Receptor
PDB id Resolution Class Description Source Keywords
3N9O 2.31 Å EC: 1.14.11.27 CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE, H3K9ME AND NOG CAENORHABDITIS ELEGANS HISTONE METHYLATION DEMETHYLASE PHD JMJC FE(II) AND ALP(ALPHA-KETOGLUTARATE)-DEPENDENT DIOXYGENASE FAMILY OXIDORE
Ref.: STRUCTURAL INSIGHTS INTO A DUAL-SPECIFICITY HISTONE DEMETHYLASE CEKDM7A FROM CAENORHABDITIS ELEGANS CELL RES. V. 20 886 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FE2 A:1;
Part of Protein;
none;
submit data
55.845 Fe [Fe+2...
OGA A:4;
Valid;
none;
submit data
147.086 C4 H5 N O5 C(C(=...
ZN A:2;
A:3;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3N9O 2.31 Å EC: 1.14.11.27 CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE, H3K9ME AND NOG CAENORHABDITIS ELEGANS HISTONE METHYLATION DEMETHYLASE PHD JMJC FE(II) AND ALP(ALPHA-KETOGLUTARATE)-DEPENDENT DIOXYGENASE FAMILY OXIDORE
Ref.: STRUCTURAL INSIGHTS INTO A DUAL-SPECIFICITY HISTONE DEMETHYLASE CEKDM7A FROM CAENORHABDITIS ELEGANS CELL RES. V. 20 886 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 13 families.
1 3N9O - OGA C4 H5 N O5 C(C(=O)O)N....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 11 families.
1 3N9O - OGA C4 H5 N O5 C(C(=O)O)N....
2 3N9Q - OGA C4 H5 N O5 C(C(=O)O)N....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 3N9O - OGA C4 H5 N O5 C(C(=O)O)N....
2 3N9Q - OGA C4 H5 N O5 C(C(=O)O)N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: OGA; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 OGA 1 1
2 AAC 0.461538 0.827586
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3N9O; Ligand: OGA; Similar sites found: 91
This union binding pocket(no: 1) in the query (biounit: 3n9o.bio1) has 12 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5KF6 FAD 0.01437 0.42516 1.51515
2 2FY3 CHT 0.04865 0.40027 1.51515
3 4LS7 1X9 0.01766 0.40524 2.11268
4 3G4G D71 0.009738 0.42161 2.13777
5 2OG7 SIN 0.003079 0.41735 2.2409
6 2Q8E OGA 0.0002809 0.46475 2.27273
7 4XAC AKG 0.00006198 0.49606 2.38095
8 4NPL AKG 0.004773 0.42392 2.4
9 5UQD AKG 0.0001117 0.50233 2.48869
10 5V1B 8UY 0.0004448 0.44575 2.5
11 5JXZ ISJ 0.01338 0.41016 2.55754
12 5JXZ ISC 0.01925 0.4031 2.55754
13 5JY4 ISC 0.01992 0.40033 2.55754
14 4J25 OGA 0.00152 0.4325 2.62009
15 1OIJ AKG 0.002773 0.42178 2.65781
16 4OCT AKG 0.0002434 0.43627 2.7027
17 5FWJ MMK 0.001849 0.41345 2.76008
18 2FCU AKG 0.001402 0.44701 2.8754
19 1LRH NLA 0.0006641 0.42392 3.06748
20 5C5T AKG 0.002151 0.40752 3.07018
21 2GJ5 VD3 0.04668 0.40538 3.08642
22 5EPA AKG 0.0000322 0.53117 3.58423
23 5KR7 6X9 0.00004264 0.45986 3.78788
24 2ZID GLC GLC GLC 0.02063 0.40345 3.78788
25 4YRD 3IT 0.004715 0.41259 3.89972
26 4RFR RHN 0.002545 0.45094 3.94089
27 4BQY FNT 0.00009765 0.40107 3.96825
28 3HQR OGA 0.0006136 0.41232 4.06504
29 4M26 AKG 0.003498 0.41653 4.12088
30 2RDQ AKG 0.003998 0.44369 4.16667
31 5L9B AKG 0.0003076 0.43234 4.36508
32 1KQW RTL 0.01395 0.41497 4.47761
33 1SLT NDG GAL 0.002027 0.40967 4.47761
34 2A1X AKG 0.0005027 0.43745 4.54545
35 4JZR 4JR 0.0009023 0.42174 4.62963
36 5M0T AKG 0.006621 0.40904 4.7619
37 1TUF AZ1 0.02755 0.40185 4.83871
38 4R38 RBF 0.002672 0.45404 5
39 5LUN OGA 0.001485 0.42364 5.39773
40 4ZU5 THM 0.01012 0.41864 5.55556
41 3SAO NKN 0.01303 0.40724 5.625
42 3AVS OGA 0.0004375 0.48026 5.64972
43 3AVR OGA 0.0002454 0.46829 5.64972
44 3WUC GLC GAL 0.02158 0.40735 5.83942
45 3R96 AMP 0.03197 0.41716 5.85106
46 3R96 ACO 0.03197 0.41716 5.85106
47 1OI6 TMP 0.008869 0.40541 5.85366
48 2B9F ADP 0.02434 0.40088 6.23229
49 4NMC 2OP 0.02099 0.42377 6.25
50 4NMC FAD 0.02184 0.42377 6.25
51 2JIG PD2 0.003314 0.40013 6.25
52 1ODM ASV 0.0002703 0.51726 6.34441
53 4QM9 CYS 0.000576 0.46655 6.35838
54 3MPB FRU 0.0005532 0.40515 6.50407
55 2IUW AKG 0.02867 0.41243 6.72269
56 5KWY C3S 0.001166 0.46518 6.88259
57 5HV0 AKG 0.0005199 0.48652 6.91244
58 5A3T MMK 0.003542 0.45948 7.06861
59 3G5D 1N1 0.03288 0.42479 7.34266
60 5ML3 DL3 0.0444 0.40581 7.38255
61 2A1L PCW 0.01331 0.44383 7.40741
62 5I0U DCY 0.0002445 0.48791 7.5
63 5A5W GUO 0.0221 0.42645 7.90514
64 2FXD DR7 0.03908 0.4049 8.08081
65 5DJT FMN 0.0008328 0.48144 8.19672
66 3LXK MI1 0.04206 0.40107 8.8685
67 1ZHX HC3 0.007764 0.43786 9.13242
68 2Z6D FMN 0.001606 0.46593 9.23077
69 3EW2 BTN 0.001279 0.41204 9.62963
70 4WN5 MVC 0.01522 0.41882 10.4348
71 3W21 AKG 0.0002867 0.48453 10.6227
72 1QKQ MAN 0.01631 0.42068 11.2676
73 5FLJ QUE 0.009903 0.42488 11.2903
74 3T03 3T0 0.0124 0.41448 11.6197
75 4IGQ OGA 0.001007 0.41931 13.6111
76 4IGQ THR M3L GLN 0.009513 0.41687 13.6111
77 3MTX PGT 0.04531 0.40532 14.5695
78 4UF0 MMK 0.001601 0.45983 14.7727
79 5LY2 OGA 0.0001708 0.48647 16.5354
80 5FWE OGA 0.0002807 0.47414 16.5354
81 1MDC PLM 0.01581 0.41675 17.4242
82 3RDO BTN 0.01286 0.40675 18.3007
83 2YG2 S1P 0.03355 0.40136 23.8372
84 5L9V OGA 0.000199 0.43823 26.3158
85 5JSP DQY 0.003993 0.42514 29.8507
86 4XCB HY0 0.002768 0.46168 41.1765
87 4XCB AKG 0.001076 0.45711 41.1765
88 2P5B OGA 0.0003246 0.48733 45.4545
89 4OMJ 2TX 0.01367 0.4277 47.0588
90 3KV5 OGA 0.0000000000177 0.84922 47.9508
91 3PUA OGA 0.00000009688 0.62777 47.9592
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