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Receptor
PDB id Resolution Class Description Source Keywords
3T1O 1.9 Å EC: 3.6.5.2 MGLA BOUND TO GDP THERMUS THERMOPHILUS G DOMAIN CONTAINING PROTEIN BACTERIAL GTPASE BACTERIAL POLMOTILITY POLE LOCALISATION ALPHA/BETA PROTEIN HYDROLASE
Ref.: STRUCTURAL ANALYSIS OF THE RAS-LIKE G PROTEIN MGLA COGNATE GAP MGLB AND IMPLICATIONS FOR BACTERIAL POL EMBO J. V. 30 4185 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:274;
B:274;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:197;
A:198;
A:199;
A:200;
B:197;
B:198;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
MPD A:5276;
Invalid;
none;
submit data
118.174 C6 H14 O2 C[C@@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3T1O 1.9 Å EC: 3.6.5.2 MGLA BOUND TO GDP THERMUS THERMOPHILUS G DOMAIN CONTAINING PROTEIN BACTERIAL GTPASE BACTERIAL POLMOTILITY POLE LOCALISATION ALPHA/BETA PROTEIN HYDROLASE
Ref.: STRUCTURAL ANALYSIS OF THE RAS-LIKE G PROTEIN MGLA COGNATE GAP MGLB AND IMPLICATIONS FOR BACTERIAL POL EMBO J. V. 30 4185 2011
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 17 families.
1 3T1O - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3T1V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3T1T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 10 families.
1 3T1O - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3T1V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3T1T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 3T1O - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3T1V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3T1T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3T1O; Ligand: GDP; Similar sites found with APoc: 687
This union binding pocket(no: 1) in the query (biounit: 3t1o.bio2) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 1Z2A GDP None
2 5HCN GCP None
3 2ZEJ GDP None
4 4MKF AP5 None
5 1CR1 TTP None
6 1VKJ A3P None
7 1BO4 COA None
8 5C2N NAG None
9 2A5J GDP 1.04712
10 1Z0F GDP 1.11732
11 1Z0A GDP 1.14943
12 3FKQ ATP 1.51515
13 5EXT ADP 1.51515
14 4OOE FOM 1.51515
15 1X8J A3P 1.51515
16 4JLV ADP 2.0202
17 4ZG4 VO4 ADP 2.0202
18 1P72 ADP 2.0202
19 1OE0 TTP 2.0202
20 3H86 AP5 2.08333
21 4ZNL BEF ADP 2.52525
22 4TTQ ATP 2.52525
23 4NU0 AP5 2.52525
24 2QG6 NMN 2.52525
25 3FVQ ATP 2.52525
26 5HR5 ADP 2.52525
27 4GBM A3P 2.52525
28 2ZPT A3P 2.52525
29 2R4V GSH 2.52525
30 2JJK R15 2.52525
31 1A4R GNH 2.6178
32 1A4R GDP 2.6178
33 5KSP GDP 2.63158
34 2RCN GDP 3.0303
35 1M7G AV2 3.0303
36 4KVA GTP 3.0303
37 4YDS ATP 3.0303
38 2OFW ADX 3.0303
39 3EWA ANP 3.0303
40 3UIE ANP 3.0303
41 1DAK ADP 3.0303
42 1DAK DPU 3.0303
43 5AK0 8V1 3.0303
44 3P4X ADP 3.0303
45 5Z69 AGS 3.0303
46 4IEE AGS 3.0303
47 2JLR ANP 3.0303
48 2J5V PCA 3.0303
49 2J5V RGP 3.0303
50 1M7G ADP 3.0303
51 1M7G ADX 3.0303
52 6GAQ FMN 3.24675
53 2PEZ DAT 3.35196
54 2PEZ GGZ 3.35196
55 1PUJ GNP 3.53535
56 1G7C 5GP 3.53535
57 1JJ7 ADP 3.53535
58 4KFU ACP 3.53535
59 2PZE ATP 3.53535
60 4WZ6 ATP 3.53535
61 1V8K ANP 3.53535
62 4Q1A 2XZ 3.53535
63 4Q1A UDP 3.53535
64 5KSZ GCP 3.53535
65 1R0X ATP 3.53535
66 3BFV ADP 3.53535
67 1SQ5 ADP 3.53535
68 2QZ4 ADP 3.53535
69 4RZ3 ADP 3.53535
70 2OZE AGS 3.53535
71 4NE2 SH2 3.53535
72 4NE2 ADP 3.53535
73 2XTN GTP 3.53535
74 1R6B ADP 3.53535
75 1G41 ADP 3.53535
76 1XP8 AGS 3.53535
77 2IXE ATP 3.53535
78 5WRI A3P 3.53535
79 3BFX A3P 3.53535
80 2ZE7 AMP 3.53535
81 2ZE7 DST 3.53535
82 2Z5F A3P 3.53535
83 4UTG ANP 3.53535
84 5NM7 GLY 3.53535
85 2XZ9 PYR 3.53535
86 2B8W ALF 5GP 3.53535
87 4URF 1PS 3.53535
88 1J99 AND 3.53535
89 4RHE FMN 3.53535
90 6ACS CIT 3.53535
91 1DKU AP2 3.53535
92 4TQK NAG 3.53535
93 1AQU A3P 3.53535
94 1E5D FMN 3.53535
95 3Q85 GNP 3.5503
96 1HTW ADP 3.79747
97 1XEX ATP 3.84615
98 3KTA AP5 3.84615
99 4BQS ADP 3.97727
100 4BQS K2Q 3.97727
101 2VVG ADP 4.0404
102 3COB ADP 4.0404
103 3ZQ6 ADP ALF 4.0404
104 6A20 ADP 4.0404
105 4V03 ADP 4.0404
106 1F9V ADP 4.0404
107 3DC4 ADP 4.0404
108 3BOS CDP 4.0404
109 2CE7 ADP 4.0404
110 4MKG AP5 4.0404
111 2Q2Y ADP 4.0404
112 4D81 ADP 4.0404
113 1S3G AP5 4.0404
114 2Q2Y MKR 4.0404
115 5ZBR ANP 4.0404
116 4FRZ ADP 4.0404
117 1LVK MNT BEF 4.0404
118 3DZD ADP 4.0404
119 2GDJ ANP 4.0404
120 5GVR LMR 4.0404
121 2XAU ADP 4.0404
122 3FYH ADP 4.0404
123 6H5E ANP 4.0404
124 4B16 NAG 4.0404
125 1Z83 AP5 4.08163
126 1YVD GNP 4.14201
127 1DS6 GDP 4.16667
128 1I4D GDP 4.16667
129 4CVN ADP 4.18848
130 4ITR GDP 4.18848
131 1XX6 ADP 4.18848
132 1MH1 GNP 4.30108
133 4PPF FLC 4.54545
134 2XT3 ADP 4.54545
135 1E96 GTP 4.54545
136 1HE1 GDP 4.54545
137 2ZR9 DTP 4.54545
138 3HU3 AGS 4.54545
139 2YOH WMJ 4.54545
140 1SVM ATP 4.54545
141 1XKV ATP 4.54545
142 4IDN GNP 4.54545
143 1OS1 PYR 4.54545
144 1OS1 ATP 4.54545
145 3QKT ANP 4.54545
146 2FNA ADP 4.54545
147 1Z6T ADP 4.54545
148 5I0H ADP BEF 4.54545
149 1HE1 AF3 4.54545
150 2ORV 4TA 4.54545
151 5X40 ACP 4.54545
152 1NST A3P 4.54545
153 6FAA ADP 4.54545
154 1K6M AGS 4.54545
155 1W4R TTP 4.61538
156 1G3Q ADP 4.64135
157 2QQ0 ANP 4.8913
158 2QQ0 THM 4.8913
159 2QQ0 ADP 4.8913
160 2QQ0 TMP 4.8913
161 3IIJ ADP 5
162 4LC1 GDP 5.05051
163 2KIN ADP 5.05051
164 3LRE ADP 5.05051
165 1YQT ADP 5.05051
166 1AKY AP5 5.05051
167 3KJI ADP 5.05051
168 2DPY ADP 5.05051
169 4QOS ADP 5.05051
170 6B8B ADP 5.05051
171 1W5T ADP 5.05051
172 1G3M PCQ 5.05051
173 1G3M A3P 5.05051
174 1W5T ANP 5.05051
175 5MEX PAP 5.05051
176 5MEX SZZ 5.05051
177 2VWT PYR 5.05051
178 5XC5 GTP 5.11364
179 1OFH ADP 5.17241
180 5LEF GTP 5.2356
181 1EK0 GNP 5.29412
182 1F2U ATP 5.40541
183 1Y63 ADP 5.43478
184 3WYA GDP 5.55556
185 4P3Y GDP 5.55556
186 3U6B GDP 5.55556
187 5W76 GDP 5.55556
188 3WY9 GDP 5.55556
189 5JBQ GDP 5.55556
190 3U6K GDP 5.55556
191 1D8T GDP 5.55556
192 5GOE GDP 5.55556
193 4G5G GDP 5.55556
194 2BVN GNP 5.55556
195 1TQ4 GDP 5.55556
196 3TK1 GDP 5.55556
197 2Y65 ADP 5.55556
198 4RD0 GDP 5.55556
199 5UPK GNP 5.55556
200 5ZXD ATP 5.55556
201 3FWY ADP 5.55556
202 5MVR ADP 5.55556
203 5L3W GDP 5.55556
204 2QEN ADP 5.55556
205 4FCW ADP 5.55556
206 5IFS ADP 5.55556
207 1YTM ATP 5.55556
208 5FHD ADP ALF 5.55556
209 5FTB ANP 5.55556
210 2RGX AP5 5.55556
211 5G41 AP5 5.55556
212 3QXC ATP 5.55556
213 2FAH GDP 5.55556
214 4LJ9 ACP 5.55556
215 1VHT BA3 5.55556
216 5Y6N ADP 5.55556
217 3B7G ANP 5.55556
218 5XDR ADP 5.55556
219 5E5U MLI 5.55556
220 2GMV UN8 5.55556
221 2GMV PEP 5.55556
222 1NHX FTB 5.55556
223 1NHX PEP 5.55556
224 3V0H I3P 5.55556
225 2CXG GLC GLC 5.55556
226 5LLB 6YZ 5.55556
227 4R2I ANP 5.55556
228 1RJW ETF 5.55556
229 5ZA2 NXL 5.55556
230 2W2X GSP 5.64516
231 3A4M ADP 5.76923
232 2ZTS ADP 5.9761
233 4J0Q GDP 6.06061
234 1TAD GDP 6.06061
235 1TAD ALF 6.06061
236 5W7Q GDP 6.06061
237 3MD0 GDP 6.06061
238 3AB3 GDP 6.06061
239 4PC3 GDP 6.06061
240 1T5C ADP 6.06061
241 1ZCB GDP 6.06061
242 5KUT GDP 6.06061
243 1IWE IMP 6.06061
244 2WMO GTP 6.06061
245 3CX8 GSP 6.06061
246 3NHB ADP 6.06061
247 6CS8 F9Y 6.06061
248 2ZFI ADP 6.06061
249 3TMK T5A 6.06061
250 4PX9 ADP 6.06061
251 2NCD ADP 6.06061
252 2PL3 ADP 6.06061
253 2GK6 ADP 6.06061
254 5YV5 ADP 6.06061
255 1U0J ADP 6.06061
256 3RC3 ANP 6.06061
257 5MZN ADP 6.06061
258 3MGB PAP 6.06061
259 4RGQ NDP 6.06061
260 4RGQ 13P 6.06061
261 5AHO TLA 6.06061
262 5UIV ADP 6.1674
263 4DID GDP 6.21762
264 5W75 GDP 6.56566
265 4DKX GDP 6.56566
266 4DCT GDP 6.56566
267 1BG2 ADP 6.56566
268 1GOJ ADP 6.56566
269 2W58 ADP 6.56566
270 1WDT GTP 6.56566
271 5U32 GDP 6.56566
272 3B5J 12D 6.56566
273 4LYA ATP 6.56566
274 5VHC BEF ADP 6.56566
275 1NJF ADP 6.56566
276 1OYY AGS 6.56566
277 1NJF AGS 6.56566
278 1H74 ADP 6.56566
279 3QVV 3QV 6.56566
280 3QVV A3P 6.56566
281 1I0B PEL 6.56566
282 3A1S GDP 6.58915
283 4WOP CTP 6.66667
284 3SBD GNP 6.95187
285 1LVG ADP 7.07071
286 1NN5 ANP 7.07071
287 1NN5 2DT 7.07071
288 3ZFD ANP 7.07071
289 1H65 GDP 7.07071
290 2BIF ANP 7.07071
291 2BIF SIN 7.07071
292 1G6H ADP 7.07071
293 1NY5 ADP 7.07071
294 5M7P ADP 7.07071
295 1FNN ADP 7.07071
296 5TIV A3P 7.07071
297 2ZPA ADP 7.07071
298 6GVZ CHO 7.07071
299 2D7D ADP 7.07071
300 1TL2 NDG 7.07071
301 2FSH ANP 7.07071
302 2WKQ GTP 7.57576
303 2GKS ADP 7.57576
304 3GJX GTP 7.57576
305 3ZIA ATP 7.57576
306 1XMV ADP 7.57576
307 1UJ2 ADP 7.57576
308 3ZIA ADP 7.57576
309 1UJ2 C5P 7.57576
310 3DKP ADP 7.57576
311 6B4K ANP 7.57576
312 5BYK A3P 7.57576
313 5BYK OAQ 7.57576
314 5ZB0 ADP 7.57576
315 5ZB0 TYD 7.57576
316 1Q0H FOM 7.57576
317 4XFR CIT 7.57576
318 2O0J ADP 7.57576
319 1QF9 ADP 7.73196
320 1QF9 C5P 7.73196
321 1QF9 ALF 7.73196
322 4YSX FAD 7.97872
323 2CBZ ATP 8.01688
324 5H7J GCP 8.08081
325 5YT0 GDP 8.08081
326 5M04 GDP 8.08081
327 5FG3 GDP 8.08081
328 5H7K GDP 8.08081
329 1D2E GDP 8.08081
330 2AWN ADP 8.08081
331 4WZA ACP 8.08081
332 4WZA ADP 8.08081
333 4XTR ATP 8.08081
334 4XVU ATP 8.08081
335 4XTR ADP 8.08081
336 1FP6 ADP 8.08081
337 5LB3 ADP 8.08081
338 3ZS9 ADP ALF 8.08081
339 2WOJ ADP ALF 8.08081
340 3ISN EDM 8.08081
341 3H4S ADP 8.14815
342 1UAD GNP 8.57143
343 1ZC3 GNP 8.57143
344 1KO8 6PG 8.57143
345 1WF3 GNP 8.58586
346 1OXV ANP 8.58586
347 5IRN ADP 8.58586
348 5BN3 ADP 8.58586
349 1IHU AF3 8.58586
350 1F5N GNP 8.58586
351 5H68 AGS 8.58586
352 1IHU ADP 8.58586
353 1B7T ADP 8.58586
354 2C9O ADP 8.58586
355 1KK8 BEF ADP 8.58586
356 2V2V V12 8.58586
357 4A4Z ANP 8.58586
358 1L2T ATP 8.58586
359 1QHG ATP 8.58586
360 2GWH A3P 8.58586
361 1NF3 GNP 8.59375
362 4UXH T5A 8.69565
363 4QM7 GTP 8.77193
364 3T5G GDP 8.83978
365 1U8Z GDP 8.92857
366 6BSX GDP 8.98876
367 6BSX E7S 8.98876
368 5BQ5 ADP BEF 8.99471
369 3CNL GNP 9.09091
370 6G14 G4P 9.09091
371 4P4T GDP 9.09091
372 5L3V GDP 9.09091
373 3FB4 AP5 9.09091
374 5I34 GDP 9.09091
375 5L3S GNP 9.09091
376 1ZIN AP5 9.09091
377 2CHG ANP 9.09091
378 4XGU ADP 9.09091
379 4WEI GLC GAL 9.09091
380 1T8U UAP SGN IDS SGN 9.09091
381 1P9B GDP 9.27602
382 1ZUI SKM 9.52381
383 5N69 ADP 9.54774
384 1G4U GDP 9.59596
385 2CDN ADP 9.59596
386 4E03 ADP 9.59596
387 5J1J ANP 9.59596
388 2OBM ADP 9.59596
389 4TL6 ANP 9.59596
390 4KBF AMP 9.59596
391 4YS0 ADP 9.59596
392 1D2N ANP 9.59596
393 2X7I CIT 9.59596
394 5XKT GNP 10
395 1MKY GDP 10.101
396 5CK5 GDP 10.101
397 3EC1 GDP 10.101
398 2XTZ GSP 10.101
399 3T34 GDP 10.101
400 2D2F ADP 10.101
401 4R43 GDP 10.101
402 1JJV ATP 10.101
403 4BFW ZVW 10.101
404 4TMK T5A 10.101
405 2WJG GDP 10.1064
406 1YRB GDP 10.6061
407 4YC7 GNP 10.6061
408 4TMZ GSP 10.6061
409 4NCN GTP 10.6061
410 1RJ9 GCP 10.6061
411 4IHQ ADP 10.6061
412 1X6V ADP 10.6061
413 4X8O AP5 10.6061
414 2E5V FAD 10.6061
415 3ITJ CIT 10.6061
416 2HF9 GSP 11.1111
417 4AG5 ADP 11.1111
418 3TBK ANP 11.1111
419 2BEK ATP 11.1111
420 3IUY AMP 11.1111
421 2WJH GDP 11.4458
422 2WJH FLC 11.4458
423 4R98 GNH 11.6162
424 1QF5 GDP 11.6162
425 1QF5 RPL 11.6162
426 5TSH ANP 11.6162
427 1JI0 ATP 11.6162
428 5TSH ADP 11.6162
429 3IO3 ADP 11.6162
430 4YJ1 ADP 11.6162
431 1G6O ADP 11.6162
432 3VX3 ADP 11.6162
433 4OHY ANP 11.6162
434 4PJ3 ANP 11.6162
435 3RLF ANP 11.6162
436 1W7J ADP BEF 11.9205
437 4H1V GNP 12.1212
438 2IYL GDP 12.1212
439 3EZ2 ADP 12.1212
440 2WHX ADP 12.1212
441 5WC2 ADP 12.1212
442 5VGR GDP 12.1212
443 4ZDJ UTP 12.1212
444 4OI4 ATP 12.1212
445 2WIC GNP 12.6263
446 6DEF GCP 12.6263
447 4PFO ADP 12.6263
448 1E2K TMC 12.6263
449 2VB6 ADP BEF 12.6263
450 4D0G GTP 13.0435
451 1GXU 2HP 13.1868
452 6C90 ADP 13.4615
453 3E70 GDP 13.6364
454 4ZKD GDP 13.6364
455 1UKZ ADP 13.6364
456 1IN4 ADP 13.6364
457 4IOK ADP 13.6364
458 4IOK XPO 13.6364
459 1SVI GDP 13.8462
460 4HSE ADP 14.1414
461 3L6C MLI 14.4543
462 3B9Q MLI 14.6465
463 4YMU ATP 14.6465
464 2OG2 MLI 14.6465
465 5OEC GDP 14.7208
466 2GJ8 ALF GDP 15.1163
467 2C78 GNP 15.1515
468 3W5J GDP 15.1515
469 4LPS GDP 15.1515
470 2C77 GNP 15.1515
471 4U00 ADP 15.1515
472 5L3R GCP 15.3584
473 1GOT GDP 15.6566
474 2FJU GSP 15.6566
475 1SKQ GDP 16.1616
476 1KK1 GNP 16.1616
477 1X1R GDP 16.2921
478 4MOP 2H5 16.6667
479 1G7S GDP 17.1717
480 3VMF GTP 17.1717
481 2IS6 ADP 17.1717
482 5LTJ ADP 17.1717
483 5LTJ BEF 17.1717
484 5KDO GDP 17.6768
485 6CRK GDP 17.6768
486 1BH2 GSP 17.6768
487 1GP2 GDP 17.6768
488 1Y3A GDP 17.6768
489 2OM2 GDP 17.6768
490 4B47 GDP 17.6768
491 1FQJ GDP 17.6768
492 1FQK GDP 17.6768
493 2ODE ALF GDP 17.6768
494 1SVK ALF GDP 17.6768
495 2FH5 GTP 17.6768
496 5IRR GSP 17.6768
497 1FQK ALF 17.6768
498 2X77 GDP 17.9894
499 1ION ADP 18.1818
500 1Q20 A3P 18.1818
501 1Q20 PLO 18.1818
502 6AU6 GDP 19.1919
503 1CS4 GSP 19.1919
504 2V7Q ATP 19.1919
505 1W0J ADP 19.1919
506 2CK3 ANP 19.1919
507 3Q9L ATP 19.1919
508 2CK3 ADP 19.1919
509 2V7Q ADP 19.1919
510 1W0J ADP BEF 19.1919
511 4NON GDP 19.697
512 3QF7 ANP 20
513 1GWN GTP 20.202
514 4GOX A3P 20.202
515 5K5Z ANP 20.202
516 5WDR GNP 20.4678
517 3REF GDP 20.6186
518 4HI0 GDP 20.7071
519 4KVG GTP 20.8333
520 1GUA GNP 20.9581
521 3X1Z GNP 20.9581
522 4HDQ GNP 20.9581
523 1B0U ATP 21.2121
524 1ZD9 GDP 21.2766
525 1RRC ADP 21.7172
526 1M7B GTP 22.2826
527 3QBT GNP 22.4138
528 4LHW GNP 22.4138
529 3TNF GNP 22.4138
530 3WXM GTP 22.7273
531 3WYF GTP 23.2323
532 3M1I GTP 23.2323
533 6FA4 GNP 23.2323
534 5WLB GNP 23.7374
535 5O2T GSP 23.7374
536 5J1S ATP 23.7374
537 1DAR GDP 24.2424
538 2HCJ GDP 24.3243
539 1M2O GNP 24.7368
540 2NGR GDP 24.7475
541 2J0V GDP 24.7475
542 1GRN GDP 24.7475
543 2NGR AF3 24.7475
544 5UQW GDP 24.8677
545 5OCG GNP 24.8677
546 3NKV GNP 25.1429
547 5TB5 GDP 25.4054
548 5TAR GDP 25.4054
549 3RWO GDP 25.9459
550 5SZH GNP 26.2626
551 4KAX GTP 26.6272
552 5DI3 GNP 27.027
553 3TKL GTP 27.0408
554 1Z0J GTP 27.1186
555 2W83 GTP 27.2727
556 2A9K GDP 27.2727
557 3CPJ GDP 27.2727
558 5H67 ATP 27.5
559 2QTV GNP 28.1437
560 3SFV GDP 28.1768
561 3PQC GDP 28.2051
562 1J2J GTP 28.3133
563 2J59 GTP 28.3133
564 1O3Y GTP 28.3133
565 4K81 GTP 28.655
566 1KMQ GNP 28.8043
567 5E95 GDP 29.1667
568 4U5X GNP 29.2135
569 3CH5 GDP 29.2929
570 5BXQ GDP 29.2929
571 4HAT GNP 29.2929
572 5UWP GNP 29.2929
573 5UWU GNP 29.2929
574 5UWT GNP 29.2929
575 5UWS GNP 29.2929
576 6CIT GNP 29.2929
577 5UWQ GNP 29.2929
578 5UWO GNP 29.2929
579 5DIF GNP 29.2929
580 5UWJ GNP 29.2929
581 5UWW GNP 29.2929
582 5UWH GNP 29.2929
583 5UWI GNP 29.2929
584 5DHF GNP 29.2929
585 5UWR GNP 29.2929
586 1IBR GNP 29.2929
587 5DI9 GNP 29.2929
588 6D5E GNP 29.3413
589 6D5J GNP 29.3413
590 6BVJ GNP 29.3413
591 6D5H GNP 29.3413
592 6D5G GNP 29.3413
593 6BVK GNP 29.3413
594 1LFD GNP 29.3413
595 6BVL GNP 29.3413
596 6D56 GNP 29.3413
597 6D59 GNP 29.3413
598 6BVI GNP 29.3413
599 6D5M GNP 29.3413
600 6D55 GNP 29.3413
601 6D5L GNP 29.3413
602 6D5V GNP 29.3413
603 6BVM GNP 29.3413
604 1G16 GDP 29.4118
605 4XOI GTP 29.4444
606 4YLG GDP 29.4798
607 1WQ1 GDP 29.5181
608 3KUD GDP 29.5181
609 2UZI GTP 29.5181
610 1NVV GNP 29.5181
611 1CXZ GSP 29.6703
612 1UPT GTP 29.8246
613 3AQ4 GDP 29.8913
614 4XSH GSP 30.1676
615 4V0K GDP 30.1775
616 2CJW GDP 30.2083
617 5O74 GDP 30.303
618 5G3Y ADP 30.303
619 1OIX GDP 30.3665
620 1MR3 G3D 30.3867
621 5EE5 GTP 30.4094
622 1TX4 ALF GDP 30.5085
623 3GJ3 GDP 30.8081
624 3GJ7 GDP 30.8081
625 3GJ0 GDP 30.8081
626 3GJ4 GDP 30.8081
627 3GJ5 GDP 30.8081
628 3GJ8 GDP 30.8081
629 2A5F GTP 30.8571
630 1OIV GDP 30.8901
631 3KIF GDL 31.1321
632 1NRJ GTP 31.3131
633 3WYG GTP 31.8681
634 3PCR GTP 32.0988
635 1OW3 GDP 32.1244
636 1R2Q GNP 32.3529
637 4ZI2 GNP 32.6316
638 1R4A GNP 32.7273
639 2HT6 GDP 32.7586
640 4GOJ GNP 32.8042
641 1RE0 GDP 32.9268
642 1S9D GDP 32.9268
643 1WA5 GTP 32.9545
644 3N5C GDP 33.3333
645 2QN6 GDP 33.3333
646 5IRC GDP 33.3333
647 5HPY GDP 33.5135
648 2G77 GDP 33.8384
649 1FZQ GDP 34.2541
650 2BCG GDP 34.3434
651 2EW1 GNP 34.3434
652 1YZQ GNP 34.7059
653 2D7C GTP 34.7305
654 2FFQ GSP 35.0877
655 1TU3 GNP 35.443
656 1Z06 GNP 35.4497
657 1YZN GNP 35.6757
658 5JCZ GDP 35.7542
659 2HV8 GTP 36.0465
660 4LX0 BEF GDP 36.1582
661 3DOE GTP 36.4583
662 2Y8E GNP 36.8715
663 1Z0K GTP 37.7907
664 1VG0 GDP 37.8788
665 1VG8 GNP 37.8788
666 1Z08 GNP 38.2353
667 5JCP GDP ALF 38.3838
668 3E5H GNP 38.764
669 1D5C GDP 38.8889
670 1KAO GDP 38.9222
671 1KSH GDP 39.2473
672 1KY3 GDP 39.5604
673 1YZG GDP 39.6648
674 1F6B GDP 39.899
675 2GCO GNP 40.2985
676 2GCN GDP 40.2985
677 1VG1 GDP 40.5405
678 1VG9 GDP 40.5405
679 1ZJ6 G3D 40.6417
680 6BC0 GSP 41.6216
681 3LXR GDP 41.6216
682 6BCB GSP 41.6216
683 6BCA GSP 41.6216
684 1S8F GDP 42.9379
685 5Z2M GTP 43.1818
686 3RAB GNP 43.1953
687 2EFE GNH 43.6464
688 5WRJ A3P 50
Pocket No.: 2; Query (leader) PDB : 3T1O; Ligand: GDP; Similar sites found with APoc: 19
This union binding pocket(no: 2) in the query (biounit: 3t1o.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 1RLJ FMN None
2 4OOE NDP 1.51515
3 3BER AMP 3.0303
4 5H4S RAM 4.54545
5 3KP6 SAL 4.63576
6 5N6C NAD 5.05051
7 2X3F APC 5.55556
8 1QHO MAL 6.06061
9 5ZYN FAD 6.06061
10 3KIH GDL 7.2165
11 4M7V RAR 7.42857
12 4M7V NAP 7.42857
13 1Q0H NDP 7.57576
14 2YVF FAD 9.09091
15 2YVF NAD 9.09091
16 4GDX GLU 11.6162
17 3L24 GOA 16.6667
18 1FQJ ALF 17.6768
19 1WQ1 AF3 29.5181
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