCP 6.85279
366 1F9V ADP 6.85279
367 1S9D GDP 6.89655
368 5O2T GSP 6.95187
369 2GJ8 ALF GDP 6.97674
370 2XT3 ADP 6.97674
371 5UIV ADP 7.04846
372 5ZB0 TYD 7.07071
373 5ZB0 ADP 7.07071
374 1OXV ANP 7.08215
375 2RCN GDP 7.1066
376 3P4X ADP 7.1066
377 4QOS ADP 7.1066
378 5BYK A3P 7.1066
379 5BYK OAQ 7.1066
380 3WQT ANP 7.1066
381 1FZQ GDP 7.18232
382 6GAS FAD 7.25076
383 4LC1 GDP 7.4184
384 4D81 ADP 7.42049
385 3RLF ANP 7.43243
386 6CE2 SVR 7.43802
387 1ZJ6 G3D 7.48663
388 2D7D ADP 7.5
389 5IRC GDP 7.52688
390 2W2X GSP 7.56757
391 3MD0 GDP 7.60563
392 1KMQ GNP 7.6087
393 3E70 GDP 7.62195
394 1Z83 AP5 7.65306
395 3NC9 TR3 7.66773
396 1YVD GNP 7.69231
397 1PVN MZP 7.71277
398 2DPM SAM 7.74648
399 2HV8 GTP 7.8125
400 2IS6 ADP 7.86802
401 3TK1 GDP 7.87879
402 1TX4 ALF GDP 7.9096
403 5OCG GNP 7.93651
404 3B9Q MLI 7.94702
405 1BG2 ADP 8
406 1B0U ATP 8.01527
407 4GN8 ASO 8.02676
408 1AQU A3P 8.08081
409 1YQT ADP 8.12183
410 5YV5 ADP 8.12183
411 1FQK GDP 8.16327
412 5L3R GCP 8.19113
413 6CS8 F9Y 8.25082
414 1GWN GTP 8.29268
415 5O74 GDP 8.33333
416 1DS6 GDP 8.33333
417 1I4D GDP 8.33333
418 1E96 GTP 8.37438
419 3M1I GTP 8.37696
420 2KIN ADP 8.40336
421 4C4P GNP 8.41121
422 1PUJ GNP 8.51064
423 4HI0 GDP 8.54271
424 3SBD GNP 8.55615
425 2OFW ADX 8.65385
426 1Z0K GTP 8.72093
427 1T8U A3P 8.82353
428 1T8U UAP SGN IDS SGN 8.82353
429 3A4M ADP 8.84615
430 4DCT GDP 8.88325
431 1S8F GDP 8.88325
432 2GMV UN8 8.88325
433 2GMV PEP 8.88325
434 1NHX FTB 8.88325
435 1NHX PEP 8.88325
436 1YZG GDP 8.93855
437 2XTN GTP 8.97436
438 2FJU GSP 8.98876
439 5NM7 GLY 9.02256
440 3B5J 12D 9.0535
441 1R4A GNP 9.09091
442 1LVG ADP 9.09091
443 2V7Q ATP 9.09091
444 1HE1 GDP 9.09091
445 2V7Q ADP 9.09091
446 4GDX GLU 9.23077
447 6B8B ADP 9.23695
448 1M7B GTP 9.23913
449 4NE2 SH2 9.28144
450 4NE2 ADP 9.28144
451 2GK6 ADP 9.39086
452 2QEN ADP 9.42857
453 3IIJ ADP 9.44444
454 2PEZ DAT 9.49721
455 2PEZ GGZ 9.49721
456 3BFV ADP 9.5941
457 1B7T ADP 9.61539
458 6DVH FMN 9.64467
459 1KK8 BEF ADP 9.74026
460 4BFW ZVW 9.74843
461 1OFH ADP 9.77011
462 4DID GDP 9.84456
463 3KTA AP5 9.89011
464 4ZDJ UTP 9.89848
465 1NJF AGS 10
466 1NJF ADP 10
467 4BAS GNP 10.0503
468 1SQ5 ADP 10.0649
469 5CK5 GDP 10.1266
470 1NF3 GNP 10.2564
471 5UPK GNP 10.2703
472 4TL6 ANP 10.2767
473 1D2N ANP 10.2941
474 1QF9 C5P 10.3093
475 1QF9 ADP 10.3093
476 1QF9 ALF 10.3093
477 5HPY GDP 10.3448
478 1ZIN AP5 10.4061
479 2ZJ5 ADP 10.4061
480 3GJ8 GDP 10.4072
481 3GJ5 GDP 10.4072
482 3GJ3 GDP 10.4072
483 3GJ0 GDP 10.4072
484 3GJ4 GDP 10.4072
485 2CJW GDP 10.4167
486 1XEX ATP 10.4396
487 1A4R GDP 10.4712
488 1A4R GNH 10.4712
489 2NGR GDP 10.4712
490 1GRN GDP 10.4712
491 4ITR GDP 10.4712
492 2UZI GTP 10.5769
493 5BXQ GDP 10.6481
494 1IBR GNP 10.6481
495 2A9K GDP 10.6952
496 4XTX 590 10.7407
497 1Z4O GL1 10.8597
498 4HUT ATP 10.9948
499 4H6U ACO 11
500 5N69 ADP 11.0553
501 4H1V GNP 11.1111
502 6AU6 GDP 11.1675
503 5Y6N ADP 11.1675
504 6B4K ANP 11.1675
505 3GJ7 GDP 11.2245
506 1ZC3 GNP 11.4286
507 2QZ4 ADP 11.4504
508 5EXT ADP 11.5385
509 5WLB GNP 11.7647
510 3T12 GDP ALF 11.7647
511 4DDY DN6 11.7871
512 1M7G AV2 11.8483
513 1M7G ADX 11.8483
514 1M7G ADP 11.8483
515 1U8Z GDP 11.9048
516 2YOH WMJ 11.9048
517 1OW3 GDP 11.9171
518 1QHH ATP 11.976
519 2A5J GDP 12.0419
520 5Z69 AGS 12.0968
521 2CE7 ADP 12.1827
522 2WIC GNP 12.3596
523 4D0N GDP 12.4324
524 1CS4 GSP 12.6904
525 3ZL8 ADP 12.6904
526 1G6H ADP 12.8405
527 4HAT GNP 12.8571
528 1WA5 GTP 13.0682
529 1Z2A GDP 13.0952
530 1Z0A GDP 13.2184
531 1W7J ADP BEF 13.245
532 2ORV 4TA 13.2479
533 6DEF GCP 13.2992
534 1SVI GDP 13.3333
535 4QRH 0O2 13.3333
536 2HT6 GDP 13.4518
537 4NCN GTP 13.4518
538 6C90 ADP 13.4615
539 1AKY AP5 13.6364
540 3T5G GDP 13.8158
541 2VBQ BSJ 13.9394
542 5TB5 GDP 14
543 5TAR GDP 14.1892
544 1XX6 ADP 14.6597
545 3RAB GNP 14.7929
546 1G16 GDP 15.2941
547 5UWQ GNP 15.3846
548 5UWP GNP 15.3846
549 5UWU GNP 15.3846
550 5UWR GNP 15.3846
551 5UWJ GNP 15.3846
552 5UWI GNP 15.3846
553 6CIT GNP 15.3846
554 5UWT GNP 15.3846
555 5UWH GNP 15.3846
556 5UWW GNP 15.3846
557 5UWO GNP 15.3846
558 5UWS GNP 15.3846
559 5DI9 GNP 15.3846
560 1G7S GDP 15.4822
561 1DAR GDP 15.4822
562 3EC1 GDP 15.4822
563 2ODE ALF GDP 15.6028
564 4YMU ATP 15.8333
565 1W4R TTP 15.8974
566 4B47 GDP 15.978
567 4KVX ACO 16.0256
568 1F6B GDP 16.1616
569 2WHX ADP 16.2437
570 2JLR ANP 16.2437
571 1UPT GTP 16.6667
572 2OM2 GDP 16.6667
573 3A1S GDP 17.0543
574 1CXZ GSP 17.4419
575 3W5J GDP 17.5127
576 1KSH GDP 18.2796
577 1NRJ GTP 18.3486
578 3BC1 GNP 18.4615
579 1NN5 2DT 18.6047
580 1NN5 ANP 18.6047
581 4CVN ADP 18.8482
582 2ZFZ ARG 18.9873
583 1MKY GDP 19.5431
584 1ZD9 GDP 19.6809
585 4R98 GNH 19.9262
586 1GUA GNP 21.5569
587 1LFD GNP 21.8391
588 1Z0J GTP 22.0339
589 1X1R GDP 23.5955
590 6G14 G4P 24.3655
591 2WJG GDP 26.0638
592 3PQC GDP 26.1538
593 3CH5 GDP 28.8462
594 2WJH GDP 29.5181
595 2WJH FLC 29.5181
596 5FG3 GDP 29.6954
597 1FQJ GDP 30.9524
598 5DIF GNP 31.5789
599 5YT0 GDP 31.5934
600 4RD0 GDP 35.7868
601 2QN6 GDP 36.0406
602 1KK1 GNP 42.3858
603 1Y3A GDP 50
Pocket No.: 2; Query (leader) PDB : 3U6B; Ligand: GDP; Similar sites found with APoc: 16
This union binding pocket(no: 2) in the query (biounit: 3u6b.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 1BXK NAD 2.53521
2 5YGE ACO 3.44828
3 2B4D COA 3.50877
4 1ZRH A3P 3.64964
5 1RJW ETF 3.83481
6 2YY7 NAD 4.48718
7 1DL5 SAH 5.99369
8 4NSQ COA 7.36842
9 1S7N COA 7.69231
10 1CM0 COA 8.33333
11 1V3S ATP 8.62069
12 1W78 ADP 9.39086
13 4YRY FAD 10.1523
14 2JDC CAO 10.274
15 5H4S RAM 13.7324
16 5LS7 ACO 17.6471
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