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Receptor
PDB id Resolution Class Description Source Keywords
3QBT 2 Å EC: 3.1.3.36 CRYSTAL STRUCTURE OF OCRL1 540-678 IN COMPLEX WITH RAB8A:GPP HOMO SAPIENS PROTEIN TRANSPORT VESICULAR TRAFFICKING GTPASE LOWE SYNDRIMMUNOGLOBULIN FOLD RAB8A OCRL1 ENDOCYTOSIS CLATHRIN APHOSPHOINOSITIDE ASH RHOGAP PROTEIN TRANSPORT-HYDROLASE
Ref.: A STRUCTURAL BASIS FOR LOWE SYNDROME CAUSED BY MUTA THE RAB-BINDING DOMAIN OF OCRL1. EMBO J. V. 30 1659 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GNP A:200;
C:200;
E:200;
G:200;
 Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
 submit data
522.196 C10 H17 N6 O13 P3 c1nc2...
MG A:201;
C:201;
E:201;
G:201;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
24.305 Mg [Mg+2...
SO4 B:1;
D:2;
 Invalid;
Invalid;
 none;
none;
 submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3QBT 2 Å EC: 3.1.3.36 CRYSTAL STRUCTURE OF OCRL1 540-678 IN COMPLEX WITH RAB8A:GPP HOMO SAPIENS PROTEIN TRANSPORT VESICULAR TRAFFICKING GTPASE LOWE SYNDRIMMUNOGLOBULIN FOLD RAB8A OCRL1 ENDOCYTOSIS CLATHRIN APHOSPHOINOSITIDE ASH RHOGAP PROTEIN TRANSPORT-HYDROLASE
Ref.: A STRUCTURAL BASIS FOR LOWE SYNDROME CAUSED BY MUTA THE RAB-BINDING DOMAIN OF OCRL1. EMBO J. V. 30 1659 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3QBT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3QBT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
50% Homology Family (47)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 204 families.
1 3QBT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
2 5WFO - 5UU C19 H16 Cl F N2 c1cc(ccc1N....
3 6FA3 Kd = 0.038 uM D1Z C30 H36 N4 O5 CN(C)Cc1cc....
4 5WFQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
5 5O2T Kd = 3.9 nM GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
6 5WPM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
7 5WFR - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 5UFQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
9 6AMB - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
10 6FA1 - D2Z C20 H25 N2 O4 C[NH+](C)C....
11 5UFE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
12 5WFP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
13 5WHB - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 5WPL - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
15 5XCO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
16 1NVU - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
17 5WHE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
18 3KUC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
19 1C1Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
20 5TAR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
21 4DXA - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
22 4HDO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
23 3MJH - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
24 5E95 Kd = 15.7 nM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
25 3CF6 - SP1 C10 H12 N5 O5 P S c1nc(c2c(n....
26 2CJW Kd = 2.5 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
27 6FA4 Kd = 0.051 uM D1W C23 H25 N3 O3 CN(C)Cc1cc....
28 2C5L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
29 4K81 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
30 1LFD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
31 4KVG - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
32 3TNF - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
33 1ZC4 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
34 1ZC3 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
35 2A9K - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
36 2A78 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
37 1WQ1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
38 3TKL - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
39 3DDC - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
40 3KUD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
41 1TU3 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
42 1UAD Ka = 7260000 M^-1 GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
43 5O74 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
44 3SFV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
45 4URZ Kd = 3 mM VJP C11 H14 N2 O3 S c1cc(ccc1N....
46 4URX Kd = 1.3 mM HXY C11 H14 Br N c1cc(ccc1C....
47 4URY Kd = 6 mM RV1 C10 H12 N2 O3 S c1cc(ccc1N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GNP; Similar ligands found: 132
No: Ligand ECFP6 Tc MDL keys Tc
1 GNP 1 1
2 9GM 1 1
3 GDP 0.839506 0.973684
4 GP3 0.82716 0.948718
5 GTP 0.809524 0.973684
6 GNH 0.807229 0.986842
7 G1R 0.77907 0.961039
8 GCP 0.77907 0.948718
9 GSP 0.770115 0.925
10 5GP 0.756098 0.960526
11 G 0.756098 0.960526
12 G2R 0.747253 0.936709
13 GMV 0.747126 0.948718
14 GAV 0.714286 0.936709
15 GP2 0.712644 0.936709
16 G2P 0.711111 0.936709
17 Y9Z 0.708333 0.880952
18 GDC 0.690722 0.936709
19 GDD 0.690722 0.936709
20 GKE 0.690722 0.936709
21 G5P 0.686869 0.948718
22 GPG 0.684211 0.936709
23 GTG 0.683673 0.91358
24 GDR 0.683673 0.936709
25 GFB 0.683673 0.936709
26 JB2 0.68 0.936709
27 GKD 0.68 0.936709
28 6CK 0.676768 0.91358
29 G3A 0.676768 0.948718
30 GDX 0.673267 0.948718
31 ALF 5GP 0.67033 0.86747
32 YGP 0.663265 0.879518
33 GPD 0.656863 0.902439
34 ALF GDP 0.645833 0.86747
35 GDP AF3 0.645833 0.86747
36 GDP ALF 0.645833 0.86747
37 JB3 0.641509 0.925
38 DBG 0.640351 0.974359
39 G3D 0.638298 0.960526
40 G4P 0.625 0.960526
41 GMP 0.621951 0.857143
42 NGD 0.62037 0.936709
43 GGM 0.618182 0.925926
44 0O2 0.616162 0.960526
45 2MD 0.603604 0.870588
46 CAG 0.60177 0.904762
47 U2G 0.590909 0.91358
48 FEG 0.590909 0.858824
49 GDP 7MG 0.590476 0.888889
50 MGD 0.587719 0.870588
51 G G 0.586538 0.924051
52 ZGP 0.585586 0.848837
53 CG2 0.580357 0.91358
54 ANP 0.568421 0.922078
55 PGD 0.567797 0.902439
56 MD1 0.567797 0.870588
57 3GP 0.56044 0.922078
58 TPG 0.558333 0.822222
59 GH3 0.55 0.948052
60 FE9 0.546219 0.778947
61 GPX 0.539216 0.922078
62 G4M 0.539062 0.860465
63 DGI 0.536082 0.9
64 BGO 0.535088 0.901235
65 IDP 0.53125 0.947368
66 DGT 0.53 0.9
67 2GP 0.526882 0.935065
68 G1R G1R 0.520325 0.901235
69 GCP G 0.518868 0.897436
70 A G 0.516949 0.911392
71 U A G G 0.512605 0.911392
72 G A A A 0.504202 0.9
73 AGO 0.504202 0.91358
74 P2G 0.5 0.860759
75 G1G 0.5 0.902439
76 R7I 0.49505 0.922078
77 MGP 0.49505 0.936709
78 R5I 0.49505 0.922078
79 PGD O 0.492063 0.831461
80 6G0 0.490196 0.936709
81 P1G 0.489796 0.85
82 AKW 0.483051 0.869048
83 DG 0.474227 0.8875
84 DGP 0.474227 0.8875
85 G U 0.466667 0.878049
86 IMP 0.463918 0.934211
87 G2Q 0.462963 0.936709
88 GPC 0.459677 0.858824
89 G C 0.459016 0.878049
90 GTA 0.448276 0.91358
91 G7M 0.444444 0.924051
92 MAP 0.439252 0.898734
93 G G G RPC 0.435484 0.853659
94 B4P 0.434343 0.871795
95 AP5 0.434343 0.871795
96 ADP 0.434343 0.896104
97 A2D 0.43299 0.871795
98 AT4 0.43 0.8625
99 G G G C 0.426357 0.890244
100 AU1 0.425743 0.922078
101 SGP 0.425743 0.807229
102 BA3 0.424242 0.871795
103 A G C C 0.423077 0.888889
104 35G 0.423077 0.909091
105 PCG 0.423077 0.909091
106 C2E 0.423077 0.897436
107 APC G U 0.421875 0.864198
108 HEJ 0.421569 0.896104
109 ATP 0.421569 0.896104
110 ACQ 0.419048 0.873418
111 5GP 5GP 0.419048 0.860759
112 5FA 0.417476 0.896104
113 AQP 0.417476 0.896104
114 01G 0.417391 0.880952
115 AN2 0.415842 0.909091
116 UNP 0.415842 0.810127
117 6AD 0.415094 0.821429
118 M33 0.411765 0.860759
119 ITT 0.411765 0.846154
120 G C C C 0.410448 0.901235
121 HFD 0.409524 0.851852
122 G U34 0.408 0.86747
123 ACP 0.407767 0.873418
124 6YZ 0.407407 0.873418
125 AR6 0.403846 0.871795
126 APR 0.403846 0.871795
127 DG DG 0.403509 0.845238
128 A4P 0.403226 0.848837
129 UCG 0.402985 0.888889
130 SAP 0.4 0.851852
131 AGS 0.4 0.851852
132 AD9 0.4 0.873418
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3QBT; Ligand: GNP; Similar sites found with APoc: 544
This union binding pocket(no: 1) in the query (biounit: 3qbt.bio4) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 3PQC GDP 1.42857
2 1VHT BA3 2.14286
3 3QX9 ATP 2.17391
4 5GVR LMR 2.29885
5 5J1J ANP 2.29885
6 1ION ADP 2.29885
7 2OQ5 BEN 2.85714
8 3HU3 AGS 2.85714
9 1QF9 ADP 2.85714
10 1QF9 C5P 2.85714
11 1QF9 ALF 2.85714
12 4GOX A3P 2.87356
13 5H4S RAM 2.87356
14 4DDY DN6 3.44828
15 3CEV ARG 3.44828
16 2GJ8 ALF GDP 3.57143
17 4AG5 ADP 3.57143
18 1SVI GDP 3.57143
19 3QXC ATP 3.57143
20 1G8S MET 3.57143
21 5WRI A3P 3.57143
22 5WRJ A3P 3.57143
23 2O66 FLC 3.7037
24 5W76 GDP 4.02299
25 5W7Q GDP 4.02299
26 1XP8 AGS 4.02299
27 3IUY AMP 4.02299
28 1Z83 AP5 4.02299
29 3U6B GDP 4.28571
30 2BVN GNP 4.28571
31 5U32 GDP 4.28571
32 1TQ4 GDP 4.28571
33 1D8T GDP 4.28571
34 4G5G GDP 4.28571
35 5JBQ GDP 4.28571
36 3U6K GDP 4.28571
37 1G7S GDP 4.28571
38 5XKT GNP 4.28571
39 5M04 GDP 4.28571
40 3Q9L ATP 4.28571
41 5FTB ANP 4.28571
42 4IDN GNP 4.28571
43 5URY PAM 4.28571
44 1W5T ANP 4.28571
45 3UIE ANP 4.28571
46 1W5T ADP 4.28571
47 5FHD ADP ALF 4.28571
48 1OSS BEN 4.28571
49 2DT9 THR 4.28571
50 2YPI PGA 4.28571
51 2IYL GDP 4.57746
52 3A1S GDP 4.5977
53 4PC3 GDP 4.5977
54 3KJI ADP 4.5977
55 2D7D ADP 4.5977
56 4RZ3 ADP 4.5977
57 2C9O ADP 4.5977
58 3BFX A3P 4.5977
59 1SVM ATP 4.5977
60 5MEX PAP 4.65839
61 6AIC AMP 4.6729
62 5W75 GDP 5
63 1M7G AV2 5
64 5W75 SUC 5
65 1F9V ADP 5
66 1VKJ A3P 5
67 4O48 ASP 5
68 1M7G ADP 5
69 4ARU TLA 5
70 1M7G ADX 5
71 1Y7I SAL 5
72 1KK1 GNP 5.17241
73 2VVG ADP 5.17241
74 1JJ7 ADP 5.17241
75 1DAR GDP 5.17241
76 2FAH GDP 5.17241
77 2Q2Y ADP 5.17241
78 2Q2Y MKR 5.17241
79 2IXE ATP 5.17241
80 4X8O AP5 5.17241
81 2RGX AP5 5.17241
82 1ZIN AP5 5.17241
83 3AB4 THR 5.17241
84 2J5V PCA 5.17241
85 5NM7 GLY 5.17241
86 1CR1 TTP 5.17241
87 1UKZ ADP 5.17241
88 4YS0 ADP 5.17241
89 1APZ ASP 5.55556
90 1WDT GTP 5.71429
91 4P3Y GDP 5.71429
92 3B5J 12D 5.71429
93 5IFS ADP 5.71429
94 4FCW ADP 5.71429
95 4LJ9 ACP 5.71429
96 3KTA AP5 5.71429
97 4PVR ASP 5.71429
98 2ZTS ADP 5.71429
99 4ZKD GDP 5.74713
100 2RCN GDP 5.74713
101 3MD0 GDP 5.74713
102 2WIC GNP 5.74713
103 4LYA ATP 5.74713
104 5LTJ BEF 5.74713
105 2B8W ALF 5GP 5.74713
106 3BOS CDP 5.74713
107 1LVK MNT BEF 5.74713
108 4R98 GNH 5.74713
109 1IHU AF3 5.74713
110 1IHU ADP 5.74713
111 4Y4V DAL 5.74713
112 4A4Z ANP 5.74713
113 2BEK ATP 5.74713
114 3IIJ ADP 5.74713
115 2OZE AGS 5.74713
116 5LTJ ADP 5.74713
117 1KO8 6PG 5.74713
118 5ZB0 TYD 5.74713
119 5ZB0 ADP 5.74713
120 5BSH PRO 5.74713
121 1PTR PRB 6
122 3TBK ANP 6.12613
123 1BH2 GSP 6.32184
124 1G6H ADP 6.32184
125 1SVK ALF GDP 6.32184
126 1B0U ATP 6.32184
127 1ZCB GDP 6.32184
128 1Y3A GDP 6.32184
129 3ZFD ANP 6.32184
130 6CRK GDP 6.32184
131 2OM2 GDP 6.32184
132 1QF5 GDP 6.32184
133 1QF5 RPL 6.32184
134 2QEN ADP 6.32184
135 3QKT ANP 6.32184
136 5EXT ADP 6.32184
137 3BFV ADP 6.32184
138 5J47 6JJ 6.32184
139 6FMC DUE 6.32911
140 3EC1 GDP 6.42857
141 6AU6 GDP 6.42857
142 1YQT ADP 6.42857
143 2DPY ADP 6.42857
144 4E03 ADP 6.42857
145 2HF9 GSP 6.42857
146 6DEF GCP 6.42857
147 2PL3 ADP 6.42857
148 1DAK DPU 6.42857
149 1DAK ADP 6.42857
150 2CHG ANP 6.42857
151 5K5Z ANP 6.42857
152 3QF7 ANP 6.42857
153 4ZDJ UTP 6.42857
154 2XCU C5P 6.42857
155 4Z7X 3CX 6.42857
156 1OS1 ATP 6.42857
157 1T5C ADP 6.42857
158 1VMK GUN 6.42857
159 1OS1 PYR 6.42857
160 2FH5 GTP 6.48649
161 1M26 GAL A2G 6.76692
162 5MVR ADP 6.79012
163 2GJ5 VD3 6.79012
164 1SKQ GDP 6.89655
165 2XTZ GSP 6.89655
166 1WF3 GNP 6.89655
167 2CDN ADP 6.89655
168 1GP2 GDP 6.89655
169 5KDO GDP 6.89655
170 4OHY ANP 6.89655
171 4HSE ADP 6.89655
172 1LOJ U 6.89655
173 1LOJ URI 6.89655
174 1NRJ GTP 6.96203
175 4DCT GDP 7.14286
176 2Y65 ADP 7.14286
177 5TSH ADP 7.14286
178 5TSH ANP 7.14286
179 4ZG4 VO4 ADP 7.14286
180 1G6O ADP 7.14286
181 1XX6 ADP 7.14286
182 2WOJ ADP ALF 7.14286
183 2ZPA ADP 7.14286
184 3DC4 ADP 7.14286
185 3BER AMP 7.14286
186 3FVQ ATP 7.14286
187 3LRE ADP 7.14286
188 3P4X ADP 7.14286
189 6AR9 3L4 7.14286
190 2WJH GDP 7.22892
191 2WJH FLC 7.22892
192 1GOJ ADP 7.47126
193 4U00 ADP 7.47126
194 2PZE ATP 7.47126
195 3CNL GNP 7.47126
196 2FNA ADP 7.47126
197 5AOG IAC 7.47126
198 1X6V ADP 7.47126
199 5IRN ADP 7.47126
200 2ZJ5 ADP 7.47126
201 1XF1 CIT 7.47126
202 2W58 ADP 7.85714
203 6A20 ADP 7.85714
204 5ZBR ANP 7.85714
205 3TK1 GDP 7.85714
206 1FP6 ADP 7.85714
207 1H65 GDP 7.85714
208 4R43 GDP 7.85714
209 1U0J ADP 7.85714
210 1FNN ADP 7.85714
211 1IN4 ADP 7.85714
212 3FJG 3PG 7.85714
213 5XDR ADP 7.85714
214 1ONI BEZ 7.97101
215 2WJG GDP 8.04598
216 2OFW ADX 8.04598
217 2PEZ GGZ 8.04598
218 2PEZ DAT 8.04598
219 1E2K TMC 8.04598
220 4MKG AP5 8.04598
221 3RC3 ANP 8.04598
222 3DZD ADP 8.04598
223 1QHG ATP 8.04598
224 3NHB ADP 8.04598
225 5KK4 44E 8.33333
226 5UIV ADP 8.37004
227 1FQJ ALF 8.57143
228 1FQK ALF 8.57143
229 3CX8 GSP 8.57143
230 1TAD ALF 8.57143
231 1TAD GDP 8.57143
232 5I0H ADP BEF 8.57143
233 1FQJ GDP 8.57143
234 1FQK GDP 8.57143
235 2WHX ADP 8.57143
236 2XTN GTP 8.57143
237 1B7T ADP 8.57143
238 1R0X ATP 8.57143
239 4P4T GDP 8.57143
240 4IEE AGS 8.57143
241 4YJ1 ADP 8.57143
242 5N69 ADP 8.57143
243 1YTM ATP 8.57143
244 3R7F CP 8.57143
245 4WOP CTP 8.57143
246 3COB ADP 8.62069
247 5IRR GSP 8.62069
248 1RRC ADP 8.62069
249 1PUJ GNP 8.62069
250 4KFU ACP 8.62069
251 2IS6 ADP 8.62069
252 4XVU ATP 8.62069
253 5Z69 AGS 8.62069
254 4NU0 AP5 8.62069
255 5G3Y ADP 8.62069
256 1KK8 BEF ADP 8.63309
257 2IL4 COA 8.73786
258 3WY9 GDP 9.1954
259 4WZ6 ATP 9.1954
260 3WYA GDP 9.1954
261 1D2E GDP 9.1954
262 5MZN ADP 9.1954
263 6FAA ADP 9.1954
264 2BIF ANP 9.1954
265 2BIF SIN 9.1954
266 1AKY AP5 9.1954
267 3VM7 GLC 9.1954
268 4QOS ADP 9.1954
269 1QHH ATP 9.1954
270 2QG6 NMN 9.1954
271 5FG3 GDP 9.28571
272 3VMF GTP 9.28571
273 3WXM GTP 9.28571
274 1G7C 5GP 9.28571
275 1JI0 ATP 9.28571
276 1JJV ATP 9.28571
277 1HTW ADP 9.28571
278 1XMV ADP 9.28571
279 5Y6N ADP 9.28571
280 4ZNL BEF ADP 9.28571
281 5WC2 ADP 9.28571
282 4PFO ADP 9.28571
283 4MKF AP5 9.28571
284 1Y63 ADP 9.28571
285 6F5W KG1 9.28571
286 1LK7 DER 9.28571
287 3KC1 2T6 9.28571
288 2I4I AMP 9.28571
289 1F2U ATP 9.45946
290 5YT0 GDP 9.52381
291 1BG2 ADP 9.77011
292 2CE7 ADP 9.77011
293 2GK6 ADP 9.77011
294 4IOK ADP 9.77011
295 4IOK XPO 9.77011
296 1NST A3P 9.77011
297 4YDS ATP 10
298 3DKP ADP 10
299 3DEF GDP 10
300 2FSH ANP 10
301 3ITJ CIT 10
302 6B8B ADP 10
303 3AB3 GDP 10.3448
304 1OXV ANP 10.3448
305 5KUT GDP 10.3448
306 3B7G ANP 10.3448
307 1IWE IMP 10.3448
308 3FWY ADP 10.3448
309 4Q1A 2XZ 10.3448
310 4Q1A UDP 10.3448
311 2NCD ADP 10.3448
312 1P72 ADP 10.3448
313 3H86 AP5 10.3448
314 4R2I ANP 10.7143
315 1OYY AGS 10.7143
316 1D2N ANP 10.7143
317 1R6B ADP 10.7143
318 2VB6 ADP BEF 10.7383
319 4J0Q GDP 10.9195
320 4XGU ADP 10.9195
321 5AK0 8V1 10.9195
322 2O0J ADP 10.9195
323 5HR5 ADP 10.9195
324 4PX9 ADP 10.9195
325 1GXU 2HP 10.989
326 2RDK MAN MAN 11.0092
327 4QM7 GTP 11.1111
328 1YRB GDP 11.4286
329 2OBM ADP 11.4286
330 2D2F ADP 11.4286
331 3ZQ6 ADP ALF 11.4286
332 3FB4 AP5 11.4286
333 2QZ4 ADP 11.4286
334 4PJ3 ANP 11.4286
335 5G41 AP5 11.4286
336 5M7P ADP 11.4286
337 2C78 GNP 11.4943
338 2C77 GNP 11.4943
339 4D81 ADP 11.4943
340 1L2T ATP 11.4943
341 5VGR GDP 11.4943
342 3EWA ANP 11.4943
343 1DCP HBI 11.5385
344 4LPS GDP 12.069
345 1LVG ADP 12.069
346 2GDJ ANP 12.069
347 5VHC BEF ADP 12.069
348 1OFH ADP 12.069
349 1G41 ADP 12.069
350 2CBZ ATP 12.069
351 3FYH ADP 12.069
352 5YV5 ADP 12.1429
353 4NON GDP 12.1429
354 1G3Q ADP 12.1429
355 1BO4 COA 12.5
356 5LB3 ADP 12.6437
357 1Z6T ADP 12.6437
358 1T3D CYS 12.6437
359 4QRH 0O2 12.6437
360 1AQU A3P 12.6437
361 3ZIA ADP 12.6984
362 3ZIA ATP 12.6984
363 2ODE ALF GDP 12.8571
364 5GOE GDP 12.8571
365 3UG4 AHR 12.8571
366 1W0J ADP 12.8571
367 1W0J ADP BEF 12.8571
368 3IO3 ADP 12.8571
369 1NHX FTB 12.8571
370 1NHX PEP 12.8571
371 2GMV UN8 12.8571
372 4PU6 ASP 12.9771
373 4OI4 ATP 13.0435
374 4RD0 GDP 13.2184
375 4PPF FLC 13.2184
376 2QN6 GDP 13.2184
377 4LC1 GDP 13.2184
378 2ZR9 DTP 13.2184
379 2A19 ANP 13.2184
380 4TTQ ATP 13.2184
381 4V03 ADP 13.2296
382 2HCJ GDP 13.5135
383 5CK5 GDP 13.5714
384 4HI0 GDP 13.5714
385 1W7J ADP BEF 13.5714
386 4TL6 ANP 13.5714
387 4BFW ZVW 13.5714
388 5L3V GDP 14.2857
389 5BQ5 ADP BEF 14.3678
390 6C90 ADP 14.3678
391 4KBF AMP 14.3678
392 2X7I CIT 14.3678
393 4CVN ADP 14.6597
394 3RLF ANP 14.9425
395 3FKQ ATP 14.9425
396 2AWN ADP 14.9425
397 3T34 GDP 15
398 1S3G AP5 15
399 1SQL GUN 15.0685
400 2VOH CIT 15.2866
401 2GWH A3P 15.5172
402 2JBH 5GP 15.5172
403 4NCN GTP 15.7143
404 4TMZ GSP 15.7143
405 4IHQ ADP 15.7143
406 6B4K ANP 15.7143
407 1K6M AGS 15.7143
408 1NY5 ADP 15.7143
409 1UJ2 ADP 15.7143
410 1UJ2 C5P 15.7143
411 3H4S ADP 16.092
412 4FRZ ADP 16.092
413 4XTR ATP 16.2162
414 4XTR ADP 16.2162
415 2XT3 ADP 16.4286
416 5BN3 ADP 16.4286
417 2Z49 AMG 16.4286
418 2Z48 NGA 16.4286
419 4YMU ATP 16.4286
420 5X40 ACP 17.1429
421 6G14 G4P 17.2414
422 1XKV ATP 17.2414
423 4GBM A3P 17.2414
424 5E5U MLI 17.8161
425 4NE2 SH2 17.8571
426 4NE2 ADP 17.8571
427 5H68 AGS 17.8571
428 2CK3 ANP 18
429 2CK3 ADP 18
430 2V7Q ATP 18
431 2V7Q ADP 18
432 1NN5 2DT 18.3908
433 1NN5 ANP 18.3908
434 3E70 GDP 18.5714
435 2OG2 MLI 18.5714
436 3B9Q MLI 18.5714
437 2Z5F A3P 18.5714
438 1SQ5 ADP 18.5714
439 1P9B GDP 18.9655
440 1F5N GNP 19.2857
441 5H67 ATP 19.2857
442 1V8K ANP 19.5402
443 4JLV ADP 19.5402
444 4H1V GNP 19.5402
445 4BQS ADP 19.5402
446 4BQS K2Q 19.5402
447 5HCN GCP 20
448 2GKS ADP 20
449 5L3R GCP 20
450 2XAU ADP 20
451 4B47 GDP 20.1149
452 4WEI GLC GAL 20.1149
453 1ZUI SKM 20.2381
454 2ZFI ADP 20.6897
455 3VX3 ADP 20.6897
456 1CS4 GSP 21.4286
457 4KVA GTP 21.8391
458 5KSP GDP 22.4138
459 3T12 GDP ALF 22.4138
460 1YZG GDP 22.4138
461 5KSZ GCP 22.4138
462 3T1O GDP 22.4138
463 5ZXD ATP 22.8571
464 4WZA ACP 22.8571
465 4WZA ADP 22.8571
466 2KIN ADP 23
467 2JLR ANP 24.1379
468 3W5J GDP 24.7126
469 5J1S ATP 25
470 5I34 GDP 25.2874
471 4TQK NAG 25.7143
472 4M9Q GNP 25.8621
473 3EZ2 ADP 26.4286
474 4BAS GNP 27.0115
475 1RJ9 GCP 27.5862
476 2X77 GDP 29.3103
477 5DI3 GNP 29.8851
478 1NJF ADP 29.8851
479 1NJF AGS 29.8851
480 5H7K GDP 30.7143
481 5H7J GCP 30.7143
482 1M2O GNP 31.0345
483 1GOT GDP 31.5068
484 2QTV GNP 32.3353
485 4V0K GDP 33.1361
486 1ZD9 GDP 33.3333
487 6CS8 F9Y 33.3333
488 1ZJ6 G3D 33.908
489 3A4M ADP 33.908
490 3DOE GTP 34.4828
491 1KSH GDP 34.4828
492 5L3S GNP 35.7143
493 5L3W GDP 35.7143
494 4YLG GDP 35.8382
495 2A5F GTP 36.7816
496 3AQ4 GDP 36.7816
497 4KAX GTP 37.2781
498 1MR3 G3D 37.3563
499 2W83 GTP 38.1818
500 2J59 GTP 38.5542
501 1J2J GTP 38.5542
502 1O3Y GTP 38.5542
503 3PCR GTP 38.8889
504 1F6B GDP 39.0805
505 2ZEJ GDP 39.0805
506 3N5C GDP 39.5062
507 1RE0 GDP 39.6341
508 1S9D GDP 39.6341
509 4ZI2 GNP 40
510 4GOJ GNP 40.2116
511 1FZQ GDP 41.9889
512 3ZS9 ADP ALF 42.1053
513 1UPT GTP 43.2749
514 5EE5 GTP 44.4444
515 1R4A GNP 44.8485
516 3Q85 GNP 45.5621
517 1E96 GTP 47.1264
518 2WKQ GTP 47.1264
519 3REF GDP 47.1264
520 1I4D GDP 47.7011
521 1MH1 GNP 47.7011
522 2FJU GSP 47.7011
523 6BSX GDP 47.7011
524 1HE1 GDP 47.7011
525 3T5G GDP 47.7011
526 1HE1 AF3 47.7011
527 6BSX E7S 47.7011
528 1G4U AF3 47.7011
529 1G4U GDP 47.7011
530 1MKY GDP 47.7011
531 2W2X GSP 48.2759
532 1DS6 GDP 48.2759
533 5UPK GNP 48.8506
534 1NF3 GNP 48.8506
535 1RYH GNP 48.8506
536 1A4R GNH 49.4253
537 1A4R GDP 49.4253
538 1GRN GDP 49.4253
539 4YC7 GNP 49.4253
540 1GRN AF3 49.4253
541 4ITR GDP 49.4253
542 2NGR GDP 49.4253
543 4DID GDP 49.4253
544 2NGR AF3 49.4253
545 3GJ4 GDP 50
546 3GJ7 GDP 50
547 3M1I GTP 50
548 3WYF GTP 50
549 3GJ5 GDP 50
550 3WYG GTP 50
551 3GJX GTP 50
552 3GJ8 GDP 50
Pocket No.: 2; Query (leader) PDB : 3QBT; Ligand: GNP; Similar sites found with APoc: 19
This union binding pocket(no: 2) in the query (biounit: 3qbt.bio2) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 2Z9I GLY ALA THR VAL 3.57143
2 2ZL4 ALA ALA ALA ALA 3.57143
3 2WGV CIT 4.02299
4 2R4V GSH 4.02299
5 1UJ5 5RP 4.28571
6 4K7O EKZ 6.42857
7 1O8B ABF 6.89655
8 1DNP MHF 7.47126
9 1LH0 ORO 7.47126
10 4UOX PLP 8.57143
11 3BP1 GUN 8.57143
12 3BMN AX3 9.1954
13 1Q19 SSC 9.77011
14 1A78 TDG 11.9403
15 4CP8 MLI 12.6437
16 3B8I OXL 13.7931
17 5NGZ 2BG 14.9425
18 5LJW ANP 15
19 2Z48 A2G 16.4286
Pocket No.: 3; Query (leader) PDB : 3QBT; Ligand: GNP; Similar sites found with APoc: 9
This union binding pocket(no: 3) in the query (biounit: 3qbt.bio3) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 2WPW ACO 5.71429
2 3FXU TSU 5.74713
3 1M0S CIT 8.04598
4 4UOX PUT 8.57143
5 1P6O HPY 8.69565
6 1MLY ACZ PLP 9.77011
7 2YOH WMJ 9.77011
8 4ADC PLP 12.069
9 1P4V GLY 13.5714
Pocket No.: 4; Query (leader) PDB : 3QBT; Ligand: GNP; Similar sites found with APoc: 6
This union binding pocket(no: 4) in the query (biounit: 3qbt.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 4V36 LYN 4.28571
2 3N6M GTP 5.71429
3 5DT6 GLU 17.2414
4 1P9B HDA 18.9655
5 3N7S 3N7 19.7917
6 2PKA BEN 22.8571
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