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Receptor
PDB id Resolution Class Description Source Keywords
3PQC 1.9 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME BIOGENESIS BINDING PROTEIN ENGB (YSXC/YIHA) IN COMPLEX WITH GDP THERMOTOGA MARITIMA ROSSMANN FOLD GTPASE GTP BINDING CELL CYCLE HYDROLASE
Ref.: STRUCTURE OF AN ESSENTIAL GTPASE, YSXC, FROM THERMO MARITIMA ACTA CRYSTALLOGR.,SECT.F V. 67 640 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:801;
B:802;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
PEG A:196;
B:196;
Invalid;
Invalid;
none;
none;
submit data
106.12 C4 H10 O3 C(COC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3PQC 1.9 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME BIOGENESIS BINDING PROTEIN ENGB (YSXC/YIHA) IN COMPLEX WITH GDP THERMOTOGA MARITIMA ROSSMANN FOLD GTPASE GTP BINDING CELL CYCLE HYDROLASE
Ref.: STRUCTURE OF AN ESSENTIAL GTPASE, YSXC, FROM THERMO MARITIMA ACTA CRYSTALLOGR.,SECT.F V. 67 640 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 3PQC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 3PQC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 1SVI - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3PQC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3PQC; Ligand: GDP; Similar sites found with APoc: 663
This union binding pocket(no: 1) in the query (biounit: 3pqc.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 3Q72 GNP None
2 3RAB GNP None
3 1Z0K GTP None
4 1X1R GDP None
5 1G16 GDP None
6 2BME GNP None
7 3X1Z GNP None
8 3TMK T5A None
9 6FHQ DE5 None
10 6AIC AMP None
11 2IL4 COA None
12 1BO4 COA None
13 4WOP CTP 1.33333
14 3QBT GNP 1.42857
15 5U32 GDP 1.53846
16 4Q1A UDP 1.53846
17 4Q1A 2XZ 1.53846
18 2QG6 NMN 1.53846
19 3P4X ADP 1.53846
20 1JJ7 ADP 1.53846
21 1W4R TTP 1.53846
22 2ZE7 DST 1.53846
23 2ZE7 AMP 1.53846
24 1OW3 GDP 1.5544
25 6BCB GSP 1.62162
26 2ZEJ GDP 1.63043
27 1TX4 ALF GDP 1.69492
28 1KAO GDP 1.79641
29 1M7G AV2 2.05128
30 4AG5 ADP 2.05128
31 4TL6 ANP 2.05128
32 1M7G ADX 2.05128
33 1M7G ADP 2.05128
34 5G3Y ADP 2.05128
35 3DC4 ADP 2.05128
36 1Z6T ADP 2.05128
37 2CHG ANP 2.05128
38 3ITJ CIT 2.05128
39 1T8U UAP SGN IDS SGN 2.05128
40 1T8U A3P 2.05128
41 3MGB PAP 2.05128
42 2R75 01G 2.05128
43 1ZUI SKM 2.38095
44 5MVR ADP 2.46914
45 2XTZ GSP 2.5641
46 1DAR GDP 2.5641
47 5GVR LMR 2.5641
48 4ZNL BEF ADP 2.5641
49 4BFW ZVW 2.5641
50 1T5C ADP 2.5641
51 4NU0 AP5 2.5641
52 3DZD ADP 2.5641
53 1VHT BA3 2.5641
54 4GBM A3P 2.5641
55 5WRJ A3P 2.5641
56 5WRI A3P 2.5641
57 3L6C MLI 2.5641
58 2XZ9 PYR 2.5641
59 2A5J GDP 2.6178
60 1Z0A GDP 2.87356
61 4HDO GNP 3.07692
62 2F9L GDP 3.07692
63 5H7K GDP 3.07692
64 5H7J GCP 3.07692
65 5LB3 ADP 3.07692
66 4HSE ADP 3.07692
67 1P72 ADP 3.07692
68 4OHY ANP 3.07692
69 2D2F ADP 3.07692
70 4R43 GDP 3.07692
71 2GKS ADP 3.07692
72 5IRN ADP 3.07692
73 5EXT ADP 3.07692
74 1IN4 ADP 3.07692
75 3FB4 AP5 3.07692
76 4X8O AP5 3.07692
77 1AKY AP5 3.07692
78 1JI0 ATP 3.07692
79 6B8B ADP 3.07692
80 4PX9 ADP 3.07692
81 3RC3 ANP 3.07692
82 1HTW ADP 3.16456
83 1KO8 6PG 3.42857
84 5CK5 GDP 3.58974
85 1GWN GTP 3.58974
86 5W76 GDP 3.58974
87 3UIE ANP 3.58974
88 3ZS9 ADP ALF 3.58974
89 2WOJ ADP ALF 3.58974
90 4XTR ADP 3.58974
91 4XTR ATP 3.58974
92 1X6V ADP 3.58974
93 4XVU ATP 3.58974
94 2OFW ADX 3.58974
95 1G6O ADP 3.58974
96 3ZFD ANP 3.58974
97 2C9O ADP 3.58974
98 4XGU ADP 3.58974
99 5G41 AP5 3.58974
100 2QZ4 ADP 3.58974
101 3BFV ADP 3.58974
102 2OZE AGS 3.58974
103 3FYH ADP 3.58974
104 3EWA ANP 3.58974
105 1ION ADP 3.58974
106 1G3Q ADP 3.58974
107 4ZDJ UTP 3.58974
108 4IDN GNP 3.58974
109 2D7D ADP 3.58974
110 1OE0 TTP 3.58974
111 3QVV 3QV 3.58974
112 3QVV A3P 3.58974
113 4KBF AMP 3.58974
114 2J5V PCA 3.58974
115 3BD9 A3P 3.58974
116 4A4Z ANP 3.58974
117 3LXR GDP 3.64583
118 4XOI GTP 3.7037
119 1M7B GTP 3.80435
120 2PEZ GGZ 3.91061
121 2PEZ DAT 3.91061
122 2CDN ADP 3.9801
123 3VMF GTP 4.10256
124 1D2E GDP 4.10256
125 4LPS GDP 4.10256
126 1H65 GDP 4.10256
127 1BH2 GSP 4.10256
128 1RJ9 GCP 4.10256
129 3FWY ADP 4.10256
130 2FNA ADP 4.10256
131 2IYL GDP 4.10256
132 5M7P ADP 4.10256
133 3BOS CDP 4.10256
134 2ZTS ADP 4.10256
135 2NCD ADP 4.10256
136 2BIF SIN 4.10256
137 2BIF ANP 4.10256
138 5VHC BEF ADP 4.10256
139 4TTQ ATP 4.10256
140 5X40 ACP 4.10256
141 5TIV A3P 4.10256
142 6C90 ADP 4.10256
143 2GDJ ANP 4.10256
144 1SVK ALF GDP 4.10256
145 5E5U MLI 4.10256
146 2JAQ DCP 4.10256
147 2VBQ BSJ 4.24242
148 1GXU 2HP 4.3956
149 4H1V GNP 4.60705
150 4J0Q GDP 4.61538
151 1SKQ GDP 4.61538
152 5W7Q GDP 4.61538
153 2WHX ADP 4.61538
154 5L3V GDP 4.61538
155 5BN3 ADP 4.61538
156 1IHU ADP 4.61538
157 1DAK ADP 4.61538
158 1DAK DPU 4.61538
159 1IHU AF3 4.61538
160 3DKP ADP 4.61538
161 5LTJ ADP 4.61538
162 2IS6 ADP 4.61538
163 5Z69 AGS 4.61538
164 1W5T ANP 4.61538
165 5Y6N ADP 4.61538
166 2XAU ADP 4.61538
167 2JLR ANP 4.61538
168 5LTJ BEF 4.61538
169 1W5T ADP 4.61538
170 1NST A3P 4.61538
171 1X8J A3P 4.61538
172 4YLG GDP 4.62428
173 3KTA AP5 4.62428
174 1Z0J GTP 4.70588
175 1YVD GNP 4.73373
176 5J1S ATP 4.87805
177 4UXH T5A 4.8913
178 2PZE ATP 5.12821
179 5XKT GNP 5.12821
180 4LYA ATP 5.12821
181 1OFH ADP 5.12821
182 4JLV ADP 5.12821
183 1G41 ADP 5.12821
184 1S3G AP5 5.12821
185 4WZ6 ATP 5.12821
186 4TMK T5A 5.12821
187 1OYY AGS 5.12821
188 3GD8 GOL 5.12821
189 5MEX SZZ 5.12821
190 5MEX PAP 5.12821
191 3HY2 ATP 5.45455
192 3IIJ ADP 5.55556
193 4D0N GDP 5.64103
194 2XT3 ADP 5.64103
195 2W58 ADP 5.64103
196 2OBM ADP 5.64103
197 1E2K TMC 5.64103
198 3ZQ6 ADP ALF 5.64103
199 1QF5 GDP 5.64103
200 1QF5 RPL 5.64103
201 4PFO ADP 5.64103
202 2Q2Y MKR 5.64103
203 2Q2Y ADP 5.64103
204 4FCW ADP 5.64103
205 6B4K ANP 5.64103
206 4LJ9 ACP 5.64103
207 2ZPT A3P 5.64103
208 2Z5F A3P 5.64103
209 4QRH 0O2 5.64103
210 1AQU A3P 5.64103
211 4IEE AGS 5.64103
212 1ZC3 GNP 5.71429
213 1UAD GNP 5.71429
214 1Z06 GNP 5.82011
215 1TU3 GNP 5.84795
216 1R2Q GNP 5.88235
217 3MJH GTP 5.95238
218 1U8Z GDP 5.95238
219 6BC0 GSP 6
220 4KVG GTP 6.15385
221 1GP2 GDP 6.15385
222 1UJ2 ADP 6.15385
223 5FHD ADP ALF 6.15385
224 1UJ2 C5P 6.15385
225 3FVQ ATP 6.15385
226 5FTB ANP 6.15385
227 2CE7 ADP 6.15385
228 3HU3 AGS 6.15385
229 3VX3 ADP 6.15385
230 2GWH A3P 6.15385
231 1VKJ A3P 6.15385
232 1QF9 ADP 6.18557
233 1QF9 C5P 6.18557
234 1QF9 ALF 6.18557
235 4LHW GNP 6.32184
236 4RD0 GDP 6.66667
237 5TSH ADP 6.66667
238 5TSH ANP 6.66667
239 3B5J 12D 6.66667
240 3QXC ATP 6.66667
241 1L2T ATP 6.66667
242 1R0X ATP 6.66667
243 2PL3 ADP 6.66667
244 4V03 ADP 6.66667
245 4D81 ADP 6.66667
246 1OS1 ATP 6.66667
247 1OS1 PYR 6.66667
248 1XKV ATP 6.66667
249 1UKZ ADP 6.66667
250 3QKT ANP 6.66667
251 3IUY AMP 6.66667
252 4MKG AP5 6.91244
253 2QQ0 ANP 7.06522
254 2QQ0 ADP 7.06522
255 2QQ0 TMP 7.06522
256 2QQ0 THM 7.06522
257 2G77 GDP 7.17949
258 4ZKD GDP 7.17949
259 2B8W ALF 5GP 7.17949
260 1IWE IMP 7.17949
261 3IO3 ADP 7.17949
262 1YTM ATP 7.17949
263 5ZB0 TYD 7.17949
264 5ZB0 ADP 7.17949
265 3RLF ANP 7.17949
266 4ZG4 VO4 ADP 7.17949
267 5VGR GDP 7.17949
268 2ZR9 DTP 7.17949
269 6A20 ADP 7.17949
270 2AWN ADP 7.17949
271 1F5N GNP 7.17949
272 1JJV ATP 7.17949
273 1Z83 AP5 7.17949
274 4RZ3 ADP 7.17949
275 2ZPA ADP 7.17949
276 1FNN ADP 7.17949
277 2G77 AF3 7.17949
278 5LLB 6YZ 7.17949
279 2ORV 4TA 7.17949
280 1G3M A3P 7.17949
281 1G3M PCQ 7.17949
282 2B8T THM 7.17949
283 1PZL MYR 7.17949
284 5MW4 5JU 7.17949
285 3FS1 MYR 7.17949
286 1WG8 SAM 7.17949
287 3QWI NAP 7.17949
288 6BCA GSP 7.28477
289 6BSX GDP 7.30337
290 6BSX E7S 7.30337
291 1XX6 ADP 7.32984
292 1UPT GTP 7.60234
293 3AQ4 GDP 7.6087
294 4U00 ADP 7.69231
295 1V8K ANP 7.69231
296 5AK0 8V1 7.69231
297 3FKQ ATP 7.69231
298 1K6M AGS 7.69231
299 4QM7 GTP 7.69231
300 2RGX AP5 7.69231
301 5IFS ADP 7.69231
302 3Q9L ATP 7.69231
303 1G6H ADP 7.69231
304 2O0J ADP 7.69231
305 3TBK ANP 7.69231
306 5XDR ADP 7.69231
307 4YJ1 ADP 7.69231
308 2CZL TLA 7.69231
309 3E5H GNP 7.86517
310 5H67 ATP 7.97872
311 1D5C GDP 8.02469
312 1MH1 GNP 8.06452
313 1CXZ GSP 8.13953
314 2FFQ GSP 8.18713
315 1VG0 GDP 8.20513
316 5HPY GDP 8.20513
317 3WXM GTP 8.20513
318 3COB ADP 8.20513
319 1VG8 GNP 8.20513
320 2FAH GDP 8.20513
321 1NY5 ADP 8.20513
322 1R6B ADP 8.20513
323 3KJI ADP 8.20513
324 5I0H ADP BEF 8.20513
325 3DOE GTP 8.33333
326 3H86 AP5 8.33333
327 2A5F GTP 8.57143
328 1KSH GDP 8.60215
329 2QN6 GDP 8.60215
330 1GUA GNP 8.64198
331 3GJ4 GDP 8.71795
332 3GJ7 GDP 8.71795
333 5BXQ GDP 8.71795
334 3GJ5 GDP 8.71795
335 5UWI GNP 8.71795
336 5UWU GNP 8.71795
337 5DIF GNP 8.71795
338 3GJ0 GDP 8.71795
339 5UWQ GNP 8.71795
340 5UWP GNP 8.71795
341 5UWR GNP 8.71795
342 6CIT GNP 8.71795
343 5UWH GNP 8.71795
344 5UWO GNP 8.71795
345 5UWJ GNP 8.71795
346 5UWW GNP 8.71795
347 4HAT GNP 8.71795
348 5DHF GNP 8.71795
349 5UWT GNP 8.71795
350 3GJ8 GDP 8.71795
351 5UWS GNP 8.71795
352 3GJ3 GDP 8.71795
353 3CH5 GDP 8.71795
354 1TAD ALF 8.71795
355 1TAD GDP 8.71795
356 1FQK GDP 8.71795
357 4HI0 GDP 8.71795
358 4IHQ ADP 8.71795
359 1IBR GNP 8.71795
360 5DI9 GNP 8.71795
361 1FQJ GDP 8.71795
362 1GOJ ADP 8.71795
363 5N69 ADP 8.71795
364 4YMU ATP 8.71795
365 1ZCB GDP 8.71795
366 5BYK OAQ 8.71795
367 5BYK A3P 8.71795
368 1U0J ADP 8.71795
369 4R2I ANP 8.71795
370 1FQK ALF 8.71795
371 1FQJ ALF 8.71795
372 5EE5 GTP 8.77193
373 1YZQ GNP 8.82353
374 1MR3 G3D 8.83978
375 4KAX GTP 8.87574
376 1R4A GNP 9.09091
377 1VG1 GDP 9.18919
378 1VG9 GDP 9.18919
379 1LFD GNP 9.1954
380 5IRC GDP 9.23077
381 5GOE GDP 9.23077
382 3TNF GNP 9.23077
383 4NE2 ADP 9.23077
384 4NE2 SH2 9.23077
385 2CBZ ATP 9.23077
386 2YOH WMJ 9.23077
387 4PPF FLC 9.23077
388 4WEI GLC GAL 9.23077
389 4IOK XPO 9.23077
390 4IOK ADP 9.23077
391 1Q20 PLO 9.23077
392 1Q20 A3P 9.23077
393 4ARU TLA 9.23077
394 3N5C GDP 9.25926
395 3PCR GTP 9.25926
396 2KIN ADP 9.74359
397 3TK1 GDP 9.74359
398 3MD0 GDP 9.74359
399 3E70 GDP 9.74359
400 5I34 GDP 9.74359
401 5H68 AGS 9.74359
402 1Y63 ADP 9.78261
403 5WDR GNP 9.94152
404 2X77 GDP 10.0529
405 4DKX GDP 10.2564
406 5JCP GDP ALF 10.2564
407 5L3W GDP 10.2564
408 5L3S GNP 10.2564
409 6DEF GCP 10.2564
410 3B7G ANP 10.2564
411 5K5Z ANP 10.2564
412 2BEK ATP 10.2564
413 5K04 COA 10.2564
414 5L3S G 10.2564
415 3REF GDP 10.3093
416 4V0K GDP 10.6509
417 3CPJ GDP 10.7692
418 3M1I GTP 10.7692
419 4LC1 GDP 10.7692
420 2EFE GNH 10.7692
421 3WYF GTP 10.7692
422 2BCG GDP 10.7692
423 5HR5 ADP 10.7692
424 3EZ2 ADP 10.7692
425 1SVM ATP 10.7692
426 1RRC ADP 10.7692
427 5KUT GDP 11.1111
428 2Y8E GNP 11.1732
429 2OG2 MLI 11.2821
430 2QEN ADP 11.2821
431 3B9Q MLI 11.2821
432 1CR1 TTP 11.2821
433 2GK6 ADP 11.2821
434 5L3R GCP 11.2821
435 6FAA ADP 11.2821
436 2F3R G5P 11.2821
437 1WA5 GTP 11.3636
438 3WYG GTP 11.5385
439 1XEX ATP 11.6279
440 1SQ5 ADP 11.7949
441 1BG2 ADP 11.7949
442 6CS8 F9Y 11.7949
443 1NJF AGS 11.7949
444 1NHX FTB 11.7949
445 1NHX PEP 11.7949
446 2GMV UN8 11.7949
447 2GMV PEP 11.7949
448 1YQT ADP 11.7949
449 1NJF ADP 11.7949
450 5YV5 ADP 11.7949
451 5MZN ADP 11.7949
452 1S8F GDP 11.8644
453 5UIV ADP 11.8943
454 3BER AMP 12.0482
455 3ZIA ATP 12.3077
456 3ZIA ADP 12.3077
457 2DPY ADP 12.3077
458 6AMI TRP 12.3077
459 4BQS ADP 12.5
460 4BQS K2Q 12.5
461 5UQW GDP 12.6984
462 2VB6 ADP BEF 12.7517
463 1ZD9 GDP 12.766
464 1TQ4 GDP 12.8205
465 4XSH GSP 12.8205
466 2XTN GTP 12.8205
467 1LVG ADP 12.8205
468 6AU6 GDP 12.8205
469 1G7C 5GP 12.8205
470 1NN5 ANP 12.8205
471 1NN5 2DT 12.8205
472 4E03 ADP 12.8205
473 2IXE ATP 12.8205
474 2FSH ANP 12.8205
475 5TAR GDP 12.973
476 5TB5 GDP 12.973
477 3A4M ADP 13.0769
478 5OCG GNP 13.2275
479 1RYH GNP 13.3333
480 3EC1 GDP 13.3333
481 6H5E ANP 13.3333
482 2X7I CIT 13.3333
483 1F2U ATP 13.4228
484 2NGR GDP 13.6126
485 1GRN GDP 13.6126
486 1A4R GNH 13.6126
487 4ITR GDP 13.6126
488 1A4R GDP 13.6126
489 5XC5 GTP 13.6364
490 5LEF GTP 13.6364
491 1WDT GTP 13.8462
492 4QOS ADP 13.8462
493 4YDS ATP 13.8462
494 3DDC GNP 13.8554
495 2C5L GTP 13.8728
496 6FA4 GNP 13.8728
497 1G4U GDP 14.1304
498 5O2T GSP 14.2012
499 5E95 GDP 14.2857
500 1G7S GDP 14.359
501 1PUJ GNP 14.359
502 1W7J ADP BEF 14.359
503 5ZBR ANP 14.359
504 2HF9 GSP 14.359
505 6D5V GNP 14.3713
506 6BVK GNP 14.3713
507 6D5H GNP 14.3713
508 6D59 GNP 14.3713
509 6D56 GNP 14.3713
510 6D5L GNP 14.3713
511 6BVJ GNP 14.3713
512 6BVI GNP 14.3713
513 6D5G GNP 14.3713
514 6BVL GNP 14.3713
515 6D5J GNP 14.3713
516 6D55 GNP 14.3713
517 6D5E GNP 14.3713
518 6D5M GNP 14.3713
519 6BVM GNP 14.3713
520 1CLU DBG 14.4578
521 5WLB GNP 14.4578
522 3KUD GDP 14.4578
523 1WQ1 GDP 14.4578
524 2UZI GTP 14.4578
525 1NVV GNP 14.4578
526 4OI4 ATP 14.7826
527 2WMO GTP 14.8718
528 4K81 GTP 14.8718
529 1F9V ADP 14.8718
530 1ZIN AP5 14.8718
531 4HDQ GNP 15.3846
532 6G14 G4P 15.3846
533 1CS4 GSP 15.3846
534 4R98 GNH 15.3846
535 2ZFI ADP 15.3846
536 4YS0 ADP 15.3846
537 2W83 GTP 15.5844
538 1B0U ATP 15.6489
539 2RCN GDP 15.8974
540 3CNL GNP 15.8974
541 3GJX GTP 15.8974
542 1B7T ADP 16.0256
543 1KK8 BEF ADP 16.2338
544 2HV8 GTP 16.2791
545 4MKF AP5 16.4103
546 3BFX A3P 16.4103
547 5J1J ANP 16.4103
548 2ZJ5 ADP 16.4103
549 3WY9 GDP 16.5899
550 3WYA GDP 16.5899
551 1DS6 GDP 16.6667
552 4DID GDP 16.9231
553 5IRR GSP 16.9231
554 1OXV ANP 16.9231
555 3SBD GNP 17.1123
556 1OIV GDP 17.2775
557 2W2X GSP 17.2973
558 5UPK GNP 17.4359
559 1NF3 GNP 17.4359
560 2HCJ GDP 17.4359
561 4GOX A3P 17.4359
562 5JCZ GDP 17.8771
563 4LX0 BEF GDP 18.0791
564 4YC7 GNP 18.232
565 1XPJ TLA 18.254
566 1FP6 ADP 18.4615
567 4C4P GNP 18.4971
568 4NCN GTP 18.9744
569 4TMZ GSP 18.9744
570 4CVN ADP 19.3717
571 3DEF GDP 19.4872
572 4KFU ACP 19.4872
573 2V7Q ATP 19.4872
574 2CK3 ANP 19.4872
575 1W0J ADP 19.4872
576 1P9B GDP 19.4872
577 2V7Q ADP 19.4872
578 1D2N ANP 19.4872
579 1W0J ADP BEF 19.4872
580 2CK3 ADP 19.4872
581 1Z0N BCD 19.7917
582 3LRE ADP 20
583 1NRJ GTP 20.5128
584 3T34 GDP 21.0256
585 1GOT GDP 21.0256
586 1Z08 GNP 21.1765
587 1I4D GDP 22.3958
588 4KVA GTP 22.5641
589 2VVG ADP 22.5641
590 5YT0 GDP 23.0769
591 5FG3 GDP 23.0769
592 2WKQ GTP 23.5897
593 5HCN GCP 23.5897
594 2C78 GNP 23.5897
595 2C77 GNP 23.5897
596 1E96 GTP 23.9583
597 2FJU GSP 24.1573
598 1HE1 GDP 24.4318
599 4WZA ADP 24.6154
600 4WZA ACP 24.6154
601 2OM2 GDP 25
602 5SZH GNP 25.1282
603 3TKL GTP 25.1282
604 2Y65 ADP 25.641
605 1LVK MNT BEF 25.641
606 3U6B GDP 26.1538
607 5JBQ GDP 26.1538
608 4G5G GDP 26.1538
609 1D8T GDP 26.1538
610 4P3Y GDP 26.1538
611 3U6K GDP 26.1538
612 2BVN GNP 26.1538
613 4PC3 GDP 26.1538
614 5O74 GDP 26.6667
615 3SFV GDP 27.0718
616 3NKV GNP 28
617 4M9Q GNP 28.2051
618 3T12 GDP ALF 28.2051
619 3T1O GDP 28.2051
620 5WC2 ADP 28.2051
621 1KK1 GNP 28.7179
622 5OEC GDP 28.9617
623 1Z2A GDP 29.1667
624 5KSZ GCP 29.2308
625 5KSP GDP 30
626 1M2O GNP 30.5263
627 2FH5 GTP 30.7692
628 2A9K GDP 31.016
629 1F6B GDP 32.8205
630 5W75 GDP 33.3333
631 5W75 SUC 33.3333
632 1WF3 GNP 33.8462
633 1OIX GDP 34.359
634 2QTV GNP 34.7305
635 2WIC GNP 34.8718
636 4BAS GNP 35.3846
637 1Z0F GDP 35.7542
638 4D0G GTP 36
639 4NON GDP 36.4103
640 5DI3 GNP 37.2973
641 1ZJ6 G3D 37.4332
642 1YZN GNP 37.4359
643 1YZG GDP 38.5475
644 3W5J GDP 38.9744
645 2WJG GDP 39.3617
646 4ZI2 GNP 39.4737
647 2D7C GTP 39.521
648 1KMQ GNP 39.6739
649 4GOJ GNP 39.6825
650 4B47 GDP 40
651 3A1S GDP 41.0256
652 1FZQ GDP 41.4365
653 3BC1 GNP 41.5385
654 2EW1 GNP 42.5641
655 1RE0 GDP 43.9024
656 1S9D GDP 43.9024
657 1J2J GTP 43.9759
658 1O3Y GTP 43.9759
659 2J59 GTP 43.9759
660 2GJ8 ALF GDP 44.186
661 2WJH GDP 44.5783
662 2WJH FLC 44.5783
663 5M04 GDP 48.7179
664 1Y3A GDP 50
Pocket No.: 2; Query (leader) PDB : 3PQC; Ligand: GDP; Similar sites found with APoc: 104
This union binding pocket(no: 2) in the query (biounit: 3pqc.bio2) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 4K26 NDP None
2 4K26 SFF None
3 2X6T NAP 1.02564
4 4KOT CE3 1.85185
5 1H9A NAP 2.05128
6 1S7N COA 2.1978
7 1KUV CA5 2.5641
8 2WPW ACO 2.5641
9 1GHE ACO 2.82486
10 2JEV NHQ 2.87356
11 2B4D COA 2.92398
12 1CJW COT 3.01205
13 5VN0 FAD 3.07692
14 2WW4 ADP 3.07692
15 4UTG ANP 3.07692
16 4QDI ATP 3.07692
17 2JDC CAO 3.42466
18 2R42 FPS 3.5443
19 4IXH IMP 3.58974
20 2V2V V12 3.58974
21 4X1Z FUC GAL NDG 3.58974
22 6BA2 7KM 3.58974
23 5BRE 4UZ 3.58974
24 1ZRH A3P 3.58974
25 2VWT PYR 3.58974
26 4QC6 30N 3.91061
27 4R3L COA 4.04624
28 5HGZ ACO 4.10256
29 5HH0 COA 4.10256
30 4H6U ACO 4.10256
31 5EP2 AZU 4.29688
32 2CNT COA 4.375
33 4E5N NAD 4.61538
34 5GLN XYP XYP XYP 4.61538
35 5GLN XYS 4.61538
36 1W5F G2P 5.12821
37 2VOS ADP 5.12821
38 3R96 ACO 5.31915
39 3R96 AMP 5.31915
40 4W93 3L9 5.64103
41 3TO7 COA 5.64103
42 4KVX ACO 5.76923
43 5H86 BCO 5.95238
44 5AHM IMP 6
45 4ITM ATP 6.15385
46 4TM3 FAD 6.15385
47 5BUK FAD 6.15385
48 3D2M COA 6.15385
49 4CM4 NAP 6.15385
50 3JQF NAP 6.15385
51 4CM9 NAP 6.15385
52 4CME NAP 6.15385
53 1WWZ ACO 6.28931
54 1J99 AND 6.66667
55 5KF9 ACO 6.66667
56 4DXD 9PC 6.66667
57 5X8G S0N 6.66667
58 1PUA COA 6.74847
59 1QSN COA 6.79012
60 1Q2D COA 6.79012
61 3WR7 COA 7.05882
62 3X0D SAH 7.17949
63 2ZPA ACO 7.17949
64 4HUT ATP 7.32984
65 2VHJ ADP 7.69231
66 3EWC MCF 7.69231
67 2P3V SRT 8.20513
68 4AVB ACO 8.20513
69 5AHO TLA 8.20513
70 4NSQ COA 8.42105
71 1QHH ATP 8.87574
72 5XXS COA 9.09091
73 1QHG ATP 9.23077
74 2C6Q NDP 9.23077
75 2VZZ SCA 9.23077
76 1CM0 COA 9.52381
77 2I4I AMP 9.74359
78 2JJK R15 9.74359
79 6G28 AR6 9.74359
80 5LS7 ACO 10.219
81 4PSW COA 10.2564
82 3H4V NAP 10.2564
83 1BOB ACO 10.2564
84 1GQY ACP 10.2564
85 3F8K COA 10.625
86 1Q19 APC 10.7692
87 1JBW ACQ 10.7692
88 1P3D ANP 10.7692
89 4AF0 IMP 11.2821
90 2A2C NG1 11.2821
91 2A2C ADP 11.2821
92 2YNC YNC 11.2821
93 4ZY1 4U5 11.7949
94 3ZL8 ADP 12.8205
95 4Z87 GDP 13.3333
96 3SXN COA 14.359
97 1W78 PD8 14.8718
98 1W78 ADP 14.8718
99 5K2M ADP 15.0943
100 1OFU GDP 15.126
101 3V2U ATP 15.8974
102 1H74 ADP 21.0256
103 5TVJ COA 23.0769
104 5TVJ 7LF 23.0769
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