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Receptor
PDB id Resolution Class Description Source Keywords
3T34 2.41 Å NON-ENZYME: OTHER ARABIDOPSIS THALIANA DYNAMIN-RELATED PROTEIN 1A (ATDRP1A) IN PREFISSION STATE ARABIDOPSIS THALIANA DYNAMIN-LIKE PROTEIN 1A GTPASE MEMBRANE FISSION MOTOR PRO
Ref.: STRUCTURAL BASIS FOR MECHANOCHEMICAL ROLE OF ARABID THALIANA DYNAMIN-RELATED PROTEIN IN MEMBRANE FISSIO J MOL CELL BIOL V. 3 378 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ALF A:1001;
B:1001;
Invalid;
Invalid;
none;
none;
submit data
102.975 Al F4 F[Al-...
GDP A:1000;
B:1000;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:1002;
B:1002;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
NA A:1003;
B:1003;
Part of Protein;
Part of Protein;
none;
none;
submit data
22.99 Na [Na+]
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3T34 2.41 Å NON-ENZYME: OTHER ARABIDOPSIS THALIANA DYNAMIN-RELATED PROTEIN 1A (ATDRP1A) IN PREFISSION STATE ARABIDOPSIS THALIANA DYNAMIN-LIKE PROTEIN 1A GTPASE MEMBRANE FISSION MOTOR PRO
Ref.: STRUCTURAL BASIS FOR MECHANOCHEMICAL ROLE OF ARABID THALIANA DYNAMIN-RELATED PROTEIN IN MEMBRANE FISSIO J MOL CELL BIOL V. 3 378 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3T34 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3T34 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 3T34 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 2X2F - GDP ALF n/a n/a
3 5D3Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 3ZYC - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
5 2X2E - GDP ALF n/a n/a
6 6DEF - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
7 6DI7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 4P4T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 4H1V - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
10 4H1U - FLC C6 H5 O7 C(C(=O)[O-....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3T34; Ligand: GDP; Similar sites found with APoc: 542
This union binding pocket(no: 1) in the query (biounit: 3t34.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 3DKP ADP None
2 1PTR PRB None
3 1DKU AP2 0.946372
4 3FWY ADP 0.955414
5 2HT6 GDP 1.14943
6 6E1Q CFA 1.38889
7 2VWT PYR 1.49813
8 1Y3A GDP 1.51976
9 2ZPA ADP 1.66667
10 3CV2 OXL 1.66667
11 2GWH A3P 1.67785
12 1T5C ADP 1.7192
13 1MFI FHC 1.75439
14 2XOC ADE 1.91571
15 4AG5 ADP 1.94444
16 2IS6 ADP 1.94444
17 1IHU AF3 1.94444
18 1IHU ADP 1.94444
19 2ZWS PLM 1.94444
20 1X6V ADP 1.94444
21 6AC9 ANP 1.94444
22 1OBD AMP 1.96078
23 1IZC PYR 2.0649
24 5JDI 6JO 2.08333
25 3NOJ PYR 2.10084
26 2ZFI ADP 2.18579
27 1D2N ANP 2.20588
28 1KK1 GNP 2.22222
29 1QF5 GDP 2.22222
30 1QF5 RPL 2.22222
31 3P4X ADP 2.22222
32 6C90 ADP 2.22222
33 2FAH GDP 2.22222
34 5HR5 ADP 2.22222
35 4B1X LAB 2.22222
36 4TVD BGC 2.22222
37 1OS1 PYR 2.22222
38 1OS1 ATP 2.22222
39 5YEE LAB 2.22222
40 1XMV ADP 2.24719
41 3VX3 ADP 2.41935
42 1VKJ A3P 2.45614
43 1SKQ GDP 2.5
44 1XKV ATP 2.5
45 4YS0 ADP 2.5
46 2C9O ADP 2.5
47 5WRI A3P 2.5
48 5ZB0 TYD 2.52525
49 5ZB0 ADP 2.52525
50 1QXA GLY GLY GLY 2.55319
51 4ZNL BEF ADP 2.55474
52 3WBZ ATP 2.58303
53 5NM7 GLY 2.63158
54 5WRJ A3P 2.64026
55 1CR1 TTP 2.7027
56 3QVV A3P 2.71186
57 4ZG4 VO4 ADP 2.74869
58 5TSH ADP 2.77778
59 5TSH ANP 2.77778
60 2GK6 ADP 2.77778
61 4IEE AGS 2.77778
62 6B4K ANP 2.77778
63 1NY5 ADP 2.77778
64 1FNN ADP 2.77778
65 2D2F ADP 2.8
66 2J0V GDP 2.83019
67 2A5F GTP 2.85714
68 2PL3 ADP 2.9661
69 3Q72 GNP 3.01205
70 5I0H ADP BEF 3.05556
71 3HDY GDU 3.05556
72 3HDY FAD 3.05556
73 3HDY FDA 3.05556
74 3FVQ ATP 3.06407
75 1FP6 ADP 3.11419
76 1DAK DPU 3.125
77 1DAK ADP 3.125
78 4K30 NLG 3.125
79 4GOX A3P 3.19489
80 5AHO TLA 3.27381
81 2WKQ GTP 3.31325
82 3EC1 GDP 3.33333
83 1DAR GDP 3.33333
84 1JI0 ATP 3.33333
85 2WHX ADP 3.33333
86 1Z6T ADP 3.33333
87 2FSH ANP 3.33333
88 1QHG ATP 3.33333
89 1YTM ATP 3.33333
90 4OI4 ATP 3.33333
91 1G41 ADP 3.33333
92 1SVM ATP 3.33333
93 5KDO GDP 3.35196
94 2RCN GDP 3.35196
95 2OFW ADX 3.36538
96 1SVK ALF GDP 3.39943
97 2VVG ADP 3.42857
98 4LJ9 ACP 3.53982
99 1NJF ADP 3.6
100 1NJF AGS 3.6
101 5FG3 GDP 3.61111
102 1D2E GDP 3.61111
103 5U97 PIT 3.61111
104 5ZBR ANP 3.61111
105 1Q19 SSC 3.61111
106 1E2K TMC 3.62538
107 1AKY AP5 3.63636
108 2CJW GDP 3.64583
109 1OXV ANP 3.68272
110 2Z5F A3P 3.69128
111 5BQ5 ADP BEF 3.7037
112 3BFX A3P 3.71622
113 4QOS ADP 3.77358
114 4DDY DN6 3.80228
115 2QQ0 ANP 3.80435
116 2QQ0 ADP 3.80435
117 2QQ0 TMP 3.80435
118 1BH2 GSP 3.80952
119 1JJ7 ADP 3.84615
120 1KY3 GDP 3.84615
121 4FCW ADP 3.85852
122 3H4S ADP 3.88889
123 4FRZ ADP 3.88889
124 1YQT ADP 3.88889
125 1F5N GNP 3.88889
126 5LB3 ADP 3.88889
127 5Z69 AGS 3.88889
128 4PJ3 ANP 3.88889
129 2PEZ DAT 3.91061
130 2PEZ GGZ 3.91061
131 3NHB ADP 3.92157
132 4KBA 1QM 3.92749
133 3IUY AMP 3.94737
134 2W58 ADP 3.9604
135 4WOP CTP 4
136 1F6B GDP 4.0404
137 5F1V 3VN 4.0404
138 3MGB PAP 4.07523
139 4QM7 GTP 4.09357
140 1TDF NAP 4.11392
141 2WIC GNP 4.11985
142 4NU0 AP5 4.14747
143 1ZIN AP5 4.14747
144 2IYL GDP 4.16667
145 4DCT GDP 4.16667
146 4RD0 GDP 4.16667
147 2DPY ADP 4.16667
148 1W0J ADP 4.16667
149 4HSE ADP 4.16667
150 4PFO ADP 4.16667
151 2JLR ANP 4.16667
152 1W0J ADP BEF 4.16667
153 1XX6 ADP 4.18848
154 3QDY A2G GAL 4.1958
155 4X8O AP5 4.20561
156 5IOK ACE GLN THR ALA ARG KCR SER THR 4.22535
157 2B8W ALF 5GP 4.26829
158 5GVR LMR 4.2735
159 1RRC ADP 4.31894
160 1TAD ALF 4.32099
161 1TAD GDP 4.32099
162 1VG8 GNP 4.34783
163 5O74 GDP 4.44444
164 2Y65 ADP 4.44444
165 4B47 GDP 4.44444
166 2ZJ5 ADP 4.44444
167 4TQK NAG 4.44444
168 3IIJ ADP 4.44444
169 4PX9 ADP 4.45205
170 1P72 ADP 4.49102
171 5XKT GNP 4.5
172 1S8F GDP 4.51977
173 5HCN GCP 4.5977
174 4U60 SIA GAL NGA 4.64286
175 4U60 SIA 4.64286
176 4U60 SIA GAL BGC NGA GAL 4.64286
177 1AQU A3P 4.7138
178 3COB ADP 4.72222
179 5MB4 NAG 4.72222
180 1R6B ADP 4.72222
181 2BO4 FLC 4.72222
182 1M7G AV2 4.73934
183 1M7G ADX 4.73934
184 1M7G ADP 4.73934
185 1FQK GDP 4.7619
186 1FQJ GDP 4.7619
187 1H65 GDP 4.81482
188 3BER AMP 4.81928
189 1JJV ATP 4.85437
190 1VG1 GDP 4.86486
191 2CHG ANP 4.86726
192 2ZR9 DTP 4.87106
193 1D5C GDP 4.93827
194 6AU6 GDP 5
195 5KSZ GCP 5
196 4YMU ATP 5
197 2J5V PCA 5
198 1VHT BA3 5.04587
199 5Z2M GTP 5.11364
200 1KO8 6PG 5.14286
201 1UJ2 ADP 5.15873
202 1UJ2 C5P 5.15873
203 4WZ6 ATP 5.17241
204 1SQ5 ADP 5.19481
205 1BG2 ADP 5.23077
206 2O0J ADP 5.27778
207 5YV5 ADP 5.27778
208 2D7D ADP 5.27778
209 1YXM ADE 5.28053
210 4D81 ADP 5.30035
211 4U00 ADP 5.32787
212 4DYG NAG NAG NAG NAG 5.32787
213 4NAE 1GP 5.33333
214 3DEF GDP 5.34351
215 4Q1A UDP 5.35714
216 4Q1A 2XZ 5.35714
217 1JXN MFU 5.3719
218 5CK5 GDP 5.37975
219 1RYH GNP 5.41872
220 2BEK ATP 5.44747
221 2F9L GDP 5.52764
222 5N69 ADP 5.52764
223 2XTN GTP 5.55556
224 1V8K ANP 5.55556
225 5BN3 ADP 5.55556
226 1GQY ACP 5.55556
227 4GBM A3P 5.57276
228 1WF3 GNP 5.64784
229 5UIV ADP 5.72687
230 1DS6 GDP 5.72917
231 1B7T ADP 5.76923
232 1I4D GDP 5.80357
233 3A1S GDP 5.81395
234 4NCN GTP 5.83333
235 1IWE IMP 5.83333
236 1G7S GDP 5.83333
237 4ZDJ UTP 5.83333
238 3ZQ6 ADP ALF 5.8642
239 3GJ3 GDP 5.88235
240 3GJ7 GDP 5.88235
241 3GJ0 GDP 5.88235
242 3GJ4 GDP 5.88235
243 3GJ5 GDP 5.88235
244 3SBD GNP 5.88235
245 3GJ8 GDP 5.88235
246 1G3Q ADP 5.90717
247 1MH1 GNP 5.91398
248 1GOJ ADP 5.91549
249 3CH5 GDP 6.01852
250 5BXQ GDP 6.01852
251 1IBR GNP 6.01852
252 4TTQ ATP 6.04651
253 1MR3 G3D 6.07735
254 1D8T GDP 6.10687
255 1YRB GDP 6.10687
256 2BVN GNP 6.10687
257 2GKS ADP 6.11111
258 4WZA ADP 6.11111
259 4WZA ACP 6.11111
260 1OYY AGS 6.11111
261 3A4M ADP 6.15385
262 2FJU GSP 6.17978
263 4LPS GDP 6.19835
264 1EXF GLY 6.19835
265 3CX8 GSP 6.21302
266 1HE1 GDP 6.25
267 1G6O ADP 6.36364
268 5Y6N ADP 6.38889
269 2XAU ADP 6.38889
270 2HV8 GTP 6.39535
271 1ZJ6 G3D 6.41711
272 3TMK T5A 6.48148
273 1B0U ATP 6.48855
274 3UIE ANP 6.5
275 3B5J 12D 6.58436
276 2D7C GTP 6.58683
277 1IN4 ADP 6.58683
278 1GXU 2HP 6.59341
279 3BOS CDP 6.61157
280 1FZQ GDP 6.62983
281 1Z83 AP5 6.63265
282 4IHQ ADP 6.66667
283 4R43 GDP 6.66667
284 1NF3 GNP 6.66667
285 4IOK ADP 6.66667
286 1YZG GDP 6.70391
287 4DID GDP 6.73575
288 4U5X GNP 6.74157
289 4ITR GDP 6.80628
290 1A4R GNH 6.80628
291 1A4R GDP 6.80628
292 2NGR GDP 6.80628
293 1GWN GTP 6.82927
294 5KUT GDP 6.87831
295 5OCG GNP 6.87831
296 5UQW GDP 6.87831
297 4MKF AP5 6.91244
298 1ZD9 GDP 6.91489
299 5EXT ADP 6.92308
300 1XP8 AGS 6.94444
301 2CE7 ADP 6.94444
302 3TK1 GDP 6.9697
303 5TB5 GDP 7.02703
304 5TAR GDP 7.02703
305 4M9Q GNP 7.04846
306 1Z08 GNP 7.05882
307 2ZEJ GDP 7.06522
308 4KFU ACP 7.07547
309 4R2I ANP 7.14286
310 2YOH WMJ 7.14286
311 2HCJ GDP 7.16418
312 1GUA GNP 7.18563
313 2GDJ ANP 7.19697
314 3WXM GTP 7.22222
315 5MZN ADP 7.22222
316 1O3Y GTP 7.22892
317 1J2J GTP 7.22892
318 4JLS 3ZE 7.23684
319 1OW3 GDP 7.25389
320 1RE0 GDP 7.31707
321 1S9D GDP 7.31707
322 1WA5 GTP 7.38636
323 5XC5 GTP 7.38636
324 1GRN GDP 7.38916
325 3TBK ANP 7.5
326 1LVK MNT BEF 7.5
327 6FA4 GNP 7.51445
328 5IRC GDP 7.52688
329 2QX0 PH2 7.54717
330 2KIN ADP 7.56302
331 4D0N GDP 7.56757
332 5HPY GDP 7.56757
333 4K81 GTP 7.60234
334 1M7B GTP 7.6087
335 1KMQ GNP 7.6087
336 3E3U NVC 7.61421
337 2C5L GTP 7.69231
338 5O2T GSP 7.69231
339 3KTA AP5 7.69231
340 1QF9 ALF 7.73196
341 1QF9 C5P 7.73196
342 1QF9 ADP 7.73196
343 1TQ4 GDP 7.77778
344 1P9B GDP 7.77778
345 1KAO GDP 7.78443
346 4HDO GNP 7.78443
347 6D5E GNP 7.78443
348 6D5G GNP 7.78443
349 6BVK GNP 7.78443
350 6BVJ GNP 7.78443
351 6BVL GNP 7.78443
352 6D5J GNP 7.78443
353 6D5H GNP 7.78443
354 6D5M GNP 7.78443
355 6BVI GNP 7.78443
356 6D55 GNP 7.78443
357 6D5V GNP 7.78443
358 6D5L GNP 7.78443
359 6BVM GNP 7.78443
360 6D56 GNP 7.78443
361 6D59 GNP 7.78443
362 3KUD GDP 7.83133
363 1WQ1 GDP 7.83133
364 1CLU DBG 7.83133
365 1NVV GNP 7.83133
366 1M2O GNP 7.89474
367 1TX4 ALF GDP 7.9096
368 1W7J ADP BEF 7.94702
369 2A9K GDP 8.02139
370 5E5U MLI 8.0402
371 2VB6 ADP BEF 8.05369
372 1VG9 GDP 8.05556
373 1VG0 GDP 8.05556
374 1LVG ADP 8.08081
375 3MD0 GDP 8.16901
376 2XTZ GSP 8.19209
377 1U0J ADP 8.2397
378 4V0K GDP 8.28402
379 4MKG AP5 8.29493
380 2C77 GNP 8.33333
381 3AB3 GDP 8.33333
382 2C78 GNP 8.33333
383 1RJ9 GCP 8.33333
384 5I34 GDP 8.33333
385 1UKZ ADP 8.37438
386 2A5J GDP 8.37696
387 1LFD GNP 8.38323
388 2QZ4 ADP 8.39695
389 4NON GDP 8.46154
390 2QEN ADP 8.57143
391 2QN6 GDP 8.60215
392 1KSH GDP 8.60215
393 5BVE 4VG 8.61111
394 1Z0A GDP 8.62069
395 4TL6 ANP 8.69565
396 3FB4 AP5 8.7963
397 1YZQ GNP 8.82353
398 1G16 GDP 8.82353
399 3RAB GNP 8.87574
400 5U32 GDP 8.8983
401 2OG2 MLI 8.91365
402 1U8Z GDP 8.92857
403 1Z0F GDP 8.93855
404 1G6H ADP 8.94942
405 4XTR ATP 9.03955
406 4XTR ADP 9.03955
407 4XVU ATP 9.03955
408 2WOJ ADP ALF 9.03955
409 3HY2 ATP 9.09091
410 1MKY GDP 9.16667
411 5ZXD ATP 9.16667
412 4IDN GNP 9.16667
413 3ITJ CIT 9.16667
414 1YZN GNP 9.18919
415 2HF9 GSP 9.29204
416 5MEX PAP 9.31677
417 3Q85 GNP 9.46746
418 5KSP GDP 9.47368
419 1PUJ GNP 9.57447
420 1S3G AP5 9.67742
421 4A4Z ANP 9.72222
422 1SVI GDP 9.74359
423 5UWP GNP 9.79021
424 5UWH GNP 9.79021
425 5UWO GNP 9.79021
426 5UWT GNP 9.79021
427 6CIT GNP 9.79021
428 5DHF GNP 9.79021
429 5UWS GNP 9.79021
430 5DIF GNP 9.79021
431 5UWI GNP 9.79021
432 5UWJ GNP 9.79021
433 5UWW GNP 9.79021
434 5DI9 GNP 9.79021
435 6CRK GDP 9.85915
436 1GP2 GDP 9.85915
437 1CS4 GSP 9.90566
438 2GCO GNP 9.95025
439 2GCN GDP 9.95025
440 2AWN ADP 10
441 1UPT GTP 10
442 4HAT GNP 10
443 1NRJ GTP 10.0917
444 3T12 GDP ALF 10.101
445 3T1O GDP 10.101
446 4CVN ADP 10.219
447 6AIC AMP 10.2804
448 1ION ADP 10.2881
449 5ZZB LAB 10.2941
450 1CXZ GSP 10.4651
451 3B9Q MLI 10.596
452 1ZC3 GNP 10.6195
453 1KK8 BEF ADP 10.7914
454 5M04 GDP 10.8333
455 4KBF AMP 10.9589
456 2XT3 ADP 11.0465
457 2NCD ADP 11.1111
458 2WJG GDP 11.1702
459 3DC4 ADP 11.6279
460 2BCG GDP 11.6505
461 1R4A GNP 11.7647
462 1EK0 GNP 11.7647
463 1QHH ATP 12.1739
464 2UZI GTP 12.2807
465 3BC1 GNP 12.3077
466 1GOT GDP 12.3288
467 3REF GDP 12.3711
468 1F9V ADP 12.3919
469 4LC1 GDP 12.4629
470 5UPK GNP 12.5
471 1G4U GDP 12.5
472 6CS8 F9Y 12.5413
473 1OIX GDP 12.5654
474 1OIV GDP 12.5654
475 6G14 G4P 12.585
476 2WJH FLC 12.6506
477 2WJH GDP 12.6506
478 2X7I CIT 12.6623
479 2ODE ALF GDP 12.766
480 1G7C 5GP 12.7778
481 1TU3 GNP 12.8655
482 3DDC GNP 12.8834
483 2W2X GSP 12.9032
484 2IXE ATP 12.9151
485 1X1R GDP 12.9213
486 1R2Q GNP 12.9412
487 1SL6 GAL NDG FUC 13.0435
488 3MJH GTP 13.0952
489 1Z06 GNP 13.2275
490 5AOG IAC 13.6808
491 3KJI ADP 13.7795
492 1E96 GTP 13.7931
493 2V7Q ADP 14
494 2CK3 ANP 14
495 2V7Q ATP 14
496 3ZFD ANP 14.7222
497 1YVD GNP 14.7929
498 3QBT GNP 15
499 2G77 GDP 15.1515
500 1Z0J GTP 15.2542
501 3T5G GDP 15.4696
502 3B7G ANP 15.6522
503 3M1I GTP 15.7068
504 6BSX GDP 15.7303
505 6BSX E7S 15.7303
506 5L3R GCP 15.9468
507 3E70 GDP 16.1585
508 3ZIA ADP 16.3934
509 3ZIA ATP 16.3934
510 4HI0 GDP 16.5829
511 5L3V GDP 16.7224
512 2CDN ADP 16.9154
513 2NU8 COA 17.0139
514 3BFV ADP 17.3432
515 4BQS K2Q 17.6136
516 4BQS ADP 17.6136
517 5L3W GDP 18.6275
518 4C4P GNP 18.6916
519 3DZD ADP 18.8889
520 5L3S GNP 19.2568
521 2OM2 GDP 19.4444
522 2GJ8 ALF GDP 20.3488
523 2QTV GNP 20.4082
524 3GUZ PAF 20.4545
525 5WLB GNP 20.5882
526 2BME GNP 20.9677
527 3PQC GDP 21.0256
528 3ZS9 ADP ALF 21.0526
529 2FH5 GTP 21.6216
530 1NN5 ANP 21.8605
531 1NN5 2DT 21.8605
532 1Z2A GDP 22.0238
533 1Z0K GTP 22.093
534 3RWO GDP 22.1622
535 2FFQ GSP 22.807
536 4R98 GNH 23.6162
537 4BAS GNP 25.1256
538 5UWR GNP 25.9259
539 5YT0 GDP 28.5714
540 5UWU GNP 30
541 5UWQ GNP 31.8182
542 3W5J GDP 35.2941
Pocket No.: 2; Query (leader) PDB : 3T34; Ligand: GDP; Similar sites found with APoc: 39
This union binding pocket(no: 2) in the query (biounit: 3t34.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 4WG0 CHD None
2 1G3M A3P 2.04082
3 1G3M PCQ 2.04082
4 4N14 WR7 2.2293
5 1MJT ITU 2.30548
6 6GAS FAD 2.41692
7 5ZI9 FLC 2.69231
8 1I0B PEL 2.71084
9 4USQ FAD 2.77778
10 3B8I OXL 2.78746
11 3DRW AMP 3.05556
12 4P4M D3T 3.05556
13 2NVK NAP 3.33333
14 1VMK GUN 3.61011
15 5Z5I XYP 3.61111
16 1W5T ADP 3.61111
17 2HK9 ATR 3.63636
18 1O8B ABF 3.65297
19 2QQ0 THM 3.80435
20 5WXU FLC 3.88889
21 5W4W 9WG 3.92749
22 2JCB ADP 4
23 3UZO PLP 4.46927
24 4NE2 SH2 4.49102
25 4NE2 ADP 4.49102
26 2RGX AP5 4.85437
27 4UP4 GAL NAG 5.27778
28 2I4I AMP 5.55556
29 3RC3 ANP 5.83333
30 1OFH ADP 6.12903
31 4CT7 TRP 6.2963
32 4IOK XPO 6.66667
33 1U3G ADP 7.93651
34 3B12 FAH 8.88158
35 1NST A3P 8.92308
36 1BO4 COA 8.92857
37 4M6T SAM 10.929
38 5LPG 71V 16.4634
39 2IDO TMP 18.0723
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