Receptor
PDB id Resolution Class Description Source Keywords
3QBT 2 Å EC: 3.1.3.36 CRYSTAL STRUCTURE OF OCRL1 540-678 IN COMPLEX WITH RAB8A:GPP HOMO SAPIENS PROTEIN TRANSPORT VESICULAR TRAFFICKING GTPASE LOWE SYNDRIMMUNOGLOBULIN FOLD RAB8A OCRL1 ENDOCYTOSIS CLATHRIN APHOSPHOINOSITIDE ASH RHOGAP PROTEIN TRANSPORT-HYDROLASE
Ref.: A STRUCTURAL BASIS FOR LOWE SYNDROME CAUSED BY MUTA THE RAB-BINDING DOMAIN OF OCRL1. EMBO J. V. 30 1659 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GNP A:200;
C:200;
E:200;
G:200;
 Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
 submit data
522.196 C10 H17 N6 O13 P3 c1nc2...
MG A:201;
C:201;
E:201;
G:201;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
24.305 Mg [Mg+2...
SO4 B:1;
D:2;
 Invalid;
Invalid;
 none;
none;
 submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3QBT 2 Å EC: 3.1.3.36 CRYSTAL STRUCTURE OF OCRL1 540-678 IN COMPLEX WITH RAB8A:GPP HOMO SAPIENS PROTEIN TRANSPORT VESICULAR TRAFFICKING GTPASE LOWE SYNDRIMMUNOGLOBULIN FOLD RAB8A OCRL1 ENDOCYTOSIS CLATHRIN APHOSPHOINOSITIDE ASH RHOGAP PROTEIN TRANSPORT-HYDROLASE
Ref.: A STRUCTURAL BASIS FOR LOWE SYNDROME CAUSED BY MUTA THE RAB-BINDING DOMAIN OF OCRL1. EMBO J. V. 30 1659 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3QBT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3QBT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3QBT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GNP; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 GNP 1 1
2 GDP 0.839506 0.973684
3 GP3 0.82716 0.948718
4 GTP 0.809524 0.973684
5 GNH 0.807229 0.986842
6 G1R 0.77907 0.961039
7 GCP 0.77907 0.948718
8 GSP 0.770115 0.925
9 5GP 0.756098 0.960526
10 G 0.756098 0.960526
11 G2R 0.747253 0.936709
12 GMV 0.747126 0.948718
13 GAV 0.714286 0.936709
14 GP2 0.712644 0.936709
15 G2P 0.711111 0.936709
16 Y9Z 0.708333 0.880952
17 GDP MG 0.696629 0.9
18 GDD 0.690722 0.936709
19 GDC 0.690722 0.936709
20 GKE 0.690722 0.936709
21 GDP BEF 0.688889 0.878049
22 G5P 0.686869 0.948718
23 GPG 0.684211 0.936709
24 GTG 0.683673 0.91358
25 GFB 0.683673 0.936709
26 GDR 0.683673 0.936709
27 JB2 0.68 0.936709
28 GKD 0.68 0.936709
29 G3A 0.676768 0.948718
30 6CK 0.676768 0.91358
31 GDX 0.673267 0.948718
32 ALF 5GP 0.67033 0.86747
33 GTP MG 0.666667 0.9
34 BEF GDP 0.666667 0.86747
35 YGP 0.663265 0.879518
36 GCP G 0.659574 0.911392
37 GPD 0.656863 0.902439
38 GDP AF3 0.645833 0.86747
39 GDP ALF 0.645833 0.86747
40 JB3 0.641509 0.925
41 DBG 0.640351 0.974359
42 G3D 0.638298 0.960526
43 G4P 0.625 0.960526
44 GMP 0.621951 0.857143
45 NGD 0.62037 0.936709
46 GGM 0.618182 0.925926
47 0O2 0.616162 0.960526
48 G G 0.61 0.911392
49 2MD 0.603604 0.870588
50 CAG 0.60177 0.904762
51 U2G 0.590909 0.91358
52 FEG 0.590909 0.858824
53 GDP 7MG 0.590476 0.888889
54 MGD 0.587719 0.870588
55 ZGP 0.585586 0.848837
56 CG2 0.580357 0.91358
57 ANP 0.568421 0.922078
58 PGD 0.567797 0.902439
59 MD1 0.567797 0.870588
60 3GP 0.56044 0.922078
61 TPG 0.558333 0.822222
62 GH3 0.55 0.948052
63 FE9 0.546219 0.778947
64 GPX 0.539216 0.922078
65 G4M 0.539062 0.860465
66 DGI 0.536082 0.9
67 BGO 0.535088 0.901235
68 IDP 0.53125 0.947368
69 DGT 0.53 0.9
70 2GP 0.526882 0.935065
71 G1R G1R 0.520325 0.901235
72 I2C FE2 CMO CMO 0.516667 0.811111
73 U A G G 0.512605 0.911392
74 AGO 0.504202 0.91358
75 G A A A 0.504202 0.9
76 P2G 0.5 0.860759
77 G1G 0.5 0.902439
78 MGP 0.49505 0.936709
79 PGD O 0.492063 0.831461
80 6G0 0.490196 0.936709
81 P1G 0.489796 0.85
82 DGP 0.474227 0.8875
83 DG 0.474227 0.8875
84 G G U 0.473684 0.911392
85 IMP 0.463918 0.934211
86 G2Q 0.462963 0.936709
87 GPC 0.459677 0.858824
88 G C 0.459016 0.878049
89 GTA 0.448276 0.91358
90 G7M 0.444444 0.924051
91 MAP 0.439252 0.898734
92 G G G RPC 0.435484 0.853659
93 B4P 0.434343 0.871795
94 AP5 0.434343 0.871795
95 ADP 0.434343 0.896104
96 A2D 0.43299 0.871795
97 U G A 0.431655 0.86747
98 G G G C 0.426357 0.890244
99 SGP 0.425743 0.807229
100 AU1 0.425743 0.922078
101 BA3 0.424242 0.871795
102 35G 0.423077 0.909091
103 PCG 0.423077 0.909091
104 A G C C 0.423077 0.888889
105 C2E 0.423077 0.897436
106 APC G U 0.421875 0.864198
107 ATP 0.421569 0.896104
108 ACQ 0.419048 0.873418
109 5GP 5GP 0.419048 0.860759
110 AQP 0.417476 0.896104
111 5FA 0.417476 0.896104
112 01G 0.417391 0.880952
113 UNP 0.415842 0.810127
114 AN2 0.415842 0.909091
115 6AD 0.415094 0.821429
116 ITT 0.411765 0.846154
117 M33 0.411765 0.860759
118 G C C C 0.410448 0.901235
119 G U34 0.408 0.86747
120 ACP 0.407767 0.873418
121 APR 0.403846 0.871795
122 AR6 0.403846 0.871795
123 DG DG 0.403509 0.845238
124 A4P 0.403226 0.848837
125 UCG 0.402985 0.888889
126 AD9 0.4 0.873418
127 SAP 0.4 0.851852
128 AGS 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3QBT; Ligand: GNP; Similar sites found: 383
This union binding pocket(no: 1) in the query (biounit: 3qbt.bio4) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3PQC GDP 0.00000001387 0.54381 1.42857
2 5J1J ANP 0.00005196 0.46747 2.29885
3 1ION ADP 0.0001414 0.41578 2.29885
4 1QF9 ALF 0.008192 0.4038 2.85714
5 1QF9 ADP 0.008192 0.4038 2.85714
6 1QF9 C5P 0.008192 0.4038 2.85714
7 4GOX A3P 0.001078 0.4173 2.87356
8 2GJ8 ALF GDP 0.000000000225 0.69664 3.57143
9 1SVI GDP 0.0000000002351 0.55968 3.57143
10 3QXC ATP 0.001387 0.42347 3.57143
11 4AG5 ADP 0.000006306 0.40948 3.57143
12 1Z83 AP5 0.006019 0.40591 4.02299
13 2BVN GNP 0.00000000001705 0.65317 4.28571
14 1TQ4 GDP 0.00000001495 0.58491 4.28571
15 3U6B GDP 0.000000000125 0.56544 4.28571
16 1D8T GDP 0.0000000004127 0.5647 4.28571
17 4G5G GDP 0.0000000004583 0.5638 4.28571
18 5JBQ GDP 0.0000000004486 0.56377 4.28571
19 3U6K GDP 0.0000000008893 0.55695 4.28571
20 1G7S GDP 0.000000002658 0.55579 4.28571
21 5M04 GDP 0.0000000008339 0.55011 4.28571
22 4IDN GNP 0.00003012 0.46989 4.28571
23 3Q9L ATP 0.00003039 0.45107 4.28571
24 3UIE ANP 0.00003204 0.4321 4.28571
25 5FHD ADP ALF 0.0003106 0.42587 4.28571
26 5FTB ANP 0.0001998 0.40824 4.28571
27 1W5T ANP 0.001656 0.4005 4.28571
28 2IYL GDP 0.000002952 0.45772 4.57746
29 4PC3 GDP 0.00000003842 0.54342 4.5977
30 3A1S GDP 0.00000004882 0.52757 4.5977
31 3KJI ADP 0.00004562 0.44213 4.5977
32 4RZ3 ADP 0.00007793 0.43894 4.5977
33 2C9O ADP 0.0001904 0.43383 4.5977
34 1SVM ATP 0.01401 0.40339 4.5977
35 1M7G ADX 0.0005699 0.44543 5
36 1M7G ADP 0.0006912 0.43893 5
37 1F9V ADP 0.000001099 0.43107 5
38 1M7G AV2 0.000007184 0.42917 5
39 1KK1 GNP 0.000000003753 0.533 5.17241
40 1DAR GDP 0.00000001895 0.5275 5.17241
41 2Q2Y ADP 0.000301 0.46781 5.17241
42 2Q2Y MKR 0.0003251 0.46515 5.17241
43 4X8O AP5 0.002362 0.43507 5.17241
44 2RGX AP5 0.002204 0.43334 5.17241
45 2VVG ADP 0.00000009999 0.42954 5.17241
46 1ZIN AP5 0.002661 0.42771 5.17241
47 2IXE ATP 0.0005807 0.42331 5.17241
48 1CR1 TTP 0.0004729 0.41936 5.17241
49 2FAH GDP 0.0003047 0.4136 5.17241
50 1UKZ ADP 0.005911 0.40624 5.17241
51 4YS0 ADP 0.0008279 0.40306 5.17241
52 1WDT GTP 0.0000000005788 0.62834 5.71429
53 4P3Y GDP 0.0000000001719 0.56262 5.71429
54 5IFS ADP 0.00008787 0.41915 5.71429
55 2ZTS ADP 0.0007024 0.40533 5.71429
56 3KTA AP5 0.001094 0.40524 5.71429
57 4FCW ADP 0.0002899 0.40217 5.71429
58 4ZKD GDP 0.00000000005091 0.7226 5.74713
59 2RCN GDP 0.00000000001631 0.60465 5.74713
60 3MD0 GDP 0.000000000853 0.54476 5.74713
61 2WIC GNP 0.00000001434 0.53776 5.74713
62 2B8W ALF 5GP 0.000005461 0.51175 5.74713
63 1LVK MNT BEF 0.0001511 0.49183 5.74713
64 4R98 GNH 0.0000004767 0.48818 5.74713
65 1IHU ADP 0.0001083 0.45474 5.74713
66 1IHU AF3 0.00008739 0.45215 5.74713
67 2BEK ATP 0.001138 0.44099 5.74713
68 3IIJ ADP 0.000008296 0.43295 5.74713
69 4LYA ATP 0.00003688 0.43065 5.74713
70 2OZE AGS 0.0002024 0.4283 5.74713
71 5H56 TYD 0.002229 0.4197 5.74713
72 5H56 ADP 0.002229 0.4197 5.74713
73 5LTJ ADP 0.00006392 0.41625 5.74713
74 1KO8 6PG 0.0004548 0.41324 5.74713
75 1SVK ALF GDP 0.0000000011 0.67727 6.32184
76 1BH2 GSP 0.000000001122 0.67423 6.32184
77 1ZCB GDP 0.000000264 0.57068 6.32184
78 1Y3A GDP 0.0000005296 0.5461 6.32184
79 3ZFD ANP 0.00000002979 0.53383 6.32184
80 2OM2 GDP 0.000001455 0.51588 6.32184
81 1QF5 GDP 0.0003699 0.47388 6.32184
82 1QF5 RPL 0.006233 0.44841 6.32184
83 2QEN ADP 0.0001015 0.43157 6.32184
84 3BFV ADP 0.00003456 0.42218 6.32184
85 3QKT ANP 0.001092 0.4211 6.32184
86 1AZT GSP 0.0000000003213 0.6963 6.42857
87 2DPY ADP 0.00002762 0.5624 6.42857
88 3EC1 GDP 0.000000002293 0.56026 6.42857
89 2HF9 GSP 0.0000001511 0.53677 6.42857
90 1DAK DPU 0.00005745 0.50088 6.42857
91 5K5Z ANP 0.00009071 0.46409 6.42857
92 1DAK ADP 0.008847 0.43492 6.42857
93 4E03 ADP 0.00002216 0.43431 6.42857
94 1OS1 PYR 0.001283 0.4295 6.42857
95 1OS1 ATP 0.001278 0.42807 6.42857
96 2CHG ANP 0.0003157 0.41461 6.42857
97 1T5C ADP 0.000001041 0.40654 6.42857
98 3QF7 ANP 0.0009583 0.40219 6.42857
99 2FH5 GTP 0.0000000000002136 0.76104 6.48649
100 5MVR ADP 0.00004016 0.41659 6.79012
101 2XTZ GSP 0.00000000009641 0.70823 6.89655
102 1WF3 GNP 0.0000000005025 0.6826 6.89655
103 1SKQ GDP 0.000000006475 0.5266 6.89655
104 1GP2 GDP 0.000001925 0.52421 6.89655
105 5KDO GDP 0.000001846 0.51072 6.89655
106 4OHY ANP 0.00004776 0.4747 6.89655
107 4HSE ADP 0.0000319 0.4232 6.89655
108 1NRJ GTP 0.000000000081 0.6727 6.96203
109 4DCT GDP 0.0000000001048 0.59182 7.14286
110 4ZG4 VO4 ADP 0.0000004468 0.54598 7.14286
111 2WOJ ADP ALF 0.0000468 0.48269 7.14286
112 3DC4 ADP 0.0000002786 0.45944 7.14286
113 5TSH ANP 0.00001111 0.42926 7.14286
114 3FVQ ATP 0.0002901 0.42635 7.14286
115 1G6O ADP 0.00007112 0.42252 7.14286
116 2ZPA ADP 0.0002816 0.4209 7.14286
117 3LRE ADP 0.000000254 0.41993 7.14286
118 3P4X ADP 0.00001633 0.41952 7.14286
119 2Y65 ADP 0.000001213 0.41744 7.14286
120 5TSH ADP 0.00000999 0.40979 7.14286
121 2VF7 ADP 0.0001356 0.40283 7.14286
122 2WJH GDP 0.000000004726 0.55868 7.22892
123 2WJH FLC 0.0000006829 0.49347 7.22892
124 3CNL GNP 0.000000003367 0.52796 7.47126
125 2FNA ADP 0.0004472 0.45298 7.47126
126 1X6V ADP 0.0006061 0.44124 7.47126
127 5IRN ADP 0.00006284 0.43048 7.47126
128 1GOJ ADP 0.00000008684 0.42984 7.47126
129 2PZE ATP 0.000002922 0.40191 7.47126
130 3TK1 GDP 0.0000000001416 0.55093 7.85714
131 1H65 GDP 0.00001187 0.48675 7.85714
132 1FP6 ADP 0.00003735 0.43892 7.85714
133 1FNN ADP 0.0002306 0.42484 7.85714
134 1IN4 ADP 0.0003584 0.41694 7.85714
135 4R43 GDP 0.0001151 0.41017 7.85714
136 2W58 ADP 0.000000542 0.40493 7.85714
137 5XDR ADP 0.0002255 0.40023 7.85714
138 2WJG GDP 0.000000006638 0.54114 8.04598
139 2OFW ADX 0.0007118 0.45079 8.04598
140 2PEZ DAT 0.000747 0.44205 8.04598
141 2PEZ GGZ 0.000747 0.44205 8.04598
142 1E2K TMC 0.001233 0.44188 8.04598
143 4MKG AP5 0.001389 0.43968 8.04598
144 3DZD ADP 0.0002866 0.41514 8.04598
145 3NHB ADP 0.000007266 0.40572 8.04598
146 3CX8 GSP 0.0000000003571 0.69444 8.57143
147 1TAD ALF 0.0000000009478 0.67721 8.57143
148 1TAD GDP 0.0000000009478 0.67721 8.57143
149 1FQJ GDP 0.00000005291 0.58403 8.57143
150 1FQK GDP 0.0000001337 0.56929 8.57143
151 5I0H ADP BEF 0.0000001093 0.55159 8.57143
152 2XTN GTP 0.000000838 0.53752 8.57143
153 4P4T GDP 0.00000196 0.50193 8.57143
154 4WOP CTP 0.00002096 0.47014 8.57143
155 1FQJ ALF 0.00000004776 0.4691 8.57143
156 5N69 ADP 0.0000107 0.45441 8.57143
157 1FQK ALF 0.00000009966 0.44443 8.57143
158 1B7T ADP 0.00003049 0.43495 8.57143
159 1YTM ATP 0.0003091 0.42841 8.57143
160 1R0X ATP 0.0001208 0.40401 8.57143
161 5IRR GSP 0.000000002486 0.62487 8.62069
162 1PUJ GNP 0.000000002122 0.58496 8.62069
163 4XVU ATP 0.0001038 0.45677 8.62069
164 4NU0 AP5 0.001039 0.44266 8.62069
165 3COB ADP 0.0000002599 0.43466 8.62069
166 4KFU ACP 0.0000154 0.40516 8.62069
167 1KK8 BEF ADP 0.00000455 0.47601 8.63309
168 3WY9 GDP 0.0000000001003 0.56947 9.1954
169 3WYA GDP 0.0000000004989 0.56445 9.1954
170 1D2E GDP 0.0000000117 0.55697 9.1954
171 2BIF ANP 0.001143 0.43581 9.1954
172 2BIF SIN 0.00204 0.43581 9.1954
173 1AKY AP5 0.002266 0.42841 9.1954
174 4QOS ADP 0.000196 0.406 9.1954
175 2QG6 NMN 0.005664 0.40033 9.1954
176 3VMF GTP 0.00000000003398 0.72635 9.28571
177 3WXM GTP 0.00000000004552 0.72127 9.28571
178 5FG3 GDP 0.0000000000363 0.57861 9.28571
179 1G7C 5GP 0.0000002216 0.49411 9.28571
180 4PFO ADP 0.00007833 0.47176 9.28571
181 4MKF AP5 0.001993 0.43413 9.28571
182 1Y63 ADP 0.00001434 0.42811 9.28571
183 1HTW ADP 0.00003836 0.42463 9.28571
184 5GJC ATP 0.0000512 0.41187 9.28571
185 1XMV ADP 0.0001852 0.40024 9.28571
186 1F2U ATP 0.001643 0.42051 9.45946
187 4IOK ADP 0.0008626 0.43342 9.77011
188 4IOK XPO 0.0007429 0.42836 9.77011
189 2CE7 ADP 0.00008882 0.41738 9.77011
190 1BG2 ADP 0.0000003718 0.41617 9.77011
191 3DEF GDP 0.000001761 0.48661 10
192 4YDS ATP 0.000008603 0.41593 10
193 3AB3 GDP 0.00000008078 0.56145 10.3448
194 5KUT GDP 0.000000002762 0.55194 10.3448
195 1IWE IMP 0.0005614 0.49464 10.3448
196 3FWY ADP 0.00001187 0.46398 10.3448
197 4Q1A 2XZ 0.00829 0.45329 10.3448
198 4Q1A UDP 0.00829 0.45329 10.3448
199 3H86 AP5 0.0006906 0.44624 10.3448
200 1P72 ADP 0.001242 0.43295 10.3448
201 2NCD ADP 0.000001641 0.42715 10.3448
202 1OXV ANP 0.00002475 0.40705 10.3448
203 3B7G ANP 0.0002038 0.4058 10.3448
204 1R6B ADP 0.00008175 0.41727 10.7143
205 2VB6 ADP BEF 0.00002033 0.48202 10.7383
206 4J0Q GDP 0.0000000005636 0.55157 10.9195
207 4XGU ADP 0.0004133 0.41008 10.9195
208 5HR5 ADP 0.0004031 0.40895 10.9195
209 4PX9 ADP 0.00004146 0.40619 10.9195
210 4QM7 GTP 0.00003535 0.41396 11.1111
211 1YRB GDP 0.0000000001522 0.61606 11.4286
212 1JWY GDP 0.000001892 0.49048 11.4286
213 3ZQ6 ADP ALF 0.00003301 0.48879 11.4286
214 1JWY ADP 0.000009373 0.44154 11.4286
215 3FB4 AP5 0.001851 0.4344 11.4286
216 2QZ4 ADP 0.00004221 0.42955 11.4286
217 5G41 AP5 0.004002 0.4252 11.4286
218 5M7P ADP 0.000487 0.41228 11.4286
219 2C78 GNP 0.00000000001017 0.71221 11.4943
220 2C77 GNP 0.0000000000129 0.69726 11.4943
221 4D81 ADP 0.00008549 0.42632 11.4943
222 1L2T ATP 0.0009144 0.42409 11.4943
223 5VGR GDP 0.000506 0.40732 11.4943
224 3EWA ANP 0.00007189 0.40567 11.4943
225 4LPS GDP 0.0000001961 0.49978 12.069
226 1LVG ADP 0.0000008379 0.44107 12.069
227 1G41 ADP 0.00006752 0.42455 12.069
228 1OFH ADP 0.0001018 0.42016 12.069
229 2CBZ ATP 0.0000006179 0.4059 12.069
230 3FYH ADP 0.00267 0.40552 12.069
231 4NON GDP 0.0000000865 0.59514 12.1429
232 1G3Q ADP 0.00007169 0.41934 12.1429
233 1Z6T ADP 0.0001652 0.42155 12.6437
234 5LB3 ADP 0.00005945 0.40861 12.6437
235 3ZIA ADP 0.0001052 0.42506 12.6984
236 3ZIA ATP 0.00004509 0.42415 12.6984
237 2ODE ALF GDP 0.0000000005552 0.68665 12.8571
238 5GOE GDP 0.00000000533 0.55932 12.8571
239 3IO3 ADP 0.0001206 0.43709 12.8571
240 1W0J ADP 0.0000704 0.43189 12.8571
241 1W0J ADP BEF 0.0003443 0.41954 12.8571
242 1NHX FTB 0.01012 0.4069 12.8571
243 1NHX PEP 0.01088 0.40463 12.8571
244 2GMV UN8 0.004889 0.40292 12.8571
245 4OI4 ATP 0.001833 0.40753 13.0435
246 4RD0 GDP 0.000000000002449 0.73503 13.2184
247 2QN6 GDP 0.0000000002231 0.56109 13.2184
248 4LC1 GDP 0.000000001342 0.54651 13.2184
249 4TTQ ATP 0.0002074 0.40095 13.2184
250 4V03 ADP 0.00002723 0.43743 13.2296
251 2HCJ GDP 0.0000000001085 0.56679 13.5135
252 5CK5 GDP 0.00000000036 0.55967 13.5714
253 4HI0 GDP 0.0000008529 0.52297 13.5714
254 1W7J ADP BEF 0.000002587 0.48359 13.5714
255 4BFW ZVW 0.00642 0.41148 13.5714
256 5L3V GDP 0.000002961 0.47222 14.2857
257 5BQ5 ADP BEF 0.00008441 0.42255 14.3678
258 4CVN ADP 0.000006977 0.41787 14.6597
259 3FKQ ATP 0.0000429 0.44627 14.9425
260 3RLF ANP 0.0002535 0.44034 14.9425
261 2AWN ADP 0.0000001114 0.40619 14.9425
262 3T34 GDP 0.00001983 0.48494 15
263 1S3G AP5 0.002025 0.43274 15
264 2VOH CIT 0.01059 0.40173 15.2866
265 4NCN GTP 0.000000000001972 0.75092 15.7143
266 4TMZ GSP 0.000000000006417 0.73165 15.7143
267 1NY5 ADP 0.000263 0.41692 15.7143
268 1K6M AGS 0.001598 0.40942 15.7143
269 1UJ2 C5P 0.003295 0.40834 15.7143
270 1UJ2 ADP 0.004163 0.40425 15.7143
271 3H4S ADP 0.0000003793 0.42864 16.092
272 4FRZ ADP 0.000001494 0.42763 16.092
273 4XTR ATP 0.000102 0.45703 16.2162
274 4XTR ADP 0.000107 0.43951 16.2162
275 2XT3 ADP 0.0000002819 0.43131 16.4286
276 4YMU ATP 0.00002134 0.41096 16.4286
277 5X40 ACP 0.001164 0.41481 17.1429
278 1XKV ATP 0.0001437 0.41393 17.2414
279 5H68 AGS 0.001568 0.42739 17.8571
280 4NE2 SH2 0.004234 0.41584 17.8571
281 4NE2 ADP 0.003797 0.41545 17.8571
282 2V7Q ATP 0.00004561 0.42899 18
283 2CK3 ADP 0.0005391 0.4284 18
284 2CK3 ANP 0.0003717 0.41866 18
285 2V7Q ADP 0.00006701 0.4108 18
286 1NN5 ANP 0.005407 0.40529 18.3908
287 3E70 GDP 0.000003863 0.46208 18.5714
288 1SQ5 ADP 0.00008804 0.41264 18.5714
289 1P9B GDP 0.0001798 0.42834 18.9655
290 1F5N GNP 0.000005687 0.51952 19.2857
291 4BQS ADP 0.00007162 0.52632 19.5402
292 4H1V GNP 0.000002742 0.49332 19.5402
293 1V8K ANP 0.0000003799 0.48223 19.5402
294 4BQS K2Q 0.00338 0.41877 19.5402
295 5HCN GCP 0.0000000005843 0.57847 20
296 5L3R GCP 0.000001496 0.53393 20
297 2XAU ADP 0.0002791 0.40306 20
298 4B47 GDP 0.0000000000532 0.57742 20.1149
299 1ZUI SKM 0.0002693 0.46464 20.2381
300 2ZFI ADP 0.000001729 0.46091 20.6897
301 3VX3 ADP 0.00004959 0.45116 20.6897
302 1CS4 GSP 0.0000000003048 0.69433 21.4286
303 4KVA GTP 0.00006695 0.49546 21.8391
304 3T12 GDP ALF 0.000000001005 0.64111 22.4138
305 1YZG GDP 0.000000003457 0.55517 22.4138
306 5KSZ GCP 0.0000001417 0.51774 22.4138
307 5KSP GDP 0.00000007785 0.51375 22.4138
308 3T1O GDP 0.0000002227 0.51321 22.4138
309 4WZA ACP 0.00004174 0.52423 22.8571
310 4WZA ADP 0.00004174 0.52423 22.8571
311 2KIN ADP 0.0000003403 0.41665 23
312 2JLR ANP 0.0002261 0.41297 24.1379
313 3W5J GDP 0.000001922 0.42443 24.7126
314 5J1S ATP 0.001212 0.41982 25
315 5I34 GDP 0.0000598 0.425 25.2874
316 4M9Q GNP 0.000000000001755 0.74178 25.8621
317 3EZ2 ADP 0.00006131 0.40666 26.4286
318 4BAS GNP 0.0000000001447 0.67118 27.0115
319 2C04 GCP 0.00006977 0.50247 27.5862
320 1RJ9 GCP 0.00006423 0.50006 27.5862
321 2X77 GDP 0.0000000002734 0.58424 29.3103
322 5DI3 GNP 0.00000000000949 0.71563 29.8851
323 1NJF AGS 0.0002496 0.43614 29.8851
324 1NJF ADP 0.000148 0.43192 29.8851
325 1M2O GNP 0.0000000001402 0.70171 31.0345
326 1GOT GDP 0.000001519 0.52216 31.5068
327 2QTV GNP 0.0000000001285 0.69368 32.3353
328 4V0K GDP 0.0000002921 0.56127 33.1361
329 1ZD9 GDP 0.0000000009268 0.62057 33.3333
330 1ZJ6 G3D 0.000000002843 0.55737 33.908
331 3A4M ADP 0.000005685 0.42042 33.908
332 3DOE GTP 0.000000000003446 0.74335 34.4828
333 1KSH GDP 0.000000000000678 0.74257 34.4828
334 5L3S GNP 0.000008985 0.50341 35.7143
335 5L3W GDP 0.00000818 0.45947 35.7143
336 4YLG GDP 0.000000003434 0.58714 35.8382
337 2A5F GTP 0.00000000001555 0.72958 36.7816
338 3AQ4 GDP 0.000000003343 0.55562 36.7816
339 4KAX GTP 0.000000000001385 0.74607 37.2781
340 1MR3 G3D 0.00000000141 0.56657 37.3563
341 2W83 GTP 0.000000000003302 0.74411 38.1818
342 1J2J GTP 0.000000000003833 0.74124 38.5542
343 2J59 GTP 0.000000000004145 0.74034 38.5542
344 1O3Y GTP 0.000000000006412 0.73343 38.5542
345 3PCR GTP 0.00000000004179 0.70342 38.8889
346 2ZEJ GDP 0.0000004632 0.56333 39.0805
347 1F6B GDP 0.00000001961 0.53631 39.0805
348 3N5C GDP 0.000000001653 0.75539 39.5062
349 1RE0 GDP 0.0000000007158 0.5497 39.6341
350 1S9D GDP 0.000000007508 0.54449 39.6341
351 4ZI2 GNP 0.0000000000004601 0.76248 40
352 4GOJ GNP 0.0000000000005417 0.76011 40.2116
353 1FZQ GDP 0.0000000002889 0.57217 41.9889
354 3ZS9 ADP ALF 0.00003472 0.48791 42.1053
355 1UPT GTP 0.00000000000134 0.74564 43.2749
356 5EE5 GTP 0.000000000000223 0.77476 44.4444
357 1R4A GNP 0.000000000005264 0.74743 44.8485
358 3Q85 GNP 0.000000000003292 0.62161 45.5621
359 1E96 GTP 0.0000000000004114 0.80305 47.1264
360 2WKQ GTP 0.000000000001557 0.75597 47.1264
361 3REF GDP 0.00000000009067 0.67816 47.1264
362 1MH1 GNP 0.0000000000009933 0.79138 47.7011
363 2FJU GSP 0.0000000000001752 0.76366 47.7011
364 1XTQ GDP 0.000000000005284 0.73626 47.7011
365 1HE1 GDP 0.000000001181 0.69839 47.7011
366 3T5G GDP 0.00000000001582 0.63513 47.7011
367 1HE1 AF3 0.000002592 0.61583 47.7011
368 1I4D GDP 0.00000000001879 0.58987 47.7011
369 1G4U GDP 0.000000006256 0.5873 47.7011
370 1MKY GDP 0.00000000006328 0.58576 47.7011
371 2W2X GSP 0.0000000000007991 0.74006 48.2759
372 1DS6 GDP 0.00000000001166 0.60949 48.2759
373 1NF3 GNP 0.000000000002691 0.77041 48.8506
374 1RYH GNP 0.0000000000008756 0.67795 48.8506
375 4YC7 GNP 0.000000000001008 0.75077 49.4253
376 1A4R GDP 0.000000000009579 0.68966 49.4253
377 1A4R GNH 0.00000000001151 0.67454 49.4253
378 1GRN GDP 0.00000000002815 0.65784 49.4253
379 2NGR GDP 0.00000000001815 0.61988 49.4253
380 4DID GDP 0.0000000001434 0.59363 49.4253
381 4ITR GDP 0.000000005224 0.59088 49.4253
382 2NGR AF3 0.00000001774 0.49456 49.4253
383 1GRN AF3 0.00000002571 0.49066 49.4253
384 3M1I GTP 0.0000000000000554 0.8418 50
385 3WYF GTP 0.00000000000008937 0.83719 50
386 3GJX GTP 0.00000000000007472 0.83658 50
387 3WYG GTP 0.0000000000001157 0.83266 50
388 3GJ8 GDP 0.00000000001734 0.62129 50
389 3GJ5 GDP 0.00000000002181 0.61887 50
390 3GJ4 GDP 0.00000000002283 0.60117 50
391 3GJ7 GDP 0.00000000002416 0.60036 50
Pocket No.: 2; Query (leader) PDB : 3QBT; Ligand: GNP; Similar sites found: 1
This union binding pocket(no: 2) in the query (biounit: 3qbt.bio2) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3DKP ADP 0.0001125 0.40367 10
Pocket No.: 3; Query (leader) PDB : 3QBT; Ligand: GNP; Similar sites found: 2
This union binding pocket(no: 3) in the query (biounit: 3qbt.bio3) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2YOH WMJ 0.006725 0.4014 9.77011
2 2GDJ ANP 0.000154 0.40097 12.069
Pocket No.: 4; Query (leader) PDB : 3QBT; Ligand: GNP; Similar sites found: 1
This union binding pocket(no: 4) in the query (biounit: 3qbt.bio1) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3B5J 12D 0.00003783 0.40022 5.71429
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