Receptor
PDB id Resolution Class Description Source Keywords
3Q8D 2.3 Å NON-ENZYME: OTHER E. COLI RECO COMPLEX WITH SSB C-TERMINUS ESCHERICHIA COLI DNA-BINDING PROTEIN OB-FOLD RECOMBINATION INITATION RECOMINITIATION SSB DNA RECR DNA BINDING PROTEIN
Ref.: MECHANISM OF RECO RECRUITMENT TO DNA BY SINGLE-STRA BINDING PROTEIN. NUCLEIC ACIDS RES. V. 39 6305 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CPS B:600;
 Invalid;
 none;
 submit data
614.877 C32 H58 N2 O7 S C[C@H...
GOL A:800;
 Invalid;
 none;
 submit data
92.094 C3 H8 O3 C(C(C...
TYR MET ASP PHE ASP ASP ASP ILE PRO PHE E:7;
F:7;
 Valid;
Valid;
 none;
none;
 Kd = 0.34 uM
375.469 n/a O=C([...
MLT A:700;
 Invalid;
 none;
 submit data
134.087 C4 H6 O5 C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3Q8D 2.3 Å NON-ENZYME: OTHER E. COLI RECO COMPLEX WITH SSB C-TERMINUS ESCHERICHIA COLI DNA-BINDING PROTEIN OB-FOLD RECOMBINATION INITATION RECOMINITIATION SSB DNA RECR DNA BINDING PROTEIN
Ref.: MECHANISM OF RECO RECRUITMENT TO DNA BY SINGLE-STRA BINDING PROTEIN. NUCLEIC ACIDS RES. V. 39 6305 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1579 families.
1 3Q8D Kd = 0.34 uM TYR MET ASP PHE ASP ASP ASP ILE PRO PHE n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1312 families.
1 3Q8D Kd = 0.34 uM TYR MET ASP PHE ASP ASP ASP ILE PRO PHE n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1130 families.
1 3Q8D Kd = 0.34 uM TYR MET ASP PHE ASP ASP ASP ILE PRO PHE n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: TYR MET ASP PHE ASP ASP ASP ILE PRO PHE; Similar ligands found: 114
No: Ligand ECFP6 Tc MDL keys Tc
1 TYR MET ASP PHE ASP ASP ASP ILE PRO PHE 1 1
2 TRP ASP ILE PRO PHE 0.709302 0.944444
3 TRP MET ASP PHE ASP ASP ASP ILE PRO PHE 0.709302 0.944444
4 ACE PRO ALA PRO PHE 0.682927 0.857143
5 HIS PRO PHE 0.662791 0.824561
6 THR PRO PRO SER PRO PHE 0.644444 0.786885
7 ILE PRO ILE 0.6 0.941176
8 PRO PHQ PHE 0.597561 0.789474
9 DPN PRO ARG 0.582418 0.810345
10 ALA THR PRO PHE GLN GLU 0.544444 0.857143
11 ACE PRO ALA PRO TYR 0.521739 0.8
12 ALA DAL PRO PHE NIT 0.52 0.691176
13 LEU ASN PHE PRO ILE SER PRO 0.518519 0.796875
14 DPN PRO DAR ILE NH2 0.514563 0.830508
15 GLY SER ASP PRO PHE LYS 0.514286 0.770492
16 TYR PRO PHE PHE NH2 0.5 0.779661
17 PHE ASN PHE PRO GLN ILE THR 0.495652 0.822581
18 DPN PRO DAR DTH NH2 0.485714 0.734375
19 DPN PRO DAR CYS NH2 0.485437 0.737705
20 LEU GLN ARG VAL LEU SEP ALA PRO PHE 0.483871 0.704225
21 ILE ARG ALA ALA PRO PRO PRO LEU PHE 0.483871 0.796875
22 SER ASP ILE LEU PHE PRO ALA ASP SER 0.478632 0.836066
23 PHE ASN ARG PRO VAL 0.473214 0.765625
24 PHE PRO ARG 0.469388 0.775862
25 SER PRO ILE VAL PRO SER PHE ASP MET 0.468254 0.761194
26 PHE LEU PRO SER ASP PHE PHE PRO SER VAL 0.466102 0.769231
27 LEU PRO SER PHE GLU THR ALA LEU 0.46281 0.806452
28 MIN 0.462366 0.785714
29 LYS GLN GLU PRO GLN GLU ILE ASP PHE 0.460938 0.910714
30 PHE GLN PRO GLN ASN GLY GLN PHE ILE 0.459677 0.85
31 TRP PRO TRP 0.459184 0.824561
32 ALA PHE ARG ILE PRO LEU THR ARG 0.456693 0.761194
33 SIN ALA ALA PRO PHE NIT 0.45614 0.710145
34 TYR PRO ASN VAL ASN ILE HIS ASN PHE 0.454545 0.75
35 ARG ARG LEU PRO ILE PHE SER ARG LEU 0.453125 0.761194
36 ILE THR ASP GLN VAL PRO PHE SER VAL 0.453125 0.822581
37 ASP TYR GLU PRO ILE PRO GLU GLU ALA PHE 0.450382 0.809524
38 GLU PHE SER PRO 0.44898 0.810345
39 ARG PRO PRO ILE PHE ILE ARG ARG LEU 0.448819 0.809524
40 SIN ALA LEU PRO PHE NIT 0.444444 0.7
41 AZL 0.441176 0.774194
42 PRO ALA PRO PHE ALA ALA ALA 0.440367 0.839286
43 06P 0.43956 0.775862
44 P05 0.43956 0.754386
45 ILE MET ASP GLN VAL PRO PHE SER VAL 0.439394 0.784615
46 ALA GLU GLY PHE PRO ALA TPO VAL 0.439252 0.734375
47 ACE PHE HIS PRO ALA NH2 0.439252 0.79661
48 01B PRO PRO ALA NH2 0.438776 0.762712
49 MAA LYS PRO PHE 0.438095 0.854545
50 ALA VAL PRO TRP 0.438095 0.844828
51 GLN LEU SER PRO PHE PRO PHE ASP LEU 0.432 0.78125
52 LYS PRO LYS 0.431818 0.849057
53 51U 0.430108 0.8
54 ACE PHE PRO PRO PRO PRO THR 0.428571 0.763636
55 LYS PRO PHE PTR VAL ASN VAL GLU PHE 0.427536 0.671233
56 LEU PHE GLY TYR PRO VAL TYR VAL 0.427419 0.806452
57 ALA VAL PRO ILE 0.426966 0.90566
58 ASP PHE GLU GLU ILE PRO GLU GLU TYS 0.426357 0.662338
59 PRO ALA PRO PHE ALA SER ALA 0.426087 0.786885
60 ASN TRP SER HIS PRO GLN PHE GLU LYS 0.426087 0.707692
61 37U 0.425532 0.728814
62 LEU PRO PHE ASP LYS THR THR ILE MET 0.425373 0.772727
63 SER VAL PRO ILE 0.423913 0.830508
64 PHE GLU ALA ILE PRO ALA GLU TYR LEU 0.423077 0.836066
65 ALA VAL PRO ILE ALA GLN LYS SER GLU 0.422222 0.867925
66 ALA VAL PRO ILE ALA GLN LYS 0.422222 0.867925
67 LYS THR PHE PRO PRO THR GLU PRO LYS 0.421875 0.790323
68 LYS PRO ILE VAL GLN TYR ASP ASN PHE 0.42029 0.761194
69 LEU PRO PHE ASP ARG THR THR ILE MET 0.42029 0.708333
70 ALA PRO THR 0.419753 0.803571
71 ALA ASN SER ARG PHE PRO THR SER ILE ILE 0.419118 0.75
72 PHE TYR ALA PRO GLU PRO ILE THR SER LEU 0.419118 0.73913
73 MDL 0.418182 0.666667
74 ILE PRO LEU THR GLU GLU ALA GLU LEU 0.417391 0.816667
75 LEU TYR ALA SER PRO GLN LEU GLU GLY PHE 0.417266 0.769231
76 10P 0.416667 0.75
77 P97 0.416667 0.671875
78 N6L 0.416667 0.716667
79 DHI PRO PHE HIS LEU LEU VAL TYR 0.416058 0.78125
80 LYS PRO PHE PTR VAL ASN VAL NH2 0.415385 0.657534
81 ACE GLY PHE GLY VAL VAL PRO SER PHE TYR 0.415254 0.758065
82 B04 0.414894 0.75
83 99P 0.414894 0.741379
84 LEU PRO PHE ASP LYS SER THR ILE MET 0.414286 0.761194
85 GLY PHE GLU PRO 0.414141 0.87037
86 ACE GLU HIS PHE ILE VAL PRO ASP LEU TYR 0.413534 0.819672
87 TYR MET PHE PRO ASN ALA PRO TYR LEU 0.413534 0.704225
88 GLY PHE ARG PRO 0.413462 0.783333
89 LYS LEU PRO ALA GLN PHE TYR ILE LEU 0.413043 0.809524
90 GLY GLN VAL PRO PHE SER LYS GLU GLU CYS 0.412214 0.765625
91 ALA CYS SEP PRO GLN PHE GLY 0.41129 0.701493
92 MAA LPH PRO PHE 4LZ 0.410853 0.680556
93 22U 0.410526 0.728814
94 32U 0.410526 0.745763
95 B03 0.410526 0.754386
96 ARG THR PHE SER PRO THR TYR GLY LEU 0.408759 0.684932
97 PPX 0.408163 0.693548
98 THR LYS PRO ARG 0.408163 0.762712
99 0G6 0.407767 0.71875
100 LEU LEU PHE GLY TYR PRO VAL TYR VAL 0.407692 0.806452
101 ILE PRO ALA TYR GLY VAL LEU THR ILE 0.407692 0.809524
102 ARG SEP PRO VAL PHE SER 0.407692 0.676056
103 LEU LEU PHE GLY PHE PRO VAL TYR VAL 0.407692 0.806452
104 PHE SER ALA PTR PRO SER GLU GLU ASP 0.406504 0.652778
105 1IP CYS PHE SER LYS PRO ARG 0.406015 0.685714
106 ARG PRO PRO GLY PHE SER PRO PHE ALA 0.406015 0.681159
107 VAL ORN LEU DPN PRO VAL ORN LEU DPN PRO 0.404959 0.813559
108 98P 0.40404 0.681818
109 B01 0.402062 0.693548
110 ALA PRO GLN PRO ALA PRO GLU ASN ALA TYR 0.401575 0.765625
111 LEU PRO PHE GLU LYS SER THR VAL MET 0.40146 0.746269
112 LEU PRO PHE GLU ARG ALA THR ILE MET 0.4 0.71831
113 TYR GLN PHE GLY PRO ASP PHE PRO ILE ALA 0.4 0.796875
114 TYR SEP PRO THR SEP PRO SER 0.4 0.676056
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
Feedback