-->
Receptor
PDB id Resolution Class Description Source Keywords
3QXC 1.34 Å EC: 6.3.3.3 CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM HEL PYLORI COMPLEXED WITH ATP HELICOBACTER PYLORI DTBS DETHIOBIOTIN SYNTHETASE STRUCTURAL GENOMICS ATP BINDBIOLOGY PROTEIN STRUCTURE INITIATIVE MIDWEST CENTER FOR SGENOMICS MCSG LIGASE
Ref.: STRUCTURAL CHARACTERIZATION OF HELICOBACTER PYLORI DETHIOBIOTIN SYNTHETASE REVEALS DIFFERENCES BETWEEN MEMBERS. FEBS J. V. 279 1093 2012
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ATP A:221;
Valid;
none;
Kd = 1.7 uM
507.181 C10 H16 N5 O13 P3 c1nc(...
EDO A:224;
A:225;
A:226;
A:227;
A:228;
A:229;
A:230;
A:231;
A:232;
A:234;
A:235;
A:237;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
GOL A:233;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
MG A:222;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
NO3 A:223;
Invalid;
none;
submit data
62.005 N O3 [N+](...
PEG A:236;
Invalid;
none;
submit data
106.12 C4 H10 O3 C(COC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3QXC 1.34 Å EC: 6.3.3.3 CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM HEL PYLORI COMPLEXED WITH ATP HELICOBACTER PYLORI DTBS DETHIOBIOTIN SYNTHETASE STRUCTURAL GENOMICS ATP BINDBIOLOGY PROTEIN STRUCTURE INITIATIVE MIDWEST CENTER FOR SGENOMICS MCSG LIGASE
Ref.: STRUCTURAL CHARACTERIZATION OF HELICOBACTER PYLORI DETHIOBIOTIN SYNTHETASE REVEALS DIFFERENCES BETWEEN MEMBERS. FEBS J. V. 279 1093 2012
Members (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3QXJ - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
2 3QXC Kd = 1.7 uM ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
3 3QXS - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
4 3QXX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 3QY0 - GDP MG n/a n/a
6 3QXH Kd = 5.8 uM ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3QXJ - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
2 3QXC Kd = 1.7 uM ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
3 3QXS - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
4 3QXX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 3QY0 - GDP MG n/a n/a
6 3QXH Kd = 5.8 uM ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3QXJ - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
2 3QXC Kd = 1.7 uM ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
3 3QXS - ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
4 3QXX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 3QY0 - GDP MG n/a n/a
6 3QXH Kd = 5.8 uM ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ATP; Similar ligands found: 422
No: Ligand ECFP6 Tc MDL keys Tc
1 HEJ 1 1
2 ATP 1 1
3 5FA 0.985507 1
4 AQP 0.985507 1
5 AP5 0.927536 0.971831
6 B4P 0.927536 0.971831
7 BA3 0.913043 0.971831
8 ADP 0.9 1
9 A2D 0.884058 0.971831
10 AGS 0.84 0.945946
11 SAP 0.84 0.945946
12 6YZ 0.833333 0.972222
13 AT4 0.810811 0.958904
14 AN2 0.810811 0.985915
15 25L 0.809524 0.985915
16 AR6 0.802632 0.971831
17 APR 0.802632 0.971831
18 M33 0.8 0.958333
19 ACQ 0.794872 0.972222
20 TAT 0.794872 0.958904
21 T99 0.794872 0.958904
22 AD9 0.792208 0.972222
23 ACP 0.789474 0.972222
24 AMP 0.788732 0.971429
25 A 0.788732 0.971429
26 ANP 0.772152 0.972222
27 CA0 0.753247 0.945205
28 ADX 0.753247 0.873418
29 A22 0.746988 0.985915
30 50T 0.74359 0.958333
31 PRX 0.734177 0.893333
32 APC 0.734177 0.958904
33 ABM 0.733333 0.917808
34 ATF 0.731707 0.958904
35 ITT 0.730769 0.943662
36 7D4 0.730769 0.905405
37 ADQ 0.729412 0.945205
38 A3R 0.729412 0.907895
39 AP2 0.714286 0.958904
40 A12 0.714286 0.958904
41 A1R 0.709302 0.907895
42 SRA 0.706667 0.918919
43 5AL 0.698795 0.931507
44 HFD 0.695122 0.945946
45 9X8 0.693182 0.92
46 OAD 0.693182 0.945205
47 AU1 0.6875 0.972222
48 SRP 0.682353 0.906667
49 G5P 0.680851 0.921053
50 25A 0.678161 0.971831
51 3OD 0.677778 0.945205
52 4AD 0.670455 0.92
53 G3A 0.670213 0.921053
54 00A 0.662921 0.883117
55 RBY 0.662651 0.932432
56 ADP PO3 0.662651 0.943662
57 ADV 0.662651 0.932432
58 BIS 0.659341 0.933333
59 8QN 0.659091 0.931507
60 5SV 0.659091 0.848101
61 OOB 0.659091 0.931507
62 GTA 0.65625 0.886076
63 UP5 0.653061 0.92
64 AMO 0.651685 0.932432
65 PAJ 0.651685 0.884615
66 2A5 0.650602 0.918919
67 MAP 0.647727 0.945946
68 3AT 0.647059 0.971831
69 AHX 0.644444 0.896104
70 DLL 0.644444 0.931507
71 ATR 0.642857 0.971429
72 PAP 0.642857 0.985714
73 PTJ 0.641304 0.896104
74 7D3 0.6375 0.905405
75 3UK 0.637363 0.918919
76 SON 0.634146 0.932432
77 A4P 0.633663 0.843373
78 ALF ADP 0.632184 0.87013
79 ADP ALF 0.632184 0.87013
80 PR8 0.630435 0.85
81 WAQ 0.630435 0.883117
82 LAD 0.630435 0.860759
83 B5V 0.630435 0.906667
84 AFH 0.628866 0.884615
85 LMS 0.628205 0.82716
86 GAP 0.627907 0.893333
87 DTP 0.627907 0.905405
88 VO4 ADP 0.625 0.931507
89 ADP VO4 0.625 0.931507
90 TXA 0.623656 0.932432
91 ME8 0.623656 0.839506
92 1ZZ 0.623656 0.839506
93 NB8 0.623656 0.896104
94 FYA 0.623656 0.905405
95 DQV 0.622449 0.958333
96 T5A 0.621359 0.841463
97 ADN 0.619718 0.84507
98 RAB 0.619718 0.84507
99 XYA 0.619718 0.84507
100 DAL AMP 0.611111 0.905405
101 9SN 0.610526 0.871795
102 48N 0.61 0.896104
103 AP0 0.607843 0.896104
104 9ZD 0.604396 0.907895
105 9ZA 0.604396 0.907895
106 FA5 0.604167 0.906667
107 B5M 0.604167 0.894737
108 YAP 0.604167 0.894737
109 B5Y 0.604167 0.894737
110 NAI 0.60396 0.907895
111 6V0 0.60396 0.896104
112 TXD 0.60396 0.907895
113 DND 0.60396 0.932432
114 NXX 0.60396 0.932432
115 NAX 0.60396 0.873418
116 ADP BMA 0.602151 0.918919
117 A2R 0.6 0.985915
118 OMR 0.598039 0.851852
119 TXE 0.598039 0.907895
120 XAH 0.597938 0.839506
121 7DT 0.593023 0.985714
122 AOC 0.592593 0.821918
123 4UV 0.591837 0.894737
124 DDS 0.590909 0.878378
125 139 0.590476 0.873418
126 CNA 0.584906 0.932432
127 6AD 0.58427 0.909091
128 5AS 0.583333 0.77907
129 5N5 0.581081 0.819444
130 GA7 0.58 0.906667
131 4UU 0.58 0.894737
132 4TC 0.576923 0.896104
133 ADJ 0.575472 0.851852
134 5CD 0.573333 0.805556
135 A4D 0.573333 0.819444
136 RGT 0.571429 0.958904
137 A3P 0.571429 0.971429
138 7D5 0.56962 0.878378
139 LAQ 0.568627 0.839506
140 F2R 0.564815 0.864198
141 80F 0.563636 0.841463
142 YLP 0.563107 0.819277
143 A A 0.5625 0.944444
144 UPA 0.561905 0.907895
145 AV2 0.56044 0.917808
146 COD 0.559633 0.811765
147 4UW 0.557692 0.860759
148 JB6 0.556701 0.883117
149 3AM 0.555556 0.929577
150 ATP A A A 0.555556 0.930556
151 A2P 0.552941 0.957143
152 TYM 0.552381 0.906667
153 NA7 0.552083 0.958904
154 EP4 0.551282 0.753247
155 MYR AMP 0.55102 0.817073
156 PPS 0.549451 0.873418
157 YLC 0.54717 0.839506
158 YLB 0.54717 0.819277
159 NAD 0.545455 0.931507
160 DAT 0.545455 0.905405
161 TYR AMP 0.544554 0.87013
162 G5A 0.544444 0.77907
163 M2T 0.544304 0.734177
164 DTA 0.544304 0.786667
165 3DH 0.54321 0.773333
166 128 0.542857 0.776471
167 AHZ 0.538462 0.817073
168 GTP 0.537634 0.92
169 SSA 0.537634 0.8
170 MTA 0.5375 0.773333
171 IOT 0.537037 0.831325
172 A3D 0.535714 0.918919
173 ARG AMP 0.533981 0.829268
174 7MD 0.533981 0.8625
175 AR6 AR6 0.533981 0.917808
176 YLA 0.53211 0.819277
177 AMP DBH 0.529412 0.893333
178 IMO 0.529412 0.929577
179 TAD 0.528846 0.884615
180 AYB 0.527273 0.809524
181 A5A 0.526882 0.807229
182 HDV 0.526882 0.893333
183 TSB 0.526316 0.819277
184 EAD 0.525424 0.873418
185 2AM 0.52439 0.943662
186 6RE 0.52381 0.759494
187 7DD 0.522727 0.985714
188 V3L 0.521739 0.971831
189 AVV 0.520833 0.896104
190 BTX 0.517857 0.841463
191 NAE 0.517241 0.894737
192 52H 0.515789 0.77907
193 54H 0.515789 0.788235
194 VMS 0.515789 0.788235
195 NSS 0.515464 0.8
196 BT5 0.513274 0.831325
197 NAQ 0.512821 0.871795
198 ZAS 0.511905 0.766234
199 J7C 0.511628 0.769231
200 A3N 0.511628 0.786667
201 5X8 0.511111 0.763158
202 53H 0.510417 0.77907
203 8X1 0.510417 0.752809
204 5CA 0.510417 0.8
205 NVA LMS 0.510204 0.752809
206 ARU 0.510204 0.860759
207 AF3 ADP 3PG 0.509259 0.8375
208 ZID 0.508475 0.918919
209 P1H 0.508197 0.851852
210 OVE 0.505882 0.905405
211 S4M 0.505747 0.666667
212 LEU LMS 0.50505 0.752809
213 LPA AMP 0.504673 0.817073
214 7MC 0.504587 0.841463
215 DZD 0.5 0.884615
216 FB0 0.5 0.804598
217 MAO 0.5 0.759036
218 DSZ 0.5 0.8
219 LSS 0.5 0.761364
220 DSH 0.5 0.725
221 P5A 0.5 0.744444
222 NDE 0.495935 0.932432
223 N0B 0.495798 0.819277
224 M24 0.495726 0.85
225 YLY 0.495726 0.809524
226 NJP 0.495575 0.945946
227 9K8 0.49505 0.714286
228 MGP 0.494737 0.884615
229 6C6 0.494624 0.881579
230 NAJ PZO 0.491379 0.848101
231 0WD 0.491228 0.921053
232 6G0 0.489583 0.884615
233 GJV 0.488636 0.75
234 6FA 0.488189 0.841463
235 5AD 0.486842 0.746479
236 KAA 0.485149 0.752809
237 GSU 0.485149 0.77907
238 71V 0.483146 0.907895
239 NEC 0.482759 0.746667
240 A3G 0.482759 0.8
241 ODP 0.482456 0.909091
242 FAS 0.48062 0.851852
243 FAD 0.48062 0.851852
244 7D7 0.480519 0.743243
245 FDA 0.480315 0.833333
246 N6P 0.48 0.915493
247 2SA 0.479167 0.932432
248 GP3 0.478723 0.921053
249 4TA 0.478261 0.807229
250 SFG 0.478261 0.75
251 G A A A 0.478261 0.871795
252 AMP NAD 0.478261 0.905405
253 NPW 0.477876 0.886076
254 NDP 0.477876 0.921053
255 NDC 0.47619 0.871795
256 YSA 0.47619 0.77907
257 NAJ PYZ 0.475 0.807229
258 MGO 0.474227 0.860759
259 GDP 0.473684 0.92
260 NZQ 0.473684 0.909091
261 TXP 0.473684 0.921053
262 6IA 0.473684 0.8375
263 A7D 0.472527 0.776316
264 SFD 0.469231 0.734043
265 A5D 0.468085 0.786667
266 SA8 0.468085 0.707317
267 ZDA 0.468085 0.864865
268 12D 0.46789 0.785714
269 PGS 0.467391 0.883117
270 MHZ 0.467391 0.697674
271 8PZ 0.466667 0.8
272 62F 0.466165 0.8625
273 DA 0.465909 0.878378
274 D5M 0.465909 0.878378
275 GGZ 0.464646 0.825
276 SAH 0.463158 0.74359
277 SAI 0.463158 0.734177
278 FAY 0.462687 0.8625
279 Y3J 0.4625 0.726027
280 PO4 PO4 A A A A PO4 0.460784 0.902778
281 AAM 0.460674 0.971429
282 RFL 0.459259 0.821429
283 SMM 0.459184 0.686047
284 HF7 0.459184 0.893333
285 AMZ 0.458824 0.916667
286 C2R 0.458824 0.90411
287 SAM 0.458333 0.690476
288 A3S 0.456522 0.810811
289 FNK 0.455224 0.804598
290 U A 0.453782 0.907895
291 7C5 0.453704 0.818182
292 EEM 0.453608 0.690476
293 AAT 0.453608 0.707317
294 XNP 0.452991 0.873418
295 A G 0.452991 0.883117
296 PRT 0.45283 0.931507
297 AIR 0.451219 0.901408
298 62X 0.45098 0.666667
299 DCA 0.45 0.823529
300 ETB 0.45 0.833333
301 GSP 0.45 0.873418
302 U A G G 0.449153 0.883117
303 NIA 0.448276 0.822785
304 A3T 0.446809 0.821918
305 A A A 0.446602 0.905405
306 K15 0.446602 0.682353
307 PUA 0.446281 0.884615
308 6K6 0.445545 0.930556
309 GEK 0.445545 0.7375
310 4YB 0.445455 0.761364
311 S7M 0.444444 0.690476
312 Z5A 0.443548 0.77907
313 1DG 0.443548 0.921053
314 DG1 0.443548 0.921053
315 0T1 0.442623 0.823529
316 COA 0.442623 0.823529
317 WSA 0.442478 0.788235
318 8BR 0.43956 0.906667
319 8Q2 0.438596 0.772727
320 101 0.438202 0.878378
321 IDP 0.4375 0.918919
322 NVA 2AD 0.4375 0.759494
323 9JJ 0.435714 0.8625
324 NAP 0.435484 0.945205
325 APU 0.434783 0.894737
326 A U 0.434783 0.87013
327 7RP 0.433333 0.928571
328 A6D 0.432692 0.722892
329 AMX 0.432 0.833333
330 J7V 0.432 0.833333
331 TAP 0.432 0.907895
332 COS 0.432 0.804598
333 CAO 0.432 0.795455
334 30N 0.432 0.752688
335 V1N 0.431193 0.917808
336 649 0.429825 0.744444
337 P5F 0.429577 0.823529
338 NA0 0.428571 0.932432
339 SCO 0.428571 0.823529
340 CMX 0.428571 0.823529
341 7RA 0.428571 0.957747
342 0UM 0.427184 0.698795
343 GAV 0.427184 0.884615
344 QQY 0.426966 0.815789
345 1RB 0.426966 0.885714
346 ACK 0.426966 0.861111
347 G1R 0.425743 0.907895
348 GCP 0.425743 0.896104
349 FAM 0.425197 0.804598
350 FCX 0.425197 0.795455
351 ACO 0.425197 0.795455
352 GNH 0.424242 0.907895
353 F2N 0.423611 0.813953
354 GKE 0.422018 0.884615
355 GDD 0.422018 0.884615
356 GDC 0.422018 0.884615
357 HAX 0.421875 0.804598
358 3AD 0.421687 0.805556
359 9GM 0.421569 0.896104
360 GNP 0.421569 0.896104
361 FA9 0.42069 0.864198
362 TM1 0.420561 0.77381
363 KB1 0.420561 0.698795
364 H6Y 0.42 0.945205
365 2MC 0.419847 0.769231
366 3KK 0.418605 0.804598
367 FYN 0.418605 0.823529
368 S8M 0.417476 0.759494
369 7L1 0.417323 0.795455
370 2VA 0.416667 0.8
371 26A 0.416667 0.763158
372 NHD 0.416667 0.905405
373 QQX 0.41573 0.805195
374 CA6 0.415385 0.729167
375 OXK 0.415385 0.804598
376 COK 0.415385 0.804598
377 SOP 0.415385 0.804598
378 MCD 0.415385 0.804598
379 YE1 0.413534 0.813953
380 RMB 0.413043 0.873239
381 FAI 0.413043 0.916667
382 AS 0.413043 0.833333
383 CO6 0.412214 0.804598
384 1VU 0.412214 0.795455
385 CMC 0.412214 0.804598
386 NMX 0.412214 0.76087
387 SXZ 0.411215 0.710843
388 ANZ 0.410714 0.8
389 SCA 0.410448 0.804598
390 CAJ 0.409091 0.804598
391 SCD 0.409091 0.823529
392 EO7 0.408602 0.788235
393 D3Y 0.407767 0.789474
394 CC5 0.407407 0.816901
395 KH3 0.40708 0.674419
396 A C A C 0.406504 0.848101
397 SLU 0.406504 0.770115
398 G 0.40625 0.906667
399 5GP 0.40625 0.906667
400 A1S 0.406015 0.804598
401 IVC 0.406015 0.813953
402 MLC 0.406015 0.804598
403 3HC 0.406015 0.813953
404 1HE 0.406015 0.786517
405 BCO 0.406015 0.804598
406 GTG 0.405405 0.886076
407 NMN AMP PO4 0.404959 0.87013
408 3D1 0.404762 0.773333
409 3L1 0.404762 0.773333
410 2BA 0.404255 0.915493
411 CMP 0.404255 0.901408
412 VRT 0.40404 0.769231
413 SO8 0.40404 0.789474
414 MCA 0.402985 0.795455
415 COO 0.402985 0.804598
416 CAA 0.402985 0.813953
417 3NZ 0.401869 0.782051
418 G2R 0.401869 0.884615
419 ZZB 0.4 0.77381
420 2FA 0.4 0.813333
421 MC4 0.4 0.76087
422 2CP 0.4 0.795455
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3QXC; Ligand: ATP; Similar sites found with APoc: 570
This union binding pocket(no: 1) in the query (biounit: 3qxc.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 4YDS ATP None
2 2CJW GDP None
3 3MJH GTP None
4 3VX3 ADP None
5 1R2Q GNP None
6 1G16 GDP None
7 4B47 GDP 1.23967
8 1L2T ATP 1.2766
9 4KFU ACP 1.41509
10 4R2I ANP 1.42857
11 5XKT GNP 1.5
12 1V8K ANP 1.65289
13 5X40 ACP 1.65289
14 2CBZ ATP 1.68776
15 1KO8 6PG 1.71429
16 3B7G ANP 1.73913
17 4U00 ADP 2.06612
18 2XT3 ADP 2.06612
19 1OXV ANP 2.06612
20 3FWY ADP 2.06612
21 2IS6 ADP 2.06612
22 1WDT GTP 2.06612
23 4TMZ GSP 2.06612
24 6AU6 GDP 2.06612
25 1PUJ GNP 2.06612
26 6DEF GCP 2.06612
27 6BSX GDP 2.24719
28 6BSX E7S 2.24719
29 4YLG GDP 2.31214
30 4QRH 0O2 2.38095
31 1KK1 GNP 2.47934
32 2W58 ADP 2.47934
33 2D2F ADP 2.47934
34 3P4X ADP 2.47934
35 2IYL GDP 2.47934
36 3DKP ADP 2.47934
37 2HF9 GSP 2.47934
38 4YJ1 ADP 2.47934
39 5MZN ADP 2.47934
40 4KBF AMP 2.47934
41 5JCP GDP ALF 2.47934
42 4NCN GTP 2.47934
43 1U0J ADP 2.47934
44 2HCR AMP 2.47934
45 1IN4 ADP 2.47934
46 4Z7X 3CX 2.52101
47 1HTW ADP 2.53165
48 4M9Q GNP 2.64317
49 2CHG ANP 2.65487
50 1AKY AP5 2.72727
51 1S3G AP5 2.76498
52 4DKX GDP 2.77778
53 4TTQ ATP 2.7907
54 1Z0F GDP 2.7933
55 4D0G GTP 2.85714
56 3U6B GDP 2.89256
57 3WY9 GDP 2.89256
58 2HCJ GDP 2.89256
59 4J0Q GDP 2.89256
60 5JBQ GDP 2.89256
61 3WYA GDP 2.89256
62 4G5G GDP 2.89256
63 1D8T GDP 2.89256
64 3U6K GDP 2.89256
65 1R0X ATP 2.89256
66 6A20 ADP 2.89256
67 1G6H ADP 2.89256
68 3DC4 ADP 2.89256
69 4DCT GDP 2.89256
70 2BVN GNP 2.89256
71 1ION ADP 2.89256
72 5HCN GCP 2.89256
73 3IO3 ADP 2.89256
74 5ZBR ANP 2.89256
75 1XKV ATP 2.89256
76 4QOS ADP 2.89256
77 4LJ9 ACP 2.89256
78 4FCW ADP 2.89256
79 5Z69 AGS 2.89256
80 4DDY DN6 2.89256
81 2C9O ADP 2.89256
82 1YTM ATP 2.89256
83 2O0J ADP 2.89256
84 1NY5 ADP 2.89256
85 4PFO ADP 2.89256
86 6B4K ANP 2.89256
87 4RZ3 ADP 2.89256
88 5EXT ADP 2.89256
89 1TAD GDP 2.89256
90 1TAD ALF 2.89256
91 2WKQ GTP 2.89256
92 1A99 PUT 2.89256
93 1W7J ADP BEF 2.89256
94 3UIE ANP 3
95 2OZE AGS 3.02013
96 1LVG ADP 3.0303
97 1D5C GDP 3.08642
98 5G3Y ADP 3.09735
99 5G41 AP5 3.13901
100 5LEF GTP 3.14136
101 2X77 GDP 3.1746
102 2WJG GDP 3.19149
103 1BG2 ADP 3.30579
104 3TK1 GDP 3.30579
105 1G3Q ADP 3.30579
106 4HSE ADP 3.30579
107 3ZFD ANP 3.30579
108 4LIK CIT 3.30579
109 1B7T ADP 3.30579
110 4IHQ ADP 3.30579
111 5FJJ MAN 3.30579
112 2QZ4 ADP 3.30579
113 2GK6 ADP 3.30579
114 1D8C GLV 3.30579
115 1IHU ADP 3.30579
116 1IHU AF3 3.30579
117 5I0H ADP BEF 3.30579
118 4H1V GNP 3.30579
119 4ZKD GDP 3.30579
120 1H65 GDP 3.30579
121 2D7D ADP 3.30579
122 1W5T ADP 3.30579
123 1W5T ANP 3.30579
124 1OS1 PYR 3.30579
125 1OS1 ATP 3.30579
126 2XAU ADP 3.30579
127 3SFV GDP 3.31492
128 4YMU ATP 3.33333
129 4QDI ATP 3.38983
130 3NKV GNP 3.42857
131 1TKU 5RP 3.43137
132 1RYH GNP 3.44828
133 3TNF GNP 3.44828
134 4QM7 GTP 3.50877
135 5UIV ADP 3.52423
136 1YZQ GNP 3.52941
137 3Q85 GNP 3.5503
138 4V0K GDP 3.5503
139 3QBT GNP 3.57143
140 1QF9 ALF 3.60825
141 1QF9 C5P 3.60825
142 1QF9 ADP 3.60825
143 3Q72 GNP 3.61446
144 2WJH GDP 3.61446
145 2WJH FLC 3.61446
146 2A5J GDP 3.66492
147 1VHT BA3 3.66972
148 5M04 GDP 3.71901
149 5GOE GDP 3.71901
150 4PC3 GDP 3.71901
151 5N69 ADP 3.71901
152 3BOS CDP 3.71901
153 4R98 GNH 3.71901
154 4Q1A UDP 3.71901
155 4Q1A 2XZ 3.71901
156 2JLR ANP 3.71901
157 1OYY AGS 3.71901
158 3TKL GTP 3.71901
159 2ZTS ADP 3.71901
160 5NM7 GLY 3.71901
161 4XGU ADP 3.71901
162 1UJ2 C5P 3.71901
163 1UJ2 ADP 3.71901
164 1G7S GDP 3.71901
165 4NON GDP 3.71901
166 1MH1 GNP 3.76344
167 1G4U GDP 3.80435
168 2YOH WMJ 3.80952
169 5GVR LMR 3.84615
170 1GWN GTP 3.90244
171 2GCO GNP 3.9801
172 2GCN GDP 3.9801
173 1I4D GDP 4.01786
174 1Z0A GDP 4.02299
175 4LHW GNP 4.02299
176 3REF GDP 4.12371
177 2VVG ADP 4.13223
178 2NCD ADP 4.13223
179 3A4M ADP 4.13223
180 4R43 GDP 4.13223
181 5L3V GDP 4.13223
182 5LB3 ADP 4.13223
183 3FKQ ATP 4.13223
184 6C90 ADP 4.13223
185 3DZD ADP 4.13223
186 2QEN ADP 4.13223
187 4ZG4 VO4 ADP 4.13223
188 3WXM GTP 4.13223
189 5IRR GSP 4.13223
190 4BFW ZVW 4.13223
191 5I34 GDP 4.13223
192 3BER AMP 4.13223
193 3BFX A3P 4.13223
194 2ZEJ GDP 4.13223
195 1YXM ADE 4.13223
196 1DAR GDP 4.13223
197 1ZIN AP5 4.14747
198 1JI0 ATP 4.16667
199 4KVG GTP 4.16667
200 1ZUI SKM 4.16667
201 1A4R GNH 4.18848
202 1A4R GDP 4.18848
203 4ITR GDP 4.18848
204 4X8O AP5 4.20561
205 3TTM PUT 4.33526
206 1M7B GTP 4.34783
207 4YC7 GNP 4.41989
208 5W75 GDP 4.54545
209 3A1S GDP 4.54545
210 4LYA ATP 4.54545
211 4PX9 ADP 4.54545
212 2FAH GDP 4.54545
213 4D81 ADP 4.54545
214 5WC2 ADP 4.54545
215 1G6O ADP 4.54545
216 2CE7 ADP 4.54545
217 2WMO GTP 4.54545
218 3KJI ADP 4.54545
219 5Y6N ADP 4.54545
220 5VHC BEF ADP 4.54545
221 4NE2 ADP 4.54545
222 4NE2 SH2 4.54545
223 2FJU GSP 4.54545
224 1WF3 GNP 4.54545
225 5XDR ADP 4.54545
226 5O74 GDP 4.56853
227 1T5C ADP 4.58453
228 1NRJ GTP 4.58716
229 4MKG AP5 4.60829
230 4NU0 AP5 4.60829
231 1XX6 ADP 4.71204
232 3RAB GNP 4.73373
233 4ZI2 GNP 4.73684
234 1Z06 GNP 4.7619
235 5UQW GDP 4.7619
236 1KAO GDP 4.79042
237 5URY PAM 4.79452
238 1JJV ATP 4.85437
239 4E03 ADP 4.85437
240 3ZQ6 ADP ALF 4.93827
241 5YT0 GDP 4.95868
242 5FG3 GDP 4.95868
243 1SKQ GDP 4.95868
244 2WIC GNP 4.95868
245 4AG5 ADP 4.95868
246 2WHX ADP 4.95868
247 6G14 G4P 4.95868
248 2OBM ADP 4.95868
249 2C78 GNP 4.95868
250 2C77 GNP 4.95868
251 6C0B MLI 4.95868
252 2VB6 ADP BEF 4.95868
253 1KK8 BEF ADP 4.95868
254 2XTN GTP 4.95868
255 5HR5 ADP 4.95868
256 2J0W ASP 4.95868
257 5EQ8 HSO 4.95868
258 1FZQ GDP 4.97238
259 2F9L GDP 5.02513
260 1TU3 GNP 5.06329
261 4BQS K2Q 5.11364
262 4BQS ADP 5.11364
263 4DID GDP 5.18135
264 6FA4 GNP 5.20231
265 2C5L GTP 5.20231
266 1OIV GDP 5.2356
267 1OIX GDP 5.2356
268 1UPT GTP 5.26316
269 5EE5 GTP 5.26316
270 1Z08 GNP 5.29412
271 5O2T GSP 5.32544
272 2RGX AP5 5.33981
273 1RRC ADP 5.3719
274 5W7Q GDP 5.3719
275 5W76 GDP 5.3719
276 1F6B GDP 5.3719
277 1F9V ADP 5.3719
278 4LC1 GDP 5.3719
279 3EC1 GDP 5.3719
280 5IRN ADP 5.3719
281 2GDJ ANP 5.3719
282 4ZDJ UTP 5.3719
283 5LTJ ADP 5.3719
284 3RC3 ANP 5.3719
285 2XTZ GSP 5.3719
286 4YS0 ADP 5.3719
287 2ZJ5 ADP 5.3719
288 2JK0 ASP 5.3719
289 5DI3 GNP 5.40541
290 5WLB GNP 5.42169
291 1CLU DBG 5.42169
292 1WQ1 GDP 5.42169
293 3AQ4 GDP 5.43478
294 1R4A GNP 5.45455
295 5OEC GDP 5.46448
296 4P3Y GDP 5.49451
297 1MR3 G3D 5.52486
298 3T1O GDP 5.55556
299 2NGR GDP 5.55556
300 4LX0 BEF GDP 5.64972
301 3IUY AMP 5.70175
302 2A5F GTP 5.71429
303 2VOH CIT 5.73248
304 1LFD GNP 5.74713
305 4C4P GNP 5.78035
306 2AWN ADP 5.78512
307 2G77 GDP 5.78512
308 5M7P ADP 5.78512
309 2Z49 AMG 5.78512
310 2BEK ATP 5.78512
311 2G77 AF3 5.78512
312 6CS8 F9Y 5.78512
313 2GWH A3P 5.78512
314 2HV8 GTP 5.81395
315 1ZJ6 G3D 5.88235
316 3GJ7 GDP 5.88235
317 3GJ4 GDP 5.88235
318 3GJ3 GDP 5.88235
319 3GJ5 GDP 5.88235
320 3GJ8 GDP 5.88235
321 3GJ0 GDP 5.88235
322 3LRE ADP 5.91549
323 2PL3 ADP 5.9322
324 1BO4 COA 5.95238
325 2D7C GTP 5.98802
326 3CH5 GDP 6.01852
327 5BXQ GDP 6.01852
328 1J2J GTP 6.0241
329 2J59 GTP 6.0241
330 1O3Y GTP 6.0241
331 2W83 GTP 6.06061
332 2EFE GNH 6.07735
333 1RE0 GDP 6.09756
334 1S9D GDP 6.09756
335 3IIJ ADP 6.11111
336 2J0V GDP 6.13208
337 1YZG GDP 6.14525
338 3N5C GDP 6.17284
339 3PCR GTP 6.17284
340 4FRZ ADP 6.19835
341 3H4S ADP 6.19835
342 3COB ADP 6.19835
343 1SQ5 ADP 6.19835
344 3MD0 GDP 6.19835
345 2RCN GDP 6.19835
346 5L3W GDP 6.19835
347 3DEF GDP 6.19835
348 4KVA GTP 6.19835
349 3TBK ANP 6.19835
350 5L3S GNP 6.19835
351 1TQ4 GDP 6.19835
352 5UPK GNP 6.19835
353 3ITJ CIT 6.19835
354 3EWA ANP 6.21118
355 4KAX GTP 6.21118
356 2ZFI ADP 6.28415
357 5KSP GDP 6.31579
358 1G7C 5GP 6.38298
359 1GRN GDP 6.40394
360 2A9K GDP 6.41711
361 4MKF AP5 6.45161
362 3T5G GDP 6.57895
363 1KSH GDP 6.57895
364 1YRB GDP 6.61157
365 1G41 ADP 6.61157
366 2J5V PCA 6.61157
367 1D2E GDP 6.61157
368 2ZPA ADP 6.61157
369 5TB5 GDP 6.66667
370 3PQC GDP 6.66667
371 4GOJ GNP 6.66667
372 1VKJ A3P 6.66667
373 1HE1 GDP 6.66667
374 2Y8E GNP 6.70391
375 5TAR GDP 6.75676
376 5U32 GDP 6.77966
377 1M2O GNP 6.84211
378 2KIN ADP 7
379 5YV5 ADP 7.02479
380 1YQT ADP 7.02479
381 4LPS GDP 7.02479
382 3AB3 GDP 7.02479
383 5VGR GDP 7.02479
384 3ZS9 ADP ALF 7.02479
385 1ZCB GDP 7.02479
386 2WOJ ADP ALF 7.02479
387 1LVK MNT BEF 7.02479
388 3CX8 GSP 7.02479
389 4BAS GNP 7.03518
390 5E5U MLI 7.03518
391 1UAD GNP 7.07071
392 1U8Z GDP 7.14286
393 1SVI GDP 7.17949
394 3DOE GTP 7.27273
395 1S8F GDP 7.34463
396 4XVU ATP 7.37327
397 3KUD GDP 7.40741
398 3CNL GNP 7.43802
399 5KSZ GCP 7.43802
400 1VG1 GDP 7.43802
401 1VG9 GDP 7.43802
402 1FP6 ADP 7.43802
403 5TSH ANP 7.43802
404 2DPY ADP 7.43802
405 4IOK XPO 7.43802
406 3Q9L ATP 7.43802
407 5TSH ADP 7.43802
408 4IOK ADP 7.43802
409 6H5E ANP 7.43802
410 4WZA ADP 7.43802
411 4WZA ACP 7.43802
412 1NJF ADP 7.43802
413 1NJF AGS 7.43802
414 1CS4 GSP 7.43802
415 5WRI A3P 7.43802
416 1X6V ADP 7.43802
417 3WCZ CIT 7.43802
418 2FFQ GSP 7.60234
419 1OW3 GDP 7.77202
420 2QTV GNP 7.78443
421 4OI4 ATP 7.82609
422 5SZH GNP 7.84314
423 2OG2 MLI 7.85124
424 3B9Q MLI 7.85124
425 3EZ2 ADP 7.85124
426 1XP8 AGS 7.85124
427 1CR1 TTP 7.85124
428 1GP2 GDP 7.85124
429 5L3R GCP 7.85124
430 1K6M AGS 7.85124
431 4K81 GTP 7.85124
432 1Y3A GDP 7.85124
433 1SVM ATP 7.85124
434 1SVK ALF GDP 7.85124
435 6CRK GDP 7.85124
436 5KUT GDP 7.93651
437 5MVR ADP 8.02469
438 2BME GNP 8.06452
439 5ZB0 TYD 8.08081
440 5ZB0 ADP 8.08081
441 4D0N GDP 8.10811
442 3LXR GDP 8.10811
443 5KDO GDP 8.10811
444 6BC0 GSP 8.10811
445 6BCB GSP 8.10811
446 6BCA GSP 8.10811
447 2GJ8 ALF GDP 8.13953
448 1KMQ GNP 8.15217
449 1VG0 GDP 8.21256
450 1VG8 GNP 8.21256
451 1GOT GDP 8.21918
452 1CXZ GSP 8.24176
453 5E95 GDP 8.24742
454 1JJ7 ADP 8.26446
455 5JCZ GDP 8.26446
456 4XSH GSP 8.37989
457 4U5X GNP 8.42697
458 1TX4 ALF GDP 8.47458
459 2OFW ADX 8.65385
460 3KTA AP5 8.67052
461 2GKS ADP 8.67769
462 3NHB ADP 8.67769
463 1DS6 GDP 8.67769
464 5LLB 6YZ 8.67769
465 2IXE ATP 8.67769
466 6CZY PMP 8.67769
467 3T12 GDP ALF 8.82353
468 3H86 AP5 8.85417
469 2W2X GSP 8.87097
470 4HI0 GDP 9.04523
471 5HPY GDP 9.05172
472 1GOJ ADP 9.09091
473 3BFV ADP 9.09091
474 5ZXD ATP 9.09091
475 5FTB ANP 9.09091
476 5Z2M GTP 9.09091
477 5AK0 8V1 9.09091
478 5FHD ADP ALF 9.09091
479 2ODE ALF GDP 9.09091
480 4XFR CIT 9.09091
481 1EK0 GNP 9.41177
482 1M7G AV2 9.47867
483 1M7G ADX 9.47867
484 1M7G ADP 9.47867
485 4V03 ADP 9.50413
486 4A4Z ANP 9.50413
487 1ZD9 GDP 9.50413
488 4WEI GLC GAL 9.50413
489 1ZC3 GNP 9.71429
490 3RWO GDP 9.72973
491 2HT6 GDP 9.77011
492 3W5J GDP 9.80392
493 3ZIA ADP 9.83607
494 3ZIA ATP 9.83607
495 4P4T GDP 9.91736
496 6FAA ADP 9.91736
497 3RLF ANP 9.91736
498 1B0U ATP 9.92366
499 5IRC GDP 9.95025
500 2PEZ DAT 10.0559
501 2PEZ GGZ 10.0559
502 2FH5 GTP 10.2703
503 5CK5 GDP 10.3306
504 2UZI GTP 10.5263
505 2QG6 NMN 10.5528
506 2Y65 ADP 10.7438
507 4XTR ADP 10.8108
508 4XTR ATP 10.8108
509 1OFH ADP 10.9195
510 4PPF FLC 11.157
511 3E70 GDP 11.157
512 1XMV ADP 11.157
513 4RD0 GDP 11.157
514 2ZR9 DTP 11.157
515 3TMK T5A 11.157
516 5K5Z ANP 11.157
517 5H7K GDP 11.5702
518 5IFS ADP 11.5702
519 2FSH ANP 11.5702
520 3HU3 AGS 11.5702
521 2QN6 GDP 11.828
522 1Z2A GDP 11.9048
523 1FQJ GDP 12.2449
524 1FQK GDP 12.2449
525 5H7J GCP 12.3967
526 2V7Q ATP 12.3967
527 2V7Q ADP 12.3967
528 2CK3 ANP 12.3967
529 1W0J ADP 12.3967
530 1W0J ADP BEF 12.3967
531 3CPJ GDP 12.3967
532 2JAQ DCP 12.6829
533 4OHY ANP 12.8099
534 1YVD GNP 13.0178
535 1GXU 2HP 13.1868
536 4PJ3 ANP 13.2231
537 3B5J 12D 13.6364
538 5J1J ANP 13.6364
539 5XC5 GTP 13.6364
540 4ZNL BEF ADP 14.0496
541 1R6B ADP 14.0496
542 3VMF GTP 14.0496
543 3FVQ ATP 14.2061
544 1KY3 GDP 14.2857
545 3FB4 AP5 14.3519
546 5H67 ATP 15.0754
547 1Z6T ADP 15.2893
548 2BCG GDP 15.534
549 4CVN ADP 15.7025
550 1Q19 SSC 15.7025
551 4IEE AGS 15.7025
552 1MKY GDP 16.5289
553 1XPJ TLA 16.6667
554 1Y63 ADP 16.8478
555 2CDN ADP 16.9154
556 2EW1 GNP 16.9154
557 1YZN GNP 17.2973
558 5BN3 ADP 17.3554
559 4WZ6 ATP 18.1818
560 3BC1 GNP 18.4615
561 2PZE ATP 18.7773
562 3QF7 ANP 22
563 5BQ5 ADP BEF 22.2222
564 1RJ9 GCP 22.314
565 1NN5 ANP 23.2558
566 1NN5 2DT 23.2558
567 4JLV ADP 28.9256
568 1Z0K GTP 30.4348
569 1Z0J GTP 32.2034
570 2OM2 GDP 33.3333
Pocket No.: 2; Query (leader) PDB : 3QXC; Ligand: ATP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3qxc.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback