Receptor
PDB id Resolution Class Description Source Keywords
3NGZ 2.1 Å EC: 3.1.13.- CRYSTAL STRUCTURE OF RNASE T IN COMPLEX WITH A NON-PREFERRED (GC) WITH ONE MG IN THE ACTIVE SITE ESCHERICHIA COLI EXORIBONUCLEASE RNA PROCESSING RNA MATURATION PROTEIN-DNAINTERACTIONS PROTEIN-DNA COMPLEX EXO-NUCLEASE HYDROLASE-COMPLEX
Ref.: STRUCTURAL BASIS FOR RNA TRIMMING BY RNASE T IN STA 3'-END MATURATION NAT.CHEM.BIOL. V. 7 236 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CO A:217;
B:217;
Invalid;
Invalid;
none;
none;
submit data
58.933 Co [Co+2...
DG DC C:1;
D:1;
Valid;
Valid;
none;
none;
submit data
619.401 n/a P(=O)...
MG A:1000;
B:2000;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3NGZ 2.1 Å EC: 3.1.13.- CRYSTAL STRUCTURE OF RNASE T IN COMPLEX WITH A NON-PREFERRED (GC) WITH ONE MG IN THE ACTIVE SITE ESCHERICHIA COLI EXORIBONUCLEASE RNA PROCESSING RNA MATURATION PROTEIN-DNAINTERACTIONS PROTEIN-DNA COMPLEX EXO-NUCLEASE HYDROLASE-COMPLEX
Ref.: STRUCTURAL BASIS FOR RNA TRIMMING BY RNASE T IN STA 3'-END MATURATION NAT.CHEM.BIOL. V. 7 236 2011
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 3VA0 - DG DG n/a n/a
2 3NGZ - DG DC n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 3VA0 - DG DG n/a n/a
2 3NGZ - DG DC n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 3VA0 - DG DG n/a n/a
2 3NGZ - DG DC n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: DG DC; Similar ligands found: 35
No: Ligand ECFP6 Tc MDL keys Tc
1 DG DC 1 1
2 DC DG DA DC 0.75188 0.975309
3 DA DC DG DA 0.748201 0.987654
4 DC DG 0.729508 0.963415
5 DG DA DC DG 0.664336 0.951807
6 DC DG DT DA 0.608974 0.929412
7 DG DG 0.608333 0.915663
8 CGP 0.603053 0.963415
9 DT DA DC DG 0.602564 0.929412
10 3PD UM3 0.571429 0.939024
11 DU DU DU DU BRU DG DU 0.551724 0.885057
12 DA DU DG DA 0.540741 0.904762
13 G G G C 0.539007 0.915663
14 G C C C 0.520548 0.926829
15 G C 0.496454 0.903614
16 G G G RPC 0.485915 0.902439
17 A G C C 0.472973 0.914634
18 DGI 0.467742 0.925926
19 DT MA7 DT 0.467532 0.872093
20 DGP 0.466667 0.9375
21 DG 0.466667 0.9375
22 G G 0.466667 0.879518
23 DT DT DT DT DT 0.458015 0.788235
24 DU DU DU DU BRU DA DU 0.453416 0.829545
25 DCM 0.448276 0.8625
26 DC 0.448276 0.8625
27 DGT 0.44186 0.925926
28 YYY 0.441667 0.851852
29 DC DC DT DG 0.430657 0.785714
30 GPC 0.426667 0.862069
31 G U 0.421769 0.903614
32 CG2 0.418919 0.892857
33 DCP 0.416 0.851852
34 DA DT DA DA 0.414013 0.848837
35 DT DC 0.409722 0.77907
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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