Receptor
PDB id Resolution Class Description Source Keywords
3NGZ 2.1 Å EC: 3.1.13.- CRYSTAL STRUCTURE OF RNASE T IN COMPLEX WITH A NON-PREFERRED (GC) WITH ONE MG IN THE ACTIVE SITE ESCHERICHIA COLI EXORIBONUCLEASE RNA PROCESSING RNA MATURATION PROTEIN-DNAINTERACTIONS PROTEIN-DNA COMPLEX EXO-NUCLEASE HYDROLASE-COMPLEX
Ref.: STRUCTURAL BASIS FOR RNA TRIMMING BY RNASE T IN STA 3'-END MATURATION NAT.CHEM.BIOL. V. 7 236 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CO A:217;
B:217;
Invalid;
Invalid;
none;
none;
submit data
58.933 Co [Co+2...
DG DC C:1;
D:1;
Valid;
Valid;
none;
none;
submit data
619.401 n/a [P+](...
MG A:1000;
B:2000;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3NGZ 2.1 Å EC: 3.1.13.- CRYSTAL STRUCTURE OF RNASE T IN COMPLEX WITH A NON-PREFERRED (GC) WITH ONE MG IN THE ACTIVE SITE ESCHERICHIA COLI EXORIBONUCLEASE RNA PROCESSING RNA MATURATION PROTEIN-DNAINTERACTIONS PROTEIN-DNA COMPLEX EXO-NUCLEASE HYDROLASE-COMPLEX
Ref.: STRUCTURAL BASIS FOR RNA TRIMMING BY RNASE T IN STA 3'-END MATURATION NAT.CHEM.BIOL. V. 7 236 2011
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 3VA0 - DG DG n/a n/a
2 3NGZ - DG DC n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 3VA0 - DG DG n/a n/a
2 3NGZ - DG DC n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 3VA0 - DG DG n/a n/a
2 3NGZ - DG DC n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: DG DC; Similar ligands found: 37
No: Ligand ECFP6 Tc MDL keys Tc
1 DG DC 1 1
2 DC DG DA DC 0.75188 0.975309
3 DC DG 0.729508 0.963415
4 DG DA DC DG 0.664336 0.951807
5 DA DC DG DA 0.659722 0.951807
6 DC DG DT DA 0.608974 0.929412
7 DG DG 0.608333 0.915663
8 CGP 0.603053 0.963415
9 DT DA DC DG 0.602564 0.929412
10 3PD UM3 0.571429 0.939024
11 DU DU DU DU BRU DG DU 0.55102 0.908046
12 DG DT DC 0.545455 0.918605
13 DA DU DG DA 0.540741 0.904762
14 G G G C 0.539007 0.915663
15 G C C C 0.520548 0.926829
16 G C 0.496454 0.903614
17 G G G RPC 0.485915 0.902439
18 A G C C 0.472973 0.914634
19 DGI 0.467742 0.925926
20 DT MA7 DT 0.467532 0.872093
21 DCP MG 0.467213 0.819277
22 G G U 0.467153 0.890244
23 DG 0.466667 0.9375
24 DGP 0.466667 0.9375
25 DT DT DT DT DT 0.458015 0.788235
26 DCM 0.448276 0.8625
27 DC 0.448276 0.8625
28 DGT 0.44186 0.925926
29 YYY 0.441667 0.851852
30 DC DC DT DG 0.430657 0.785714
31 OMC OMU OMG OMG U 0.429448 0.872093
32 GPC 0.426667 0.862069
33 CG2 0.418919 0.892857
34 G G 0.416058 0.86747
35 DCP 0.416 0.851852
36 DA DT DA DA 0.414013 0.848837
37 DT DC 0.409722 0.77907
Similar Binding Sites (Proteins are less than 50% similar to leader)
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